Clone Sequence Records
BS10006.3prime Sequence
940 bp (823 high quality bases) assembled on 2006-04-19
> BS10006.3prime
ATGGTCTAGAAAGCTTTCACTGTACAGTGAGCTCAATTTGCGTGGAACTG
CTCCGGCTGACCGATGAGATTTTGCGCGCCAACTTTTGCAGTGTGCCAAC
AGCGTAGCCCTCGCCCTGCAAGAAGAGCCGGAAGGCCTCGGCCAGCTTAG
CCGGCTGCTCCTCCAGCACCAAAGCGCAATCGGAAATCTTCATCCACGAT
GAGTTTGTAGGATCTAGACGGCCATTGAAGGTCACCGTGTCGTCGACGTG
CGGCGAGAGCGAACCTGTGATATTGATCACCGGCATCTTCAGCGTGGTGG
CCGCCGTTTCGCTGCCCGGAGTACCTGGCGGAGTGCGTGCCAGATGCAGG
TCGTTACGATGGATGTACGCGTTGATCAGCATGGCAAGATTGGTCGGATT
AACGCCACGCTCGAAGTGCTGCTTGTACATCTGCACCAGGTCGTGATTGC
GCTCCTCCGGATTGCGTCCGAAGTGGTGCCACATCAGATAATCGATCACG
CCCTGTGTCATGCCCTTGGTGCGCAAGAAGCGGGCATTGAAGCTCTGGTA
GCCCCACTCGATCCAGCCCGACTGCGTGGACACGCAATTGATCAGGCACA
GGGCGCCCACCTTGTCCGGATGGGCGTGAGCGAAACGGGCCAGAATATTC
GCCCCGGCACCAACGCCGAAACCAATCACCGACTTTAGGCCAAAGTGGGA
TAGCACGAANAGCAGCTGGGCGGCCAGATCATCCATGGTCGGATAGACGT
AATCCTCTGGCAAAGTGGGTGCACCCTCCTCCTGGCCAGGAGCAGTCACG
TGGTAAACACAGAAGTTCTCCAGCAGACCTCGCATCACTGGAAAATTGAA
GAAGCCAGCAAAGCTGGTGGCGTAGTTGAGGCCCAAATCGTGGTAGGTGA
TAATGGCCGGCTTGGCCGTATCGCCCTGTATGGCCACGTG
BS10006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15669-PA | 1344 | MESK2-RA | 421..1344 | 940..17 | 4601 | 99.8 | Minus |
CG15669-PF | 1344 | MESK2-RF | 421..1344 | 940..17 | 4601 | 99.8 | Minus |
CG15669-PD | 1098 | MESK2-RD | 175..1098 | 940..17 | 4601 | 99.8 | Minus |
CG15669-PE | 1344 | MESK2-RE | 421..1344 | 940..17 | 4601 | 99.8 | Minus |
CG15669-PJ | 1407 | MESK2-RJ | 124..962 | 940..102 | 4176 | 99.8 | Minus |
CG15669-PI | 1458 | MESK2-RI | 175..1013 | 940..102 | 4176 | 99.8 | Minus |
CG15669-PB | 1278 | MESK2-RB | 421..1258 | 940..103 | 4171 | 99.8 | Minus |
CG15669-PK | 1230 | MESK2-RK | 337..1174 | 940..103 | 4171 | 99.8 | Minus |
CG15669-PC | 1314 | MESK2-RC | 421..1258 | 940..103 | 4171 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:01:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RE | 2619 | CG15669-RE | 996..1920 | 940..16 | 4614 | 99.9 | Minus |
MESK2-RD | 2218 | CG15669-RD | 595..1519 | 940..16 | 4614 | 99.9 | Minus |
MESK2-RF | 2425 | CG15669-RF | 802..1726 | 940..16 | 4614 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21511404..21511968 | 752..188 | 2814 | 99.8 | Minus |
2R | 25286936 | 2R | 21511123..21511243 | 873..753 | 605 | 100 | Minus |
2R | 25286936 | 2R | 21514208..21514295 | 103..16 | 440 | 100 | Minus |
2R | 25286936 | 2R | 21512091..21512177 | 189..103 | 435 | 100 | Minus |
2R | 25286936 | 2R | 21510994..21511060 | 940..874 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 17:01:45 has no hits.
BS10006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:22 Download gff for
BS10006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-PA | 421..1344 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:22 Download gff for
BS10006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15669-PA | 421..1344 | 17..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:29:14 Download gff for
BS10006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RF | 802..1726 | 16..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:24:42 Download gff for
BS10006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RF | 802..1726 | 16..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:24:42 Download gff for
BS10006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21510994..21511060 | 874..940 | 100 | -> | Minus |
2R | 21511123..21511243 | 753..873 | 100 | -> | Minus |
2R | 21511404..21511968 | 188..752 | 99 | -> | Minus |
2R | 21512093..21512177 | 103..187 | 100 | -> | Minus |
2R | 21514209..21514295 | 16..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:29:14 Download gff for
BS10006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17398499..17398565 | 874..940 | 100 | -> | Minus |
arm_2R | 17398628..17398748 | 753..873 | 100 | -> | Minus |
arm_2R | 17398909..17399473 | 188..752 | 99 | -> | Minus |
arm_2R | 17399598..17399682 | 103..187 | 100 | -> | Minus |
arm_2R | 17401714..17401800 | 16..102 | 100 | | Minus |
BS10006.5prime Sequence
870 bp (827 high quality bases) assembled on 2006-04-19
> BS10006.5prime
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCA
CGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTC
TTGCGCACCAAGGGCATGAC
BS10006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15669-PB | 1278 | MESK2-RB | 1..854 | 17..870 | 4270 | 100 | Plus |
CG15669-PA | 1344 | MESK2-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
CG15669-PF | 1344 | MESK2-RF | 1..854 | 17..870 | 4270 | 100 | Plus |
CG15669-PE | 1344 | MESK2-RE | 1..854 | 17..870 | 4270 | 100 | Plus |
CG15669-PC | 1314 | MESK2-RC | 1..854 | 17..870 | 4270 | 100 | Plus |
CG15669-PD | 1098 | MESK2-RD | 1..608 | 263..870 | 3040 | 100 | Plus |
CG15669-PI | 1458 | MESK2-RI | 1..608 | 263..870 | 3040 | 100 | Plus |
CG15669-PK | 1230 | MESK2-RK | 209..770 | 309..870 | 2810 | 100 | Plus |
CG15669-PJ | 1407 | MESK2-RJ | 1..557 | 314..870 | 2785 | 100 | Plus |
CG15669-PK | 1230 | MESK2-RK | 1..209 | 17..225 | 1045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RC | 2193 | CG15669-RC | 602..1456 | 16..870 | 4275 | 100 | Plus |
MESK2-RE | 2619 | CG15669-RE | 575..1429 | 16..870 | 4275 | 100 | Plus |
MESK2-RF | 2425 | CG15669-RF | 381..1235 | 16..870 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21511404..21511649 | 625..870 | 1230 | 100 | Plus |
2R | 25286936 | 2R | 21507513..21507722 | 16..225 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 21510866..21511060 | 309..503 | 975 | 100 | Plus |
2R | 25286936 | 2R | 21511123..21511243 | 504..624 | 605 | 100 | Plus |
2R | 25286936 | 2R | 21510115..21510201 | 223..309 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:36:13 has no hits.
BS10006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:23 Download gff for
BS10006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-PC | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:23 Download gff for
BS10006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15669-PE | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:36 Download gff for
BS10006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RF | 381..1235 | 16..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:05 Download gff for
BS10006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RF | 381..1235 | 16..870 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:05 Download gff for
BS10006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21511404..21511649 | 625..870 | 100 | | Plus |
2R | 21511123..21511243 | 504..624 | 100 | -> | Plus |
2R | 21507513..21507722 | 16..225 | 100 | -> | Plus |
2R | 21510118..21510201 | 226..309 | 100 | -> | Plus |
2R | 21510867..21511060 | 310..503 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:36 Download gff for
BS10006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17398628..17398748 | 504..624 | 100 | -> | Plus |
arm_2R | 17398909..17399154 | 625..870 | 100 | | Plus |
arm_2R | 17395018..17395227 | 16..225 | 100 | -> | Plus |
arm_2R | 17397623..17397706 | 226..309 | 100 | -> | Plus |
arm_2R | 17398372..17398565 | 310..503 | 100 | -> | Plus |
BS10006.complete Sequence
1376 bp (1376 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636523
> BS10006.complete
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCA
CGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTC
TTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGTGGCA
CCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAGATGT
ACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCATGCTG
ATCAACGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTCCGCC
AGGTACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCGGTGA
TCAATATCACAGGTTCGCTCTCGCCGCACGTCGACGACACGGTGACCTTC
AATGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCGATTG
CGCTTTGGTGCTGGAGGAGCAGCCGGCTAAGCTGGCCGAGGCCTTCCGGC
TCTTCTTGCAGGGCGAGGGCTACGCTGTTGGCACACTGCAAAAGTTGGCG
CGCAAAATCTCATCGGTCAGCCGGAGCAGTTCCACGCAAATTGAGCTCAC
TGTACAGTGAAAGCTTTCTAGACCAT
BS10006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RE | 1344 | CG15669-PE | 1..1344 | 17..1360 | 6720 | 100 | Plus |
MESK2-RF | 1344 | CG15669-PF | 1..1344 | 17..1360 | 6720 | 100 | Plus |
MESK2-RA | 1344 | CG15669-PA | 1..1344 | 17..1360 | 6720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RE | 2619 | CG15669-RE | 575..1920 | 16..1361 | 6730 | 100 | Plus |
MESK2-RF | 2425 | CG15669-RF | 381..1726 | 16..1361 | 6730 | 100 | Plus |
MESK2-RA | 2646 | CG15669-RA | 602..1947 | 16..1361 | 6730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21511404..21511968 | 625..1189 | 2825 | 100 | Plus |
2R | 25286936 | 2R | 21507513..21507722 | 16..225 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 21510866..21511060 | 309..503 | 975 | 100 | Plus |
2R | 25286936 | 2R | 21511123..21511243 | 504..624 | 605 | 100 | Plus |
2R | 25286936 | 2R | 21514208..21514295 | 1274..1361 | 440 | 100 | Plus |
2R | 25286936 | 2R | 21510115..21510201 | 223..309 | 435 | 100 | Plus |
2R | 25286936 | 2R | 21512091..21512177 | 1188..1274 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:11:44 has no hits.
BS10006.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:46 Download gff for
BS10006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RE | 1..1344 | 17..1360 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:34 Download gff for
BS10006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RE | 586..1931 | 16..1361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:36 Download gff for
BS10006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RA | 603..1945 | 17..1359 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:47 Download gff for
BS10006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RE | 586..1931 | 16..1361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:59 Download gff for
BS10006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RA | 603..1945 | 17..1359 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:59 Download gff for
BS10006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21514209..21514293 | 1275..1359 | 100 | | Plus |
2R | 21507514..21507722 | 17..225 | 100 | -> | Plus |
2R | 21510118..21510201 | 226..309 | 100 | -> | Plus |
2R | 21510867..21511060 | 310..503 | 100 | -> | Plus |
2R | 21511123..21511243 | 504..624 | 100 | -> | Plus |
2R | 21511404..21511968 | 625..1189 | 100 | -> | Plus |
2R | 21512093..21512177 | 1190..1274 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:36 Download gff for
BS10006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17398372..17398565 | 310..503 | 100 | -> | Plus |
arm_2R | 17398628..17398748 | 504..624 | 100 | -> | Plus |
arm_2R | 17395019..17395227 | 17..225 | 100 | -> | Plus |
arm_2R | 17397623..17397706 | 226..309 | 100 | -> | Plus |
arm_2R | 17398909..17399473 | 625..1189 | 100 | -> | Plus |
arm_2R | 17399598..17399682 | 1190..1274 | 100 | -> | Plus |
arm_2R | 17401714..17401798 | 1275..1359 | 100 | | Plus |
BS10006.pep Sequence
Translation from 16 to 1359
> BS10006.pep
MPQSEGGYVSLPAVNGNGGAIYQSTTEPTAPPSVFASVKRAIGQAIKSSP
TDSEELLRSDRLPVIVGGSRDRDKSGKTLTTKMPSAPTHTAEEAHLLGTM
PVDPMDDIELRSVQLQFPNARGSILEACEQRRVPTDKGDVHVAIQGDTAK
PAIITYHDLGLNYATSFAGFFNFPVMRGLLENFCVYHVTAPGQEEGAPTL
PEDYVYPTMDDLAAQLLFVLSHFGLKSVIGFGVGAGANILARFAHAHPDK
VGALCLINCVSTQSGWIEWGYQSFNARFLRTKGMTQGVIDYLMWHHFGRN
PEERNHDLVQMYKQHFERGVNPTNLAMLINAYIHRNDLHLARTPPGTPGS
ETAATTLKMPVINITGSLSPHVDDTVTFNGRLDPTNSSWMKISDCALVLE
EQPAKLAEAFRLFLQGEGYAVGTLQKLARKISSVSRSSSTQIELTVQ*
BS10006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-PE | 447 | CG15669-PE | 1..447 | 1..447 | 2339 | 100 | Plus |
MESK2-PF | 447 | CG15669-PF | 1..447 | 1..447 | 2339 | 100 | Plus |
MESK2-PA | 447 | CG15669-PA | 1..447 | 1..447 | 2339 | 100 | Plus |
MESK2-PC | 437 | CG15669-PC | 1..419 | 1..419 | 2214 | 100 | Plus |
MESK2-PB | 425 | CG15669-PB | 1..419 | 1..419 | 2214 | 100 | Plus |