Clone BS10010 Report

Search the DGRC for BS10010

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptAtg18b-RA
Protein status:BS10010.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10010.3prime Sequence

893 bp (806 high quality bases) assembled on 2006-04-19

> BS10010.3prime
ATGGTCTAGAAAGCTTTCAATCCTTAGCGGTAATTGCCACTGGAGGAAAT
TGTCGCTCATCGTAGAGCTTTGTTGGAGTGTCGATGGCATCGCAAAGCTT
GCGAAACTTGGCAGAATCAGACATTGCATCTGCCTGGTCACCTTTCAGGA
TGCTTGCATAGCTGTTGTCTTGCATCGGATCCGGATTCTCGATGAGCACA
CTAGCCGCACAGCTCTTTAGCATCGTAAGCGAAGGCTGCGTCACAGTTGA
CGGATTCGAAGGCTTAGTCTGCGACCTTTGCACGCTTTCGCTCAGCTCAA
GCTCTATTACATCCTCCAGGGCTCCGCGCAAGTCGTGGACAGACATCAGT
TTACAGGGACCACCCCGTTCCGCAGGAAACTCGTGCACGTACAGGAATCC
GTCCTCGCACGCAATCAGCAGACGTGGCTCCTTCTGAACACGGGTCAGGG
CACAGATGTGCTTTAGGCCGCCCTGAGCCAGCTGCACCGTAGCAAAGGAT
CGGTCCTGAGCTAATACTTCGCTGACTTGCGTGGGCAGCAGCAAAGATGA
CACAGCCTTGGAAAACATTCCGCCCCAGGAAGCGACAGGTCTACAGCTCT
CCTCTGCTGCTGTGGATGCCACTGCTTCCTTGGCAGAATTTTCGGACTTG
GCAGCTACATCGGCTATCGCTTTCAGCTCAACCGTCTCCACTGCCCGCGT
ATCGATCTTGAAAACGTGGACGGTCTCCGTGTTGGAGGAGGCGCAGAGGA
AGTCTCCACTGGCCGAGAAGACCAGTGAGGCAATGCGGACACAGCTGACG
CCCCTCCGGAATTCCTGCACCCGCTGGCCATTTTTTACACAAAAGACCCG
GATGACGGTCCCGCGCTCGGAGGCGGTGGCCAGCAGAGCTCCG

BS10010.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8678-PA 1416 CG8678-RA 540..1416 893..17 4385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-RB 2435 CG8678-RB 815..1691 893..17 4385 100 Minus
Atg18b-RA 2064 CG8678-RA 815..1691 893..17 4385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21213223..21213771 118..666 2745 100 Plus
2L 23513712 2L 21213917..21214146 664..893 1150 100 Plus
2L 23513712 2L 21213066..21213167 17..118 510 100 Plus
Blast to na_te.dros performed on 2015-02-01 10:23:49 has no hits.

BS10010.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:30 Download gff for BS10010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-PA 540..1416 17..893 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:36 Download gff for BS10010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-PA 540..1416 17..893 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:27:04 Download gff for BS10010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 815..1693 12..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:03:52 Download gff for BS10010.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg18b-RA 815..1693 12..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:03:52 Download gff for BS10010.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21213064..21213166 12..117 97 <- Plus
2L 21213223..21213768 118..663 100 <- Plus
2L 21213917..21214146 664..893 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:27:04 Download gff for BS10010.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21213064..21213166 12..117 97 <- Plus
arm_2L 21213223..21213768 118..663 100 <- Plus
arm_2L 21213917..21214146 664..893 100   Plus

BS10010.5prime Sequence

961 bp (803 high quality bases) assembled on 2006-04-19

> BS10010.5prime
GAAGTTATCAGTCGACATGACCACATATCAAATGAACTTCAACCAGGACT
TTACTTCCCTGTCCGTGCTGAGCCCCACGGGTCTACGCCTGTTCTCGATT
TCTAGCCAGGACAAGGTGGAGGAGATATTCGCCAAGGACAACACGGAGCA
AATCCGAATCGTGGAGCGCCTGTTCAACAGCTCACTAGTAGTGCTGGTCA
CCGCCCAGAAGCCCAACTGCCTCAAGATGCTGCACTTTAAGAAGAAGCAG
GACATCTGTAACTGCTTTTACCCGTCGGAGATCCTGTGCGTCCGCATGAA
CCGCCAACGCCTGATCGTCTGCCTGGCGGAGAGCATACACATCCACGACA
TCCGCGACATGAAGATCCTGCACTCCATCGAGAACATCGCTCCCAACGAG
CAGGGTCTATGCGCCCTCTCCCTCAACTCGCACCTGGCCTTCCCAGTCTG
CCAAACGAGCGGCGAGCTGCGCATCTTTAACGCCAGCAAGCTGCGCACGG
GCATGACCATCAGGGCCCACGACACGTCCCTCTCAGCTCTCGCTTTCTCG
CCCAGCGGAGCTCTGCTGGCCACCGCCTCCGAGCGCGGGACCGTCATCCG
GGTCTTTTGTGTAAAAAATGGCCAGCGGGTGCAGGAATTCCGGAGGGGCG
TCAGCTGTGTCCGCATTGCCTCACTGGTCTTCTCGGCCAGTGGAGACTTC
CTCTGCGCCTCCTCCAACACGGAGACCGTCCACGTTTTCAAGATCGATAC
GCGGGCAGTGGAGACGGTTGAGCTGAAAGCGATAGCCGATGTAGCTGCCA
AGTCCGAAAATTCTGCCAAGGAAGCAGTGGCATCCACAGCAGCAGAGGAG
AGCTGTAGACCTGTCGCTTCTGGGGCGGAATGTTTTCCAGGCTGTGTCAT
CTTTGCTGCTGCCCACGCAAGTCAGCGAAATATTAGCTCAAGACCGATCT
TTTGCTACGGT

BS10010.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8678-PA 1416 CG8678-RA 1..854 17..870 4270 100 Plus
CG8678-PA 1416 CG8678-RA 875..947 889..961 290 95.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-RB 2435 CG8678-RB 276..1222 17..961 4640 99.5 Plus
Atg18b-RA 2064 CG8678-RA 276..1222 17..961 4640 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21213917..21214647 785..55 3655 100 Minus
2L 23513712 2L 21213591..21213771 961..783 760 97.2 Minus
2L 23513712 2L 21220260..21220297 54..17 190 100 Minus
Blast to na_te.dros performed on 2015-02-10 03:46:36 has no hits.

BS10010.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:31 Download gff for BS10010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-PA 1..947 17..961 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:37 Download gff for BS10010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-PA 1..947 17..961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:35 Download gff for BS10010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 271..1222 9..961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:31 Download gff for BS10010.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg18b-RA 271..1222 9..961 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:31 Download gff for BS10010.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21213591..21213768 786..961 97 <- Minus
2L 21213917..21214647 55..785 100 <- Minus
2L 21220260..21220302 9..54 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:35 Download gff for BS10010.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21213591..21213768 786..961 97 <- Minus
arm_2L 21213917..21214647 55..785 100 <- Minus
arm_2L 21220260..21220302 9..54 93   Minus

BS10010.complete Sequence

1448 bp (1448 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636525

> BS10010.complete
GAAGTTATCAGTCGACATGACCACATATCAAATGAACTTCAACCAGGACT
TTACTTCCCTGTCCGTGCTGAGCCCCACGGGTCTACGCCTGTTCTCGATT
TCTAGCCAGGACAAGGTGGAGGAGATATTCGCCAAGGACAACACGGAGCA
AATCCGAATCGTGGAGCGCCTGTTCAACAGCTCACTAGTAGTGCTGGTCA
CCGCCCAGAAGCCCAACTGCCTCAAGATGCTGCACTTTAAGAAGAAGCAG
GACATCTGTAACTGCTTTTACCCGTCGGAGATCCTGTGCGTCCGCATGAA
CCGCCAACGCCTGATCGTCTGCCTGGCGGAGAGCATACACATCCACGACA
TCCGCGACATGAAGATCCTGCACTCCATCGAGAACATCGCTCCCAACGAG
CAGGGTCTATGCGCCCTCTCCCTCAACTCGCACCTGGCCTTCCCAGTCTG
CCAAACGAGCGGCGAGCTGCGCATCTTTAACGCCAGCAAGCTGCGCACGG
GCATGACCATCAGGGCCCACGACACGTCCCTCTCAGCTCTCGCTTTCTCG
CCCAGCGGAGCTCTGCTGGCCACCGCCTCCGAGCGCGGGACCGTCATCCG
GGTCTTTTGTGTAAAAAATGGCCAGCGGGTGCAGGAATTCCGGAGGGGCG
TCAGCTGTGTCCGCATTGCCTCACTGGTCTTCTCGGCCAGTGGAGACTTC
CTCTGCGCCTCCTCCAACACGGAGACCGTCCACGTTTTCAAGATCGATAC
GCGGGCAGTGGAGACGGTTGAGCTGAAAGCGATAGCCGATGTAGCTGCCA
AGTCCGAAAATTCTGCCAAGGAAGCAGTGGCATCCACAGCAGCAGAGGAG
AGCTGTAGACCTGTCGCTTCCTGGGGCGGAATGTTTTCCAAGGCTGTGTC
ATCTTTGCTGCTGCCCACGCAAGTCAGCGAAGTATTAGCTCAGGACCGAT
CCTTTGCTACGGTGCAGCTGGCTCAGGGCGGCCTAAAGCACATCTGTGCC
CTGACCCGTGTTCAGAAGGAGCCACGTCTGCTGATTGCGTGCGAGGACGG
ATTCCTGTACGTGCACGAGTTTCCTGCGGAACGGGGTGGTCCCTGTAAAC
TGATGTCTGTCCACGACTTGCGCGGAGCCCTGGAGGATGTAATAGAGCTT
GAGCTGAGCGAAAGCGTGCAAAGGTCGCAGACTAAGCCTTCGAATCCGTC
AACTGTGACGCAGCCTTCGCTTACGATGCTAAAGAGCTGTGCGGCTAGTG
TGCTCATCGAGAATCCGGATCCGATGCAAGACAACAGCTATGCAAGCATC
CTGAAAGGTGACCAGGCAGATGCAATGTCTGATTCTGCCAAGTTTCGCAA
GCTTTGCGATGCCATCGACACTCCAACAAAGCTCTACGATGAGCGACAAT
TTCCTCCAGTGGCAATTACCGCTAAGGATTGAAAGCTTTCTAGACCAT

BS10010.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-RB 1416 CG8678-PB 1..1416 17..1432 7080 100 Plus
Atg18b-RA 1416 CG8678-PA 1..1416 17..1432 7080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-RB 2435 CG8678-RB 276..1691 17..1432 7080 100 Plus
Atg18b-RA 2064 CG8678-RA 276..1691 17..1432 7080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21213917..21214647 785..55 3655 100 Minus
2L 23513712 2L 21213223..21213771 1331..783 2745 100 Minus
2L 23513712 2L 21213066..21213167 1432..1331 510 100 Minus
2L 23513712 2L 21220260..21220297 54..17 190 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:12:49 has no hits.

BS10010.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:48 Download gff for BS10010.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 1..1416 17..1432 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:36 Download gff for BS10010.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 266..1688 9..1437 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:35 Download gff for BS10010.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 276..1690 17..1431 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:48 Download gff for BS10010.complete
Subject Subject Range Query Range Percent Splice Strand
CG8678-RA 266..1688 9..1437 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:28 Download gff for BS10010.complete
Subject Subject Range Query Range Percent Splice Strand
Atg18b-RA 276..1690 17..1431 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:28 Download gff for BS10010.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21213223..21213768 786..1331 100 <- Minus
2L 21213067..21213166 1332..1431 100 <- Minus
2L 21213917..21214647 55..785 100 <- Minus
2L 21220260..21220297 17..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:35 Download gff for BS10010.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21213067..21213166 1332..1431 100 <- Minus
arm_2L 21213223..21213768 786..1331 100 <- Minus
arm_2L 21213917..21214647 55..785 100 <- Minus
arm_2L 21220260..21220297 17..54 100   Minus

BS10010.pep Sequence

Translation from 16 to 1431

> BS10010.pep
MTTYQMNFNQDFTSLSVLSPTGLRLFSISSQDKVEEIFAKDNTEQIRIVE
RLFNSSLVVLVTAQKPNCLKMLHFKKKQDICNCFYPSEILCVRMNRQRLI
VCLAESIHIHDIRDMKILHSIENIAPNEQGLCALSLNSHLAFPVCQTSGE
LRIFNASKLRTGMTIRAHDTSLSALAFSPSGALLATASERGTVIRVFCVK
NGQRVQEFRRGVSCVRIASLVFSASGDFLCASSNTETVHVFKIDTRAVET
VELKAIADVAAKSENSAKEAVASTAAEESCRPVASWGGMFSKAVSSLLLP
TQVSEVLAQDRSFATVQLAQGGLKHICALTRVQKEPRLLIACEDGFLYVH
EFPAERGGPCKLMSVHDLRGALEDVIELELSESVQRSQTKPSNPSTVTQP
SLTMLKSCAASVLIENPDPMQDNSYASILKGDQADAMSDSAKFRKLCDAI
DTPTKLYDERQFPPVAITAKD*

BS10010.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
Atg18b-PB 471 CG8678-PB 1..471 1..471 2381 100 Plus
Atg18b-PA 471 CG8678-PA 1..471 1..471 2381 100 Plus
Atg18a-PD 435 CG7986-PD 17..427 6..432 812 42.8 Plus
Atg18a-PF 372 CG7986-PF 17..369 6..380 807 45.9 Plus
Atg18a-PG 377 CG7986-PG 17..374 6..380 794 45.6 Plus