Clone Sequence Records
BS10010.3prime Sequence
893 bp (806 high quality bases) assembled on 2006-04-19
> BS10010.3prime
ATGGTCTAGAAAGCTTTCAATCCTTAGCGGTAATTGCCACTGGAGGAAAT
TGTCGCTCATCGTAGAGCTTTGTTGGAGTGTCGATGGCATCGCAAAGCTT
GCGAAACTTGGCAGAATCAGACATTGCATCTGCCTGGTCACCTTTCAGGA
TGCTTGCATAGCTGTTGTCTTGCATCGGATCCGGATTCTCGATGAGCACA
CTAGCCGCACAGCTCTTTAGCATCGTAAGCGAAGGCTGCGTCACAGTTGA
CGGATTCGAAGGCTTAGTCTGCGACCTTTGCACGCTTTCGCTCAGCTCAA
GCTCTATTACATCCTCCAGGGCTCCGCGCAAGTCGTGGACAGACATCAGT
TTACAGGGACCACCCCGTTCCGCAGGAAACTCGTGCACGTACAGGAATCC
GTCCTCGCACGCAATCAGCAGACGTGGCTCCTTCTGAACACGGGTCAGGG
CACAGATGTGCTTTAGGCCGCCCTGAGCCAGCTGCACCGTAGCAAAGGAT
CGGTCCTGAGCTAATACTTCGCTGACTTGCGTGGGCAGCAGCAAAGATGA
CACAGCCTTGGAAAACATTCCGCCCCAGGAAGCGACAGGTCTACAGCTCT
CCTCTGCTGCTGTGGATGCCACTGCTTCCTTGGCAGAATTTTCGGACTTG
GCAGCTACATCGGCTATCGCTTTCAGCTCAACCGTCTCCACTGCCCGCGT
ATCGATCTTGAAAACGTGGACGGTCTCCGTGTTGGAGGAGGCGCAGAGGA
AGTCTCCACTGGCCGAGAAGACCAGTGAGGCAATGCGGACACAGCTGACG
CCCCTCCGGAATTCCTGCACCCGCTGGCCATTTTTTACACAAAAGACCCG
GATGACGGTCCCGCGCTCGGAGGCGGTGGCCAGCAGAGCTCCG
BS10010.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8678-PA | 1416 | CG8678-RA | 540..1416 | 893..17 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18b-RB | 2435 | CG8678-RB | 815..1691 | 893..17 | 4385 | 100 | Minus |
Atg18b-RA | 2064 | CG8678-RA | 815..1691 | 893..17 | 4385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21213223..21213771 | 118..666 | 2745 | 100 | Plus |
2L | 23513712 | 2L | 21213917..21214146 | 664..893 | 1150 | 100 | Plus |
2L | 23513712 | 2L | 21213066..21213167 | 17..118 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 10:23:49 has no hits.
BS10010.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:30 Download gff for
BS10010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-PA | 540..1416 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:36 Download gff for
BS10010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-PA | 540..1416 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:27:04 Download gff for
BS10010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 815..1693 | 12..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:03:52 Download gff for
BS10010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18b-RA | 815..1693 | 12..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:03:52 Download gff for
BS10010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21213064..21213166 | 12..117 | 97 | <- | Plus |
2L | 21213223..21213768 | 118..663 | 100 | <- | Plus |
2L | 21213917..21214146 | 664..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:27:04 Download gff for
BS10010.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21213064..21213166 | 12..117 | 97 | <- | Plus |
arm_2L | 21213223..21213768 | 118..663 | 100 | <- | Plus |
arm_2L | 21213917..21214146 | 664..893 | 100 | | Plus |
BS10010.5prime Sequence
961 bp (803 high quality bases) assembled on 2006-04-19
> BS10010.5prime
GAAGTTATCAGTCGACATGACCACATATCAAATGAACTTCAACCAGGACT
TTACTTCCCTGTCCGTGCTGAGCCCCACGGGTCTACGCCTGTTCTCGATT
TCTAGCCAGGACAAGGTGGAGGAGATATTCGCCAAGGACAACACGGAGCA
AATCCGAATCGTGGAGCGCCTGTTCAACAGCTCACTAGTAGTGCTGGTCA
CCGCCCAGAAGCCCAACTGCCTCAAGATGCTGCACTTTAAGAAGAAGCAG
GACATCTGTAACTGCTTTTACCCGTCGGAGATCCTGTGCGTCCGCATGAA
CCGCCAACGCCTGATCGTCTGCCTGGCGGAGAGCATACACATCCACGACA
TCCGCGACATGAAGATCCTGCACTCCATCGAGAACATCGCTCCCAACGAG
CAGGGTCTATGCGCCCTCTCCCTCAACTCGCACCTGGCCTTCCCAGTCTG
CCAAACGAGCGGCGAGCTGCGCATCTTTAACGCCAGCAAGCTGCGCACGG
GCATGACCATCAGGGCCCACGACACGTCCCTCTCAGCTCTCGCTTTCTCG
CCCAGCGGAGCTCTGCTGGCCACCGCCTCCGAGCGCGGGACCGTCATCCG
GGTCTTTTGTGTAAAAAATGGCCAGCGGGTGCAGGAATTCCGGAGGGGCG
TCAGCTGTGTCCGCATTGCCTCACTGGTCTTCTCGGCCAGTGGAGACTTC
CTCTGCGCCTCCTCCAACACGGAGACCGTCCACGTTTTCAAGATCGATAC
GCGGGCAGTGGAGACGGTTGAGCTGAAAGCGATAGCCGATGTAGCTGCCA
AGTCCGAAAATTCTGCCAAGGAAGCAGTGGCATCCACAGCAGCAGAGGAG
AGCTGTAGACCTGTCGCTTCTGGGGCGGAATGTTTTCCAGGCTGTGTCAT
CTTTGCTGCTGCCCACGCAAGTCAGCGAAATATTAGCTCAAGACCGATCT
TTTGCTACGGT
BS10010.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8678-PA | 1416 | CG8678-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
CG8678-PA | 1416 | CG8678-RA | 875..947 | 889..961 | 290 | 95.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18b-RB | 2435 | CG8678-RB | 276..1222 | 17..961 | 4640 | 99.5 | Plus |
Atg18b-RA | 2064 | CG8678-RA | 276..1222 | 17..961 | 4640 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21213917..21214647 | 785..55 | 3655 | 100 | Minus |
2L | 23513712 | 2L | 21213591..21213771 | 961..783 | 760 | 97.2 | Minus |
2L | 23513712 | 2L | 21220260..21220297 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:46:36 has no hits.
BS10010.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:31 Download gff for
BS10010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-PA | 1..947 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:37 Download gff for
BS10010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-PA | 1..947 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:35 Download gff for
BS10010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 271..1222 | 9..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:31 Download gff for
BS10010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18b-RA | 271..1222 | 9..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:31 Download gff for
BS10010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21213591..21213768 | 786..961 | 97 | <- | Minus |
2L | 21213917..21214647 | 55..785 | 100 | <- | Minus |
2L | 21220260..21220302 | 9..54 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:35 Download gff for
BS10010.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21213591..21213768 | 786..961 | 97 | <- | Minus |
arm_2L | 21213917..21214647 | 55..785 | 100 | <- | Minus |
arm_2L | 21220260..21220302 | 9..54 | 93 | | Minus |
BS10010.complete Sequence
1448 bp (1448 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636525
> BS10010.complete
GAAGTTATCAGTCGACATGACCACATATCAAATGAACTTCAACCAGGACT
TTACTTCCCTGTCCGTGCTGAGCCCCACGGGTCTACGCCTGTTCTCGATT
TCTAGCCAGGACAAGGTGGAGGAGATATTCGCCAAGGACAACACGGAGCA
AATCCGAATCGTGGAGCGCCTGTTCAACAGCTCACTAGTAGTGCTGGTCA
CCGCCCAGAAGCCCAACTGCCTCAAGATGCTGCACTTTAAGAAGAAGCAG
GACATCTGTAACTGCTTTTACCCGTCGGAGATCCTGTGCGTCCGCATGAA
CCGCCAACGCCTGATCGTCTGCCTGGCGGAGAGCATACACATCCACGACA
TCCGCGACATGAAGATCCTGCACTCCATCGAGAACATCGCTCCCAACGAG
CAGGGTCTATGCGCCCTCTCCCTCAACTCGCACCTGGCCTTCCCAGTCTG
CCAAACGAGCGGCGAGCTGCGCATCTTTAACGCCAGCAAGCTGCGCACGG
GCATGACCATCAGGGCCCACGACACGTCCCTCTCAGCTCTCGCTTTCTCG
CCCAGCGGAGCTCTGCTGGCCACCGCCTCCGAGCGCGGGACCGTCATCCG
GGTCTTTTGTGTAAAAAATGGCCAGCGGGTGCAGGAATTCCGGAGGGGCG
TCAGCTGTGTCCGCATTGCCTCACTGGTCTTCTCGGCCAGTGGAGACTTC
CTCTGCGCCTCCTCCAACACGGAGACCGTCCACGTTTTCAAGATCGATAC
GCGGGCAGTGGAGACGGTTGAGCTGAAAGCGATAGCCGATGTAGCTGCCA
AGTCCGAAAATTCTGCCAAGGAAGCAGTGGCATCCACAGCAGCAGAGGAG
AGCTGTAGACCTGTCGCTTCCTGGGGCGGAATGTTTTCCAAGGCTGTGTC
ATCTTTGCTGCTGCCCACGCAAGTCAGCGAAGTATTAGCTCAGGACCGAT
CCTTTGCTACGGTGCAGCTGGCTCAGGGCGGCCTAAAGCACATCTGTGCC
CTGACCCGTGTTCAGAAGGAGCCACGTCTGCTGATTGCGTGCGAGGACGG
ATTCCTGTACGTGCACGAGTTTCCTGCGGAACGGGGTGGTCCCTGTAAAC
TGATGTCTGTCCACGACTTGCGCGGAGCCCTGGAGGATGTAATAGAGCTT
GAGCTGAGCGAAAGCGTGCAAAGGTCGCAGACTAAGCCTTCGAATCCGTC
AACTGTGACGCAGCCTTCGCTTACGATGCTAAAGAGCTGTGCGGCTAGTG
TGCTCATCGAGAATCCGGATCCGATGCAAGACAACAGCTATGCAAGCATC
CTGAAAGGTGACCAGGCAGATGCAATGTCTGATTCTGCCAAGTTTCGCAA
GCTTTGCGATGCCATCGACACTCCAACAAAGCTCTACGATGAGCGACAAT
TTCCTCCAGTGGCAATTACCGCTAAGGATTGAAAGCTTTCTAGACCAT
BS10010.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18b-RB | 1416 | CG8678-PB | 1..1416 | 17..1432 | 7080 | 100 | Plus |
Atg18b-RA | 1416 | CG8678-PA | 1..1416 | 17..1432 | 7080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18b-RB | 2435 | CG8678-RB | 276..1691 | 17..1432 | 7080 | 100 | Plus |
Atg18b-RA | 2064 | CG8678-RA | 276..1691 | 17..1432 | 7080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21213917..21214647 | 785..55 | 3655 | 100 | Minus |
2L | 23513712 | 2L | 21213223..21213771 | 1331..783 | 2745 | 100 | Minus |
2L | 23513712 | 2L | 21213066..21213167 | 1432..1331 | 510 | 100 | Minus |
2L | 23513712 | 2L | 21220260..21220297 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:12:49 has no hits.
BS10010.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:48 Download gff for
BS10010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 1..1416 | 17..1432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:36 Download gff for
BS10010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 266..1688 | 9..1437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:35 Download gff for
BS10010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 276..1690 | 17..1431 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:48 Download gff for
BS10010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8678-RA | 266..1688 | 9..1437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:28 Download gff for
BS10010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg18b-RA | 276..1690 | 17..1431 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:28 Download gff for
BS10010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21213223..21213768 | 786..1331 | 100 | <- | Minus |
2L | 21213067..21213166 | 1332..1431 | 100 | <- | Minus |
2L | 21213917..21214647 | 55..785 | 100 | <- | Minus |
2L | 21220260..21220297 | 17..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:35 Download gff for
BS10010.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21213067..21213166 | 1332..1431 | 100 | <- | Minus |
arm_2L | 21213223..21213768 | 786..1331 | 100 | <- | Minus |
arm_2L | 21213917..21214647 | 55..785 | 100 | <- | Minus |
arm_2L | 21220260..21220297 | 17..54 | 100 | | Minus |
BS10010.pep Sequence
Translation from 16 to 1431
> BS10010.pep
MTTYQMNFNQDFTSLSVLSPTGLRLFSISSQDKVEEIFAKDNTEQIRIVE
RLFNSSLVVLVTAQKPNCLKMLHFKKKQDICNCFYPSEILCVRMNRQRLI
VCLAESIHIHDIRDMKILHSIENIAPNEQGLCALSLNSHLAFPVCQTSGE
LRIFNASKLRTGMTIRAHDTSLSALAFSPSGALLATASERGTVIRVFCVK
NGQRVQEFRRGVSCVRIASLVFSASGDFLCASSNTETVHVFKIDTRAVET
VELKAIADVAAKSENSAKEAVASTAAEESCRPVASWGGMFSKAVSSLLLP
TQVSEVLAQDRSFATVQLAQGGLKHICALTRVQKEPRLLIACEDGFLYVH
EFPAERGGPCKLMSVHDLRGALEDVIELELSESVQRSQTKPSNPSTVTQP
SLTMLKSCAASVLIENPDPMQDNSYASILKGDQADAMSDSAKFRKLCDAI
DTPTKLYDERQFPPVAITAKD*
BS10010.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg18b-PB | 471 | CG8678-PB | 1..471 | 1..471 | 2381 | 100 | Plus |
Atg18b-PA | 471 | CG8678-PA | 1..471 | 1..471 | 2381 | 100 | Plus |
Atg18a-PD | 435 | CG7986-PD | 17..427 | 6..432 | 812 | 42.8 | Plus |
Atg18a-PF | 372 | CG7986-PF | 17..369 | 6..380 | 807 | 45.9 | Plus |
Atg18a-PG | 377 | CG7986-PG | 17..374 | 6..380 | 794 | 45.6 | Plus |