Clone Sequence Records
BS10005.3prime Sequence
969 bp (818 high quality bases) assembled on 2006-04-19
> BS10005.3prime
ATGGTCTAGAAAGCTTTTAACTTCCGTTGCTAACGCTAGGATTAGCACAA
CTATCGCCAATTATTCCCGGCACGTCCGGGTCGGCATCAACATTTATGGG
ATTCAATTTGGCCGCTGCGGTCATAGCCTCGCGACGCTGACGTTTCATCT
CTAGAAGCAGTTTTCTCTGGGCCTCCCTCTTTAAAGCTGCTGCCGAGTTA
GGTGGGGGAGGTGCCGAGCCATTCACACGAACGCTGGATGCCTTTCCGAC
TGTTTTCACTTGCGAAACACCGACTTTTGACGGCTTTATTGTCTTAGTTG
GTATGGTGTGCAAATCGGGTTGGTCAGCGACGGACTGTGCTTTTACCTTC
CAGTCGTTACTTTTGAGTTTCTCTATATCAGCAAAAATAGAATCCACGTG
CTCCACCTGCAAATAAACCATATCCCAGAATCCTTGTAAATCATCCAGAG
TTGTTGGAAACTTATCCTCTGGTGAGCGATTCAGATTATTGTGGCAAAGA
CCCTCGAATTGTTTCATTTTCTGCGATACCAAGAGACGGGCCTTACCCGA
CGCTGATCGCAGTAGCCCAAAGGTATCTTCGGAGATATCTGGATTTGTAG
ACAAGGCGTCTGCATATTTTTCAGCAAGAGCGGCTAGCACCAAGAGACGG
CTTTGTTCCTCTTTTAGTATTTTCAGAAAGAAATTTCCATCCTTAACAAC
AGCTTCAACAGAAATATTGGAAGTGCTGATGTATTCCTCTGAGGCTAGTT
TGTCCATTTTTGTGGATTCGTGGTCTACTTCATCTGTGGGACCATGGTCT
GGACTTGACTCGTTATCTACAAGCAGTACATCAGGAGCCATGCAAGATCG
AGGAGCACCCCTTTTTGGTGACACAGTAAGCAACTGGGCGCGGAACTCTT
GACTAAGGTGCTAAACACGGGCAGGTCAAGATCTCCGTTAAGCCCTGGAG
AATGCAACGGCTCGTCTAT
BS10005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8390-PA | 1818 | vlc-RA | 924..1818 | 911..17 | 4450 | 99.8 | Minus |
| CG8390-PB | 1752 | vlc-RB | 858..1752 | 911..17 | 4450 | 99.8 | Minus |
| CG8390-PC | 1818 | vlc-RC | 924..1818 | 911..17 | 4450 | 99.8 | Minus |
| CG8390-PD | 1905 | vlc-RD | 1011..1905 | 911..17 | 4450 | 99.8 | Minus |
| CG8390-PA | 1818 | vlc-RA | 865..923 | 969..911 | 295 | 100 | Minus |
| CG8390-PB | 1752 | vlc-RB | 799..857 | 969..911 | 295 | 100 | Minus |
| CG8390-PC | 1818 | vlc-RC | 865..923 | 969..911 | 295 | 100 | Minus |
| CG8390-PD | 1905 | vlc-RD | 952..1010 | 969..911 | 295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vlc-RI | 2425 | CG8390-RI | 952..1906 | 969..16 | 4735 | 99.8 | Minus |
| vlc-RH | 2369 | CG8390-RH | 896..1850 | 969..16 | 4735 | 99.8 | Minus |
| vlc-RG | 2487 | CG8390-RG | 1014..1968 | 969..16 | 4735 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5704434..5704920 | 502..16 | 2435 | 100 | Minus |
| 2R | 25286936 | 2R | 5703845..5704216 | 969..599 | 1795 | 99.5 | Minus |
| 2R | 25286936 | 2R | 5704286..5704384 | 598..500 | 495 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1854..1960 | 626..732 | 120 | 60.6 | Plus |
BS10005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:20 Download gff for
BS10005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-PC | 865..1818 | 17..969 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:19 Download gff for
BS10005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8390-PC | 865..1818 | 17..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:52:17 Download gff for
BS10005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RG | 1014..1968 | 16..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:20 Download gff for
BS10005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RG | 1014..1968 | 16..969 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:20 Download gff for
BS10005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5703845..5704216 | 599..969 | 99 | -> | Minus |
| 2R | 5704286..5704382 | 502..598 | 100 | -> | Minus |
| 2R | 5704435..5704920 | 16..501 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:52:17 Download gff for
BS10005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1591350..1591721 | 599..969 | 99 | -> | Minus |
| arm_2R | 1591791..1591887 | 502..598 | 100 | -> | Minus |
| arm_2R | 1591940..1592425 | 16..501 | 100 | | Minus |
BS10005.5prime Sequence
947 bp (790 high quality bases) assembled on 2006-04-19
> BS10005.5prime
GAAGTTATCAGTCGACATGGATCGCAGTCTGGACTCTATTGGCAGCTGTT
CACTGGATGTAGACGCCGACTCCTCCGATATATCAGATACCAGTGGGAGC
CTGAACTTTCCAACGCCGGTCTCAGTAAGGGACATAACACGCGAATTTAC
TGCCAACCTTCGGGAGCGCTGTGTGCCTAACTTGCCTCCCCAGCCTCAGC
ACAAAACCCCTGCCTACGTTGAATCCAGGTCGTCAGAGCTGGAGCACATG
GTGCTGTCACCTGCAATTGTGGAGTGCGACCAAGAGCCGAGCTCCAATGA
TTTTGACGAGACTTCTGCAGAAAATTCACAAGAAGCTCCCGAAAAGAAGC
CCAGCTATTTAAACCTGGCTTGCTGCGTCAACGGTTATTCCAACCTTACC
ACCTACGACTCCAAGATTCGGCAGGACATAAACAAGTCACGTGAGGTTTC
CCCGATTCGTCCCTCCACCAGCAGTCTACAGTACTGCAAACGCAACCACT
TTCTAGCGACACCAACTCTGCACAGCATGCCTTCTCCGGCCACCAAGTGC
AAACCCATCGAGCCTAACAACAACAGCAACGACAGTAGCGGGAATTTTAG
TTCGGGTTCTGGTCACAGCAATGGAAATGGCAGTTTTATCAAGCAACGGG
TGGAGCGACTTTACGGGCCGGGTGCATTAGCCCAGGGTTTCTACAGCCCC
AAAAAGCACGGCCAGTCACCATCGAATGCTGCAGGGCGATCGGAAAGGGG
GCAGGTGGAGATCGACTCTCTACAAGGCTCCGAACTGGCTCGGAAATTCA
AGCAGCTCTCCCCCAGTAAAGACTATGGGGAGTTTCGAAAAAAAATGCAG
AAGAAGTGTTCTCAGAGTACAACGGCGAGGATAGACGAGCCGTTGCATTC
TCCAGGGCTTTACGGAGATCTTGACCTGCCCGTGTTTAGGCACCTTA
BS10005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8390-PD | 1905 | vlc-RD | 87..1018 | 16..947 | 4635 | 99.8 | Plus |
| CG8390-PA | 1818 | vlc-RA | 1..931 | 17..947 | 4630 | 99.8 | Plus |
| CG8390-PC | 1818 | vlc-RC | 1..931 | 17..947 | 4630 | 99.8 | Plus |
| CG8390-PB | 1752 | vlc-RB | 425..865 | 507..947 | 2180 | 99.7 | Plus |
| CG8390-PB | 1752 | vlc-RB | 1..424 | 17..440 | 2120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vlc-RI | 2425 | CG8390-RI | 87..1018 | 16..947 | 4645 | 99.9 | Plus |
| vlc-RH | 2369 | CG8390-RH | 31..962 | 16..947 | 4645 | 99.9 | Plus |
| vlc-RG | 2487 | CG8390-RG | 149..1080 | 16..947 | 4645 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5703048..5703911 | 84..947 | 4305 | 99.9 | Plus |
| 2R | 25286936 | 2R | 5702877..5702947 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 12:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5601..5673 | 517..589 | 122 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2420 | 473..594 | 118 | 62.9 | Plus |
BS10005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:21 Download gff for
BS10005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8390-PD | 79..1017 | 8..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:21 Download gff for
BS10005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8390-PD | 79..1017 | 8..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:03:45 Download gff for
BS10005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RG | 141..1079 | 8..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:44:10 Download gff for
BS10005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RG | 141..1079 | 8..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:44:10 Download gff for
BS10005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5702869..5702947 | 8..86 | 96 | -> | Plus |
| 2R | 5703051..5703910 | 87..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:03:45 Download gff for
BS10005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1590556..1591415 | 87..946 | 99 | | Plus |
| arm_2R | 1590374..1590452 | 8..86 | 96 | -> | Plus |
BS10005.complete Sequence
1850 bp assembled on 2007-11-30
GenBank Submission: FJ636522
> BS10005.complete
GAAGTTATCAGTCGACATGGATCGCAGTCTGGACTCTATTGGCAGCTGTT
CACTGGATGTAGACGCCGACTCCTCCGATATATCAGATACCAGTGGGAGC
CTGAACTTTCCAACGCCGGTCTCAGTAAGGGACATAACACGCGAATTTAC
TGCCAACCTTCGGGAGCGCTGTGTGCCTAACTTGCCTCCCCAGCCTCAGC
ACAAAACCCCTGCCTACGTTGAATCCAGGTCGTCAGAGCTGGAGCACATG
GTGCTGTCACCTGCAATTGTGGAGTGCGACCAAGAGCCGAGCTCCAATGA
TTTTGACGAGACTTCTGCAGAAAATTCACAAGAAGCTCCCGAAAAGAAGC
CCAGCTATTTAAACCTGGCTTGCTGCGTCAACGGTTATTCCAACCTTACC
ACCTACGACTCCAAGATTCGGCAGGACATAAACAAGTCACGTGAGGTTTC
CCCGATTCGTCCCTCCACCAGCAGTCTACAGTACTGCAAACGCAACCACT
TTCTAGCGACACCAACTCTGCACAGCATGCCTTCTCCGGCCACCAAGTGC
AAACCCATCGAGCCTAACAACAACAGCAACGACAGTAGCGGGAATTTTAG
TTCGGGTTCTGGTCACAGCAATGGAAATGGCAGTTTTATCAAGCAACGGG
TGGAGCGACTTTACGGGCCGGGTGCATTAGCCCAGGGTTTCTACAGCCCC
AAAAAGCACGGCCAGTCACCATCGAATGCTGCAGGGCGATCGGAAAGGGG
GCAGGTGGAGATCGACTCTCTACAAGGCTCCGAACTGGCTCGGAAATTCA
AGCAGCTCTCCCCCAGTAAAGACTATGGGGAGTTTCGAAAAAAAATGCAG
AAGAAGTGTTCTCAGAGTACAACGGCGAGGATAGACGAGCCGTTGCATTC
TCCAGGGCTTAACGGAGATCTTGACCTGCCCGTGTTTAGGCACCTTAGTC
AAGAGTTCCGCGCCCAGTTGCCTACTGTGTCACCAAAAAGGGGTGCTCCT
CGATCTTGCATGGCTCCTGATGTACTGCTTGTAGATAACGAGTCAAGTCC
AGACCATGGTCCCACAGATGAAGTAGACCACGAATCCACAAAAATGGACA
AACTAGCCTCAGAGGAATACATCAGCACTTCCAATATTTCTGTTGAAGCT
GTTGTTAAGGATGGAAATTTCTTTCTGAAAATACTAAAAGAGGAACAAAG
CCGTCTCTTGGTGCTAGCCGCTCTTGCTGAAAAATATGCAGACGCCTTGT
CTACAAATCCAGATATCTCCGAAGATACCTTTGGGCTACTGCGATCAGCG
TCGGGTAAGGCCCGTCTCTTGGTATCGCAGAAAATGAAACAATTCGAGGG
TCTTTGCCACAATAATCTGAATCGCTCACCAGAGGATAAGTTTCCAACAA
CTCTGGATGATTTACAAGGATTCTGGGATATGGTTTATTTGCAGGTGGAG
CACGTGGATTCTATTTTTGCTGATATAGAGAAACTCAAAAGTAACGACTG
GAAGGTAAAAGCACAGTCCGTCGCTGACCAACCCGATTTGCACACCATAC
CAACTAAGACAATAAAGCCGTCAAAAGTCGGTGTTTCGCAAGTGAAAACA
GTCGGAAAGGCATCCAGCGTTCGTGTGAATGGCTCGGCACCTCCCCCACC
TAACTCGGCAGCAGCTTTAAAGAGGGAGGCCCAGAGAAAACTGCTTCTAG
AGATGAAACGTCAGCGTCGCGAGGCTATGACCGCAGCGGCCAAATTGAAT
CCCATAAATGTTGATGCCGACCCGGACGTGCCGGGAATAATTGGCGATAG
TTGTGCTAATCCTAGCGTTAGCAACGGAAGTTAAAAGCTTTCTAGACCAT
BS10005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vlc-RI | 1818 | CG8390-PI | 1..1818 | 17..1834 | 9090 | 100 | Plus |
| vlc-RH | 1818 | CG8390-PH | 1..1818 | 17..1834 | 9090 | 100 | Plus |
| vlc-RG | 1818 | CG8390-PG | 1..1818 | 17..1834 | 9090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vlc-RI | 2425 | CG8390-RI | 87..1906 | 16..1835 | 9100 | 100 | Plus |
| vlc-RH | 2369 | CG8390-RH | 31..1850 | 16..1835 | 9100 | 100 | Plus |
| vlc-RG | 2487 | CG8390-RG | 149..1968 | 16..1835 | 9100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5703048..5704216 | 84..1252 | 5845 | 100 | Plus |
| 2R | 25286936 | 2R | 5704434..5704920 | 1349..1835 | 2435 | 100 | Plus |
| 2R | 25286936 | 2R | 5704286..5704384 | 1253..1351 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 5702877..5702947 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5601..5673 | 517..589 | 122 | 63 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1854..1960 | 1225..1119 | 120 | 60.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2420 | 473..594 | 118 | 62.9 | Plus |
BS10005.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:42 Download gff for
BS10005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RD | 79..1905 | 8..1834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:51 Download gff for
BS10005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RD | 84..1911 | 8..1835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:17 Download gff for
BS10005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RG | 150..1965 | 17..1832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:27 Download gff for
BS10005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RD | 93..1908 | 17..1832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:59 Download gff for
BS10005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vlc-RG | 150..1965 | 17..1832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:59 Download gff for
BS10005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5704286..5704382 | 1253..1349 | 100 | -> | Plus |
| 2R | 5702878..5702947 | 17..86 | 100 | -> | Plus |
| 2R | 5703051..5704216 | 87..1252 | 100 | -> | Plus |
| 2R | 5704435..5704917 | 1350..1832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:17 Download gff for
BS10005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1590383..1590452 | 17..86 | 100 | -> | Plus |
| arm_2R | 1590556..1591721 | 87..1252 | 100 | -> | Plus |
| arm_2R | 1591791..1591887 | 1253..1349 | 100 | -> | Plus |
| arm_2R | 1591940..1592422 | 1350..1832 | 100 | | Plus |
BS10005.pep Sequence
Translation from 16 to 1833
> BS10005.pep
MDRSLDSIGSCSLDVDADSSDISDTSGSLNFPTPVSVRDITREFTANLRE
RCVPNLPPQPQHKTPAYVESRSSELEHMVLSPAIVECDQEPSSNDFDETS
AENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSREVSPIRPS
TSSLQYCKRNHFLATPTLHSMPSPATKCKPIEPNNNSNDSSGNFSSGSGH
SNGNGSFIKQRVERLYGPGALAQGFYSPKKHGQSPSNAAGRSERGQVEID
SLQGSELARKFKQLSPSKDYGEFRKKMQKKCSQSTTARIDEPLHSPGLNG
DLDLPVFRHLSQEFRAQLPTVSPKRGAPRSCMAPDVLLVDNESSPDHGPT
DEVDHESTKMDKLASEEYISTSNISVEAVVKDGNFFLKILKEEQSRLLVL
AALAEKYADALSTNPDISEDTFGLLRSASGKARLLVSQKMKQFEGLCHNN
LNRSPEDKFPTTLDDLQGFWDMVYLQVEHVDSIFADIEKLKSNDWKVKAQ
SVADQPDLHTIPTKTIKPSKVGVSQVKTVGKASSVRVNGSAPPPPNSAAA
LKREAQRKLLLEMKRQRREAMTAAAKLNPINVDADPDVPGIIGDSCANPS
VSNGS*
BS10005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vlc-PI | 605 | CG8390-PI | 1..605 | 1..605 | 3130 | 100 | Plus |
| vlc-PH | 605 | CG8390-PH | 1..605 | 1..605 | 3130 | 100 | Plus |
| vlc-PG | 605 | CG8390-PG | 1..605 | 1..605 | 3130 | 100 | Plus |
| vlc-PF | 605 | CG8390-PF | 1..605 | 1..605 | 3130 | 100 | Plus |
| vlc-PE | 605 | CG8390-PE | 1..605 | 1..605 | 3130 | 100 | Plus |
