Clone BS10006 Report

Search the DGRC for BS10006

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptMESK2-RA
Protein status:BS10006.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10006.3prime Sequence

940 bp (823 high quality bases) assembled on 2006-04-19

> BS10006.3prime
ATGGTCTAGAAAGCTTTCACTGTACAGTGAGCTCAATTTGCGTGGAACTG
CTCCGGCTGACCGATGAGATTTTGCGCGCCAACTTTTGCAGTGTGCCAAC
AGCGTAGCCCTCGCCCTGCAAGAAGAGCCGGAAGGCCTCGGCCAGCTTAG
CCGGCTGCTCCTCCAGCACCAAAGCGCAATCGGAAATCTTCATCCACGAT
GAGTTTGTAGGATCTAGACGGCCATTGAAGGTCACCGTGTCGTCGACGTG
CGGCGAGAGCGAACCTGTGATATTGATCACCGGCATCTTCAGCGTGGTGG
CCGCCGTTTCGCTGCCCGGAGTACCTGGCGGAGTGCGTGCCAGATGCAGG
TCGTTACGATGGATGTACGCGTTGATCAGCATGGCAAGATTGGTCGGATT
AACGCCACGCTCGAAGTGCTGCTTGTACATCTGCACCAGGTCGTGATTGC
GCTCCTCCGGATTGCGTCCGAAGTGGTGCCACATCAGATAATCGATCACG
CCCTGTGTCATGCCCTTGGTGCGCAAGAAGCGGGCATTGAAGCTCTGGTA
GCCCCACTCGATCCAGCCCGACTGCGTGGACACGCAATTGATCAGGCACA
GGGCGCCCACCTTGTCCGGATGGGCGTGAGCGAAACGGGCCAGAATATTC
GCCCCGGCACCAACGCCGAAACCAATCACCGACTTTAGGCCAAAGTGGGA
TAGCACGAANAGCAGCTGGGCGGCCAGATCATCCATGGTCGGATAGACGT
AATCCTCTGGCAAAGTGGGTGCACCCTCCTCCTGGCCAGGAGCAGTCACG
TGGTAAACACAGAAGTTCTCCAGCAGACCTCGCATCACTGGAAAATTGAA
GAAGCCAGCAAAGCTGGTGGCGTAGTTGAGGCCCAAATCGTGGTAGGTGA
TAATGGCCGGCTTGGCCGTATCGCCCTGTATGGCCACGTG

BS10006.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PA 1344 MESK2-RA 421..1344 940..17 4601 99.8 Minus
CG15669-PF 1344 MESK2-RF 421..1344 940..17 4601 99.8 Minus
CG15669-PD 1098 MESK2-RD 175..1098 940..17 4601 99.8 Minus
CG15669-PE 1344 MESK2-RE 421..1344 940..17 4601 99.8 Minus
CG15669-PJ 1407 MESK2-RJ 124..962 940..102 4176 99.8 Minus
CG15669-PI 1458 MESK2-RI 175..1013 940..102 4176 99.8 Minus
CG15669-PB 1278 MESK2-RB 421..1258 940..103 4171 99.8 Minus
CG15669-PK 1230 MESK2-RK 337..1174 940..103 4171 99.8 Minus
CG15669-PC 1314 MESK2-RC 421..1258 940..103 4171 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RE 2619 CG15669-RE 996..1920 940..16 4614 99.9 Minus
MESK2-RD 2218 CG15669-RD 595..1519 940..16 4614 99.9 Minus
MESK2-RF 2425 CG15669-RF 802..1726 940..16 4614 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511968 752..188 2814 99.8 Minus
2R 25286936 2R 21511123..21511243 873..753 605 100 Minus
2R 25286936 2R 21514208..21514295 103..16 440 100 Minus
2R 25286936 2R 21512091..21512177 189..103 435 100 Minus
2R 25286936 2R 21510994..21511060 940..874 335 100 Minus
Blast to na_te.dros performed on 2015-02-06 17:01:45 has no hits.

BS10006.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:22 Download gff for BS10006.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-PA 421..1344 17..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:22 Download gff for BS10006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PA 421..1344 17..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:29:14 Download gff for BS10006.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 802..1726 16..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:24:42 Download gff for BS10006.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 802..1726 16..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:24:42 Download gff for BS10006.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21510994..21511060 874..940 100 -> Minus
2R 21511123..21511243 753..873 100 -> Minus
2R 21511404..21511968 188..752 99 -> Minus
2R 21512093..21512177 103..187 100 -> Minus
2R 21514209..21514295 16..102 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:29:14 Download gff for BS10006.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17398499..17398565 874..940 100 -> Minus
arm_2R 17398628..17398748 753..873 100 -> Minus
arm_2R 17398909..17399473 188..752 99 -> Minus
arm_2R 17399598..17399682 103..187 100 -> Minus
arm_2R 17401714..17401800 16..102 100   Minus

BS10006.5prime Sequence

870 bp (827 high quality bases) assembled on 2006-04-19

> BS10006.5prime
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCA
CGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTC
TTGCGCACCAAGGGCATGAC

BS10006.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PB 1278 MESK2-RB 1..854 17..870 4270 100 Plus
CG15669-PA 1344 MESK2-RA 1..854 17..870 4270 100 Plus
CG15669-PF 1344 MESK2-RF 1..854 17..870 4270 100 Plus
CG15669-PE 1344 MESK2-RE 1..854 17..870 4270 100 Plus
CG15669-PC 1314 MESK2-RC 1..854 17..870 4270 100 Plus
CG15669-PD 1098 MESK2-RD 1..608 263..870 3040 100 Plus
CG15669-PI 1458 MESK2-RI 1..608 263..870 3040 100 Plus
CG15669-PK 1230 MESK2-RK 209..770 309..870 2810 100 Plus
CG15669-PJ 1407 MESK2-RJ 1..557 314..870 2785 100 Plus
CG15669-PK 1230 MESK2-RK 1..209 17..225 1045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 2193 CG15669-RC 602..1456 16..870 4275 100 Plus
MESK2-RE 2619 CG15669-RE 575..1429 16..870 4275 100 Plus
MESK2-RF 2425 CG15669-RF 381..1235 16..870 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511649 625..870 1230 100 Plus
2R 25286936 2R 21507513..21507722 16..225 1050 100 Plus
2R 25286936 2R 21510866..21511060 309..503 975 100 Plus
2R 25286936 2R 21511123..21511243 504..624 605 100 Plus
2R 25286936 2R 21510115..21510201 223..309 435 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:36:13 has no hits.

BS10006.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:23 Download gff for BS10006.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-PC 1..854 17..870 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:23 Download gff for BS10006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PE 1..854 17..870 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:36 Download gff for BS10006.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 381..1235 16..870 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:05 Download gff for BS10006.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RF 381..1235 16..870 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:05 Download gff for BS10006.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21511404..21511649 625..870 100   Plus
2R 21511123..21511243 504..624 100 -> Plus
2R 21507513..21507722 16..225 100 -> Plus
2R 21510118..21510201 226..309 100 -> Plus
2R 21510867..21511060 310..503 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:36 Download gff for BS10006.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17398628..17398748 504..624 100 -> Plus
arm_2R 17398909..17399154 625..870 100   Plus
arm_2R 17395018..17395227 16..225 100 -> Plus
arm_2R 17397623..17397706 226..309 100 -> Plus
arm_2R 17398372..17398565 310..503 100 -> Plus

BS10006.complete Sequence

1376 bp (1376 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636523

> BS10006.complete
GAAGTTATCAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGC
CGGCCGTCAATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCC
ACGGCCCCGCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGC
CATCAAGTCCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCC
TGCCGGTCATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACA
CTGACCACCAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACA
TCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCT
CCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGC
GAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACA
GGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCA
ACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGT
CTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGGAGGA
GGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATC
TGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTG
ATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCGCTCA
CGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCA
CGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTC
TTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGTGGCA
CCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAGATGT
ACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCATGCTG
ATCAACGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTCCGCC
AGGTACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCGGTGA
TCAATATCACAGGTTCGCTCTCGCCGCACGTCGACGACACGGTGACCTTC
AATGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCGATTG
CGCTTTGGTGCTGGAGGAGCAGCCGGCTAAGCTGGCCGAGGCCTTCCGGC
TCTTCTTGCAGGGCGAGGGCTACGCTGTTGGCACACTGCAAAAGTTGGCG
CGCAAAATCTCATCGGTCAGCCGGAGCAGTTCCACGCAAATTGAGCTCAC
TGTACAGTGAAAGCTTTCTAGACCAT

BS10006.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RE 1344 CG15669-PE 1..1344 17..1360 6720 100 Plus
MESK2-RF 1344 CG15669-PF 1..1344 17..1360 6720 100 Plus
MESK2-RA 1344 CG15669-PA 1..1344 17..1360 6720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RE 2619 CG15669-RE 575..1920 16..1361 6730 100 Plus
MESK2-RF 2425 CG15669-RF 381..1726 16..1361 6730 100 Plus
MESK2-RA 2646 CG15669-RA 602..1947 16..1361 6730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511968 625..1189 2825 100 Plus
2R 25286936 2R 21507513..21507722 16..225 1050 100 Plus
2R 25286936 2R 21510866..21511060 309..503 975 100 Plus
2R 25286936 2R 21511123..21511243 504..624 605 100 Plus
2R 25286936 2R 21514208..21514295 1274..1361 440 100 Plus
2R 25286936 2R 21510115..21510201 223..309 435 100 Plus
2R 25286936 2R 21512091..21512177 1188..1274 435 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:11:44 has no hits.

BS10006.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:46 Download gff for BS10006.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RE 1..1344 17..1360 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:34 Download gff for BS10006.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RE 586..1931 16..1361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:36 Download gff for BS10006.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RA 603..1945 17..1359 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:47 Download gff for BS10006.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RE 586..1931 16..1361 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:59 Download gff for BS10006.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RA 603..1945 17..1359 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:59 Download gff for BS10006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21514209..21514293 1275..1359 100   Plus
2R 21507514..21507722 17..225 100 -> Plus
2R 21510118..21510201 226..309 100 -> Plus
2R 21510867..21511060 310..503 100 -> Plus
2R 21511123..21511243 504..624 100 -> Plus
2R 21511404..21511968 625..1189 100 -> Plus
2R 21512093..21512177 1190..1274 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:36 Download gff for BS10006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17398372..17398565 310..503 100 -> Plus
arm_2R 17398628..17398748 504..624 100 -> Plus
arm_2R 17395019..17395227 17..225 100 -> Plus
arm_2R 17397623..17397706 226..309 100 -> Plus
arm_2R 17398909..17399473 625..1189 100 -> Plus
arm_2R 17399598..17399682 1190..1274 100 -> Plus
arm_2R 17401714..17401798 1275..1359 100   Plus

BS10006.pep Sequence

Translation from 16 to 1359

> BS10006.pep
MPQSEGGYVSLPAVNGNGGAIYQSTTEPTAPPSVFASVKRAIGQAIKSSP
TDSEELLRSDRLPVIVGGSRDRDKSGKTLTTKMPSAPTHTAEEAHLLGTM
PVDPMDDIELRSVQLQFPNARGSILEACEQRRVPTDKGDVHVAIQGDTAK
PAIITYHDLGLNYATSFAGFFNFPVMRGLLENFCVYHVTAPGQEEGAPTL
PEDYVYPTMDDLAAQLLFVLSHFGLKSVIGFGVGAGANILARFAHAHPDK
VGALCLINCVSTQSGWIEWGYQSFNARFLRTKGMTQGVIDYLMWHHFGRN
PEERNHDLVQMYKQHFERGVNPTNLAMLINAYIHRNDLHLARTPPGTPGS
ETAATTLKMPVINITGSLSPHVDDTVTFNGRLDPTNSSWMKISDCALVLE
EQPAKLAEAFRLFLQGEGYAVGTLQKLARKISSVSRSSSTQIELTVQ*

BS10006.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-PE 447 CG15669-PE 1..447 1..447 2339 100 Plus
MESK2-PF 447 CG15669-PF 1..447 1..447 2339 100 Plus
MESK2-PA 447 CG15669-PA 1..447 1..447 2339 100 Plus
MESK2-PC 437 CG15669-PC 1..419 1..419 2214 100 Plus
MESK2-PB 425 CG15669-PB 1..419 1..419 2214 100 Plus