Clone Sequence Records
BS10007.3prime Sequence
936 bp (871 high quality bases) assembled on 2006-04-19
> BS10007.3prime
ATGGTCTAGAAAGCTTCTAAATGGCATTGGGTGCAAACCATCCATGGAGA
CACTTGGGCACGGGTCCATTGGTATGGAAATCACAACGGCCCAGCTCGGT
CATCGTTTTGGCACATAGCACAATTAGGCCCACATAGCGATCGTTGAGAC
CGCCCAGCACCATGGAGGCCAGGATAACGCCATCGTCCTCGGATTTCGGA
TCCGGCGAAGGCACAAAAATGGGCTCACTGGGATAGACATTCTCCTCGCA
CCAGGTTAGACAGCTCTTATTCCACACATCCACCTTGATGAGGGTGCCCG
GATTCACTGCATCCACATCGGAGCTAATCGCGTAGAAGTATCGGTAGTTC
TTGCCCATATACCGTTCATAATAGATCCTAGGTGTTTCACAGCCCCAATC
ACACAGCATTTCCGGACGCAGTTGGATGCCATTGGTGCCCTGAAACGCCT
CCGCTTGACTGCCCTCCATGGTAACCAGATTGACAAGATTCTCCTCCTCA
TAGCGGCCACGTTTGGCATCTCGCTTGGGGCTTTCCTCTCCAGCAGTGGC
TTGCTTTCCATTGGTGGGCATGTAGGTTATATCCGCATATTGCGAGACCG
AGTGCTTCATGGTGCGAGAAACCTGCGGAGCACTTAGTCCAGCAAGGGAG
AAGGACTTGACCAGTCCCCGCTTGGCGATGCTTGCCGGAGGAATTGTGCC
CAAGGGCAGGACGAATCTCAAGGGACGTCCACGAAAGAGGGTAGCATAAT
TGGGATTCGTTTGCATATTGGCAATGGCCTCCAGATACATGCAGTTGATC
ATCTCGGGATTCCTGTAGCTGCAAATGTCCACCACCACGTGGCCATCCCG
TTCAAAGCAGTTGATGATGTGCAGGTAGAAGAAGGCTTCCGATTCGTAGG
TCTGCACCAGTTTTGCGGGAAACCCGATCTATAAAG
BS10007.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9347-PA | 1863 | ninaB-RA | 967..1863 | 913..17 | 4485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaB-RA | 2164 | CG9347-RA | 1083..2000 | 934..16 | 4555 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13702027..13702667 | 934..293 | 3145 | 99.7 | Minus |
| 3R | 32079331 | 3R | 13702724..13703000 | 292..16 | 1385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:05:58 has no hits.
BS10007.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:24 Download gff for
BS10007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-PA | 945..1863 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:26 Download gff for
BS10007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9347-PA | 945..1863 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:52:18 Download gff for
BS10007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 1081..2000 | 16..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:35 Download gff for
BS10007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 1081..2000 | 16..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:35 Download gff for
BS10007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13702025..13702667 | 293..936 | 99 | -> | Minus |
| 3R | 13702724..13703000 | 16..292 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:52:18 Download gff for
BS10007.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9527747..9528389 | 293..936 | 99 | -> | Minus |
| arm_3R | 9528446..9528722 | 16..292 | 100 | | Minus |
BS10007.5prime Sequence
943 bp (790 high quality bases) assembled on 2006-04-19
> BS10007.5prime
GAAGTTATCAGTCGACATGGCAGCCGGTGTCTTCAAGAGTTTTATGCGCG
ACTTCTTTGCGGTGAAATACGATGAGCAGCGAAATGATCCGCAAGCGGAA
CGACTGGATGGCAACGGACGACTGTATCCCAACTGCTCGTCGGATGTGTG
GCTGCGATCCTGCGAGCGGGAGATAGTTGATCCCATTGAGGGCCATCACA
GCGGGCACATTCCCAAATGGATATGCGGTAGTCTGTTGCGCAATGGACCC
GGCAGCTGGAAGGTGGGCGACATGACCTTCGGCCATCTGTTCGACTGCTC
CGCCCTGCTGCACCGATTTGCCATTCGGAATGGACGCGTCACCTACCAGA
ATCGCTTCGTGGACACGGAAACACTGCGAAAGAATCGCTCTGCCCAGCGG
ATTGTGGTCACGGAGTTTGGCACAGCTGCTGTTCCGGATCCCTGTCACTC
GATCTTCGATAGATTTGCGGCCATTTTTCGACCGGATAGTGGAACGGATA
ACTCGATGATTTCCATATATCCTTTCGGGGATCAGTATTACACATTTACG
GAGACGCCTTTTATGCATAGAATAAATCCCTGCACTTTGGCCACCGAAGC
ACGAATCTGCACCACCGACTTCGTGGGCGTGGTGAACCACACATCGCATC
CGCATGTTCTTCCCAGTGGCACTGTCTACAACCTGGGCACCACAATGACC
AGATCTGGACCGGCATACACTATACTCAGTTTCCCGCACGGCGAGCAGAT
GTTCGAGGATGCTCATGTGGTGGCCACACTGCCGTGCCGCTGGAAACTGC
ATCCCGGTTATATGCACACCTTCGGCTTAACGGATCACTACTTTGTGATT
GTGGAGCAGCCGTTGTCCGTTTCGCTTACGGAGTATATCAAAGCCCAGCT
AGGTGGACAGAATTTATCGGCGTGTCTCAAGTGGTTCGAGGAT
BS10007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9347-PA | 1863 | ninaB-RA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaB-RA | 2164 | CG9347-RA | 137..1063 | 17..943 | 4635 | 100 | Plus |
| f-cup-RF | 2885 | CG9611-RF | 92..138 | 63..17 | 235 | 100 | Minus |
| f-cup-RD | 2532 | CG9611-RD | 92..138 | 63..17 | 235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13701068..13701577 | 61..570 | 2550 | 100 | Plus |
| 3R | 32079331 | 3R | 13701632..13702007 | 568..943 | 1880 | 100 | Plus |
| 3R | 32079331 | 3R | 13700701..13700747 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:48:23 has no hits.
BS10007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:25 Download gff for
BS10007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-PA | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:27 Download gff for
BS10007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9347-PA | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:03:15 Download gff for
BS10007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 137..1063 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:47 Download gff for
BS10007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 137..1063 | 17..943 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:47 Download gff for
BS10007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13700701..13700745 | 17..61 | 100 | -> | Plus |
| 3R | 13701069..13701577 | 62..570 | 100 | -> | Plus |
| 3R | 13701635..13702007 | 571..943 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:03:15 Download gff for
BS10007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9526423..9526467 | 17..61 | 100 | -> | Plus |
| arm_3R | 9526791..9527299 | 62..570 | 100 | -> | Plus |
| arm_3R | 9527357..9527729 | 571..943 | 100 | | Plus |
BS10007.complete Sequence
1895 bp assembled on 2007-11-30
GenBank Submission: FJ636524
> BS10007.complete
GAAGTTATCAGTCGACATGGCAGCCGGTGTCTTCAAGAGTTTTATGCGCG
ACTTCTTTGCGGTGAAATACGATGAGCAGCGAAATGATCCGCAAGCGGAA
CGACTGGATGGCAACGGACGACTGTATCCCAACTGCTCGTCGGATGTGTG
GCTGCGATCCTGCGAGCGGGAGATAGTTGATCCCATTGAGGGCCATCACA
GCGGGCACATTCCCAAATGGATATGCGGTAGTCTGTTGCGCAATGGACCC
GGCAGCTGGAAGGTGGGCGACATGACCTTCGGCCATCTGTTCGACTGCTC
CGCCCTGCTGCACCGATTTGCCATTCGGAATGGACGCGTCACCTACCAGA
ATCGCTTCGTGGACACGGAAACACTGCGAAAGAATCGCTCTGCCCAGCGG
ATTGTGGTCACGGAGTTTGGCACAGCTGCTGTTCCGGATCCCTGTCACTC
GATCTTCGATAGATTTGCGGCCATTTTTCGACCGGATAGTGGAACGGATA
ACTCGATGATTTCCATATATCCTTTCGGGGATCAGTATTACACATTTACG
GAGACGCCTTTTATGCATAGAATAAATCCCTGCACTTTGGCCACCGAAGC
ACGAATCTGCACCACCGACTTCGTGGGCGTGGTGAACCACACATCGCATC
CGCATGTTCTTCCCAGTGGCACTGTCTACAACCTGGGCACCACAATGACC
AGATCTGGACCGGCATACACTATACTCAGTTTCCCGCACGGCGAGCAGAT
GTTCGAGGATGCTCATGTGGTGGCCACACTGCCGTGCCGCTGGAAACTGC
ATCCCGGTTATATGCACACCTTCGGCTTAACGGATCACTACTTTGTGATT
GTGGAGCAGCCGTTGTCCGTTTCGCTTACGGAGTATATCAAAGCCCAGCT
AGGTGGACAGAATTTATCGGCGTGTCTCAAGTGGTTCGAGGATCGACCGA
CACTATTTCACCTTATAGATCGGGTTTCCGGCAAACTGGTGCAGACCTAC
GAATCGGAAGCCTTCTTCTACCTGCACATCATCAACTGCTTTGAACGGGA
TGGCCACGTGGTGGTGGACATTTGCAGCTACAGGAATCCCGAGATGATCA
ACTGCATGTATCTGGAGGCCATTGCCAATATGCAAACGAATCCCAATTAT
GCTACCCTCTTTCGTGGACGTCCCTTGAGATTCGTCCTGCCCTTGGGCAC
AATTCCTCCGGCAAGCATCGCCAAGCGGGGACTGGTCAAGTCCTTCTCCC
TTGCTGGACTAAGTGCTCCGCAGGTTTCTCGCACCATGAAGCACTCGGTC
TCGCAATATGCGGATATAACCTACATGCCCACCAATGGAAAGCAAGCCAC
TGCTGGAGAGGAAAGCCCCAAGCGAGATGCCAAACGTGGCCGCTATGAGG
AGGAGAATCTTGTCAATCTGGTTACCATGGAGGGCAGTCAAGCGGAGGCG
TTTCAGGGCACCAATGGCATCCAACTGCGTCCGGAAATGCTGTGTGATTG
GGGCTGTGAAACACCTAGGATCTATTATGAACGGTATATGGGCAAGAACT
ACCGATACTTCTACGCGATTAGCTCCGATGTGGATGCAGTGAATCCGGGC
ACCCTCATCAAGGTGGATGTGTGGAATAAGAGCTGTCTAACCTGGTGCGA
GGAGAATGTCTATCCCAGTGAGCCCATTTTTGTGCCTTCGCCGGATCCGA
AATCCGAGGACGATGGCGTTATCCTGGCCTCCATGGTGCTGGGCGGTCTC
AACGATCGCTATGTGGGCCTAATTGTGCTATGTGCCAAAACGATGACCGA
GCTGGGCCGTTGTGATTTCCATACCAATGGACCCGTGCCCAAGTGTCTCC
ATGGATGGTTTGCACCCAATGCCATTTAGAAGCTTTCTAGACCAT
BS10007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaB-RA | 1863 | CG9347-PA | 1..1863 | 17..1879 | 9315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaB-RA | 2164 | CG9347-RA | 137..2000 | 17..1880 | 9320 | 100 | Plus |
| f-cup-RF | 2885 | CG9611-RF | 92..138 | 63..17 | 235 | 100 | Minus |
| f-cup-RD | 2532 | CG9611-RD | 92..138 | 63..17 | 235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13701632..13702667 | 568..1603 | 5180 | 100 | Plus |
| 3R | 32079331 | 3R | 13701068..13701577 | 61..570 | 2550 | 100 | Plus |
| 3R | 32079331 | 3R | 13702724..13703000 | 1604..1880 | 1385 | 100 | Plus |
| 3R | 32079331 | 3R | 13700701..13700747 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:55:48 has no hits.
BS10007.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:43 Download gff for
BS10007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 1..1863 | 17..1879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:53 Download gff for
BS10007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 116..1979 | 17..1880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:53 Download gff for
BS10007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 137..1999 | 17..1879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:01 Download gff for
BS10007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 116..1978 | 17..1879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:03 Download gff for
BS10007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaB-RA | 137..1999 | 17..1879 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:03 Download gff for
BS10007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13700701..13700745 | 17..61 | 100 | -> | Plus |
| 3R | 13701069..13701577 | 62..570 | 100 | -> | Plus |
| 3R | 13701635..13702667 | 571..1603 | 100 | -> | Plus |
| 3R | 13702724..13702999 | 1604..1879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:53 Download gff for
BS10007.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9526423..9526467 | 17..61 | 100 | -> | Plus |
| arm_3R | 9526791..9527299 | 62..570 | 100 | -> | Plus |
| arm_3R | 9527357..9528389 | 571..1603 | 100 | -> | Plus |
| arm_3R | 9528446..9528721 | 1604..1879 | 100 | | Plus |
BS10007.pep Sequence
Translation from 16 to 1878
> BS10007.pep
MAAGVFKSFMRDFFAVKYDEQRNDPQAERLDGNGRLYPNCSSDVWLRSCE
REIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHR
FAIRNGRVTYQNRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRF
AAIFRPDSGTDNSMISIYPFGDQYYTFTETPFMHRINPCTLATEARICTT
DFVGVVNHTSHPHVLPSGTVYNLGTTMTRSGPAYTILSFPHGEQMFEDAH
VVATLPCRWKLHPGYMHTFGLTDHYFVIVEQPLSVSLTEYIKAQLGGQNL
SACLKWFEDRPTLFHLIDRVSGKLVQTYESEAFFYLHIINCFERDGHVVV
DICSYRNPEMINCMYLEAIANMQTNPNYATLFRGRPLRFVLPLGTIPPAS
IAKRGLVKSFSLAGLSAPQVSRTMKHSVSQYADITYMPTNGKQATAGEES
PKRDAKRGRYEEENLVNLVTMEGSQAEAFQGTNGIQLRPEMLCDWGCETP
RIYYERYMGKNYRYFYAISSDVDAVNPGTLIKVDVWNKSCLTWCEENVYP
SEPIFVPSPDPKSEDDGVILASMVLGGLNDRYVGLIVLCAKTMTELGRCD
FHTNGPVPKCLHGWFAPNAI*
BS10007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaB-PA | 620 | CG9347-PA | 1..620 | 1..620 | 3367 | 100 | Plus |
