Clone BS10011 Report

Search the DGRC for BS10011

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:11
Vector:pDNR-Dual
Associated Gene/Transcripthmw-RA
Protein status:BS10011.pep: full length peptide match
Sequenced Size:1848

Clone Sequence Records

BS10011.3prime Sequence

894 bp (802 high quality bases) assembled on 2006-04-19

> BS10011.3prime
ATGGTCTAGGAAAGCTTTCACTTGAATTGCGGTCGCCGTGTGCCGATGGC
CTCCAGTTTCCGCTTGAGCAGATCGTTGTCCAGGTCGATCTGGCGCTGAT
TCTTCTTCCGGTTCACAGCTGCGCTGGACAGTCGTGGCGCTGGAGGTGTC
TGTCGCTTCTCGGGCCCATTGATCTTTATGCTACTGGTGCTAGCCTTGAT
CGTCGCCGTGGGCTTCACAGTCATCATCTTGCGCAAAAGAATCTGATTCT
GGCGCTCGATCTCGCGCACTTGGGGATTCGTAAAGCTAAAGCTTTTGCGC
CCAAGGTTTTTATAGTTAATCTTATCATTAGAGCAGCGGGAACGCGACAC
ATTGATTTGATACTCGCAACCGTCGCTGTTGAAGGTGCTTGGAGTTCCGC
TAACGGCTCGCCTGTTTAACTCCATTGGTTTGCGCTGTTGTGGATGCCTC
ATGAGTCCGTCGCCCTGGCCACATTCGTCTACGAGGTAGCCTTCGCCCAA
GCCGAAGTTCGCTGCCAGGTCATGGGGCAACTCGTGACCCATATCCAGTT
TCTGCTCGTGTTCAATTAAATCCGATTCCGAGGGACATCTGCATTTGGGT
CTGGGTAGCTTGGAAGATCGCGTCGTGAGTAGTGCCTCCTGAGAACGCTC
CATCCGCATTGTCAGGGGGGGAATTCCTCCACCCAAGCTCCTAGCACTGG
TCATAGTCGTTTCCGTCATCGATGACATCTCGGATTCAGTGTCCCCGCGC
CTGTCACTTCGTTGCTGCAACATCTCCGTGGCCATGGGCAGCTGCTCGAA
GGCTTGGCTATTTGGCGCTCCTCCATTGATCTGGAATGACTTCATGATCA
ATTCCGACATTTGGGTCATCTGCTGCTCCAGGTACCGAACCCTC

BS10011.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7669-PA 1815 CG7669-RA 939..1815 894..18 4335 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
hmw-RA 2041 CG7669-RA 1071..1947 894..18 4355 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18363191..18363769 894..316 2865 99.7 Minus
3R 32079331 3R 18363824..18363983 315..156 800 100 Minus
3R 32079331 3R 18364044..18364183 157..18 700 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:45:38 has no hits.

BS10011.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:32 Download gff for BS10011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7669-PA 939..1815 18..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:39 Download gff for BS10011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7669-PA 939..1815 18..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:25:33 Download gff for BS10011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 1071..1954 9..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:54 Download gff for BS10011.3prime
Subject Subject Range Query Range Percent Splice Strand
hmw-RA 1071..1954 9..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:54 Download gff for BS10011.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18364046..18364190 9..155 97   Minus
3R 18363191..18363769 316..894 99 -> Minus
3R 18363824..18363983 156..315 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:25:33 Download gff for BS10011.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14188913..14189491 316..894 99 -> Minus
arm_3R 14189546..14189705 156..315 100 -> Minus
arm_3R 14189768..14189912 9..155 97   Minus

BS10011.5prime Sequence

847 bp (797 high quality bases) assembled on 2006-04-19

> BS10011.5prime
GAAGTTATCAGTCGACATGTCGGGGGCTGGAGAACACTCAGATGAAGAGT
CCTATGGAGAGGAGTCCTTCGAGGAGGACTCGGAGTCGGAGGTGGAGGTG
GAGGAAGAAGAGATTGAGTATATTGAGCCAGAGGAGTCAAAACCAAGTGA
CGCTCTTCTGTTGGGGGAGAGCGACACCCAAAGCGAGAGCGATGTGAAAG
AAGAGTTTCTTAGCGGCAACCCACACGCCCGTCGCTATTTGGGCGCCCGA
GTGGTGTCCTACCTGAGTTCCTCCTCTGACGACGAAAGCCAAGTGGTCAT
CACCAAGACGGTAGCCGAGGTAAATCAACTAAGTCTGCGAGTGGACACGC
CTCCGGAGGATGAGACGCCCTCGGTGCGCACTCTGATGCCAGGCAGTGCC
CATTCTCGGGTTAAGGATGAGGACGAGGCTGAAGACGAGGATGATGACGA
AGGTGATGGCGAAAATGATAACGATAATGAGGACGAGAATGATGACGAGG
ATGCTGAAGTCGAGGAAATCGAAGAAGAGGAGGAAGAAATTCCAGGAGAC
GAAGACGACGCCCAAAGCGATGGATCCATGGGTCGTCAATCCGCCGACGA
CAGCGACGAGGAGGAGGGCACGGATGTGGAAGTGGAGCAGCTGGAGGAGG
ACGAACCAATTGTAACAGCTGTGTGCAAAAAGACGGTCCAGAAGGAGTTA
CCACCGCCCCAGAAGGACATTGTTTCGCTGGTCGATGCCAGTGATAACAG
TAGTGAGCACAGTGTGGTCACCATGTGTGCATCAGGAGACGAAACAGACA
ACACCTTGGTGAAGTATCCTAGATTACGAAAGCAGCACCCACTTACT

BS10011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7669-PA 1815 CG7669-RA 1..831 17..847 4130 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
hmw-RA 2041 CG7669-RA 133..963 17..847 4140 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18362402..18363016 221..835 3075 100 Plus
3R 32079331 3R 18362126..18362329 17..220 1020 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:52:13 has no hits.

BS10011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:33 Download gff for BS10011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7669-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:41 Download gff for BS10011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7669-PA 1..831 17..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:15 Download gff for BS10011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 129..963 9..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:17:19 Download gff for BS10011.5prime
Subject Subject Range Query Range Percent Splice Strand
hmw-RA 129..963 9..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:17:19 Download gff for BS10011.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18362122..18362329 9..220 98 -> Plus
3R 18362402..18363016 221..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:15 Download gff for BS10011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14187844..14188051 9..220 98 -> Plus
arm_3R 14188124..14188738 221..835 100   Plus

BS10011.complete Sequence

1848 bp assembled on 2008-08-14

GenBank Submission: FJ636526

> BS10011.complete
GAAGTTATCAGTCGACATGTCGGGGGCTGGAGAACACTCAGATGAAGAGT
CCTATGGAGAGGAGTCCTTCGAGGAGGACTCGGAGTCGGAGGTGGAGGTG
GAGGAAGAAGAGATTGAGTATATTGAGCCAGAGGAGTCAAAACCAAGTGA
CGCTCTTCTGTTGGGGGAGAGCGACACCCAAAGCGAGAGCGATGTGAAAG
AAGAGTTTCTTAGCGGCAACCCACACGCCCGTCGCTATTTGGGCGCCCGA
GTGGTGTCCTACCTGAGTTCCTCCTCTGACGACGAAAGCCAAGTGGTCAT
CACCAAGACGGTAGCCGAGGTAAATCAACTAAGTCTGCGAGTGGACACGC
CTCCGGAGGATGAGACGCCCTCGGTGCGCACTCTGATGCCAGGCAGTGCC
CATTCTCGGGTTAAGGATGAGGACGAGGCTGAAGACGAGGATGATGACGA
AGGTGATGGCGAAAATGATAACGATAATGAGGACGAGAATGATGACGAGG
ATGCTGAAGTCGAGGAAATCGAAGAAGAGGAGGAAGAAATTCCAGGAGAC
GAAGACGACGCCCAAAGCGATGGATCCATGGGTCGTCAATCCGCCGACGA
CAGCGACGAGGAGGAGGGCACGGATGTGGAAGTGGAGCAGCTGGAGGAGG
ACGAACCAATTGTAACAGCTGTGTGCAAAAAGACGGTCCAGAAGGAGTTA
CCACCGCCCCAGAAGGACATTGTTTCGCTGGTCGATGCCAGTGATAACAG
TAGTGAGCACAGTGTGGTCACCATGTGTGCATCAGGAGACGAAACAGACA
ACACCTTGGTGAAGTATCCTAGATTACGAAAGCAGCAACCACTTACTGCT
AAGGATTCGCAATCGCTAAAAGAGCAGGAAGAACCGGAAGAACCGGAACA
ACCCGAAGAAAATCAAACAGAAGAACACATGCCAACATCACAGCCCGATC
TGGCGAGGGTTCGGTACCTGGAGCAGCAGATGACCCAAATGTCGGAATTG
ATCATGAAGTCATTCCAGATCAATGGAGGAGCGCCAAATAGCCAAGCCTT
CGAGCAGCTTGCCATGGCCACGGAGATGTTGCAGCAACGAAGTGACAGGC
GCGGGGACACTGAATCCGAGATGTCATCGATGACGGAAACGACTATGACC
AGTGCTAGGAGCTTGGGTGGAGGAATTCCCCCCCTGACAATGCGGATGGA
GCGTTCTCAGGAGGCACTACTCACGACGCGATCTTCCAAGCTACCCAGAC
CCAAATGCAGATGTCCCTCGGAATCGGATTTAATTGAACACGAGCAGAAA
CTGGATATGGGTCACGAGTTGCCCCATGACCTGGCAGCGAACTTCGGCTT
GGGCGAAGGCTACCTCGTAGACGAATGTGGCCAGGGCGACGGACTCATGA
GGCATCCACAACAGCGCAAACCAATGGAGTTAAACAGGCGAGCCGTTAGC
GGAACTCCAAGCACCTTCAACAGCGACGGTTGCGAGTATCAAATCAATGT
GTCGCGTTCCCGCTGCTCTAATGATAAGATTAACTATAAAAACCTTGGGC
GCAAAAGCTTTAGCTTTACGAATCCCCAAGTGCGCGAGATCGAGCGCCAG
AATCAGATTCTTTTGCGCAAGATGATGACTGTGAAGCCCACGGCGACGAT
CAAGGCTAGCACCAGTAGCATAAAGATCAATGGGCCCGAGAAGCGACAGA
CACCTCCAGCGCCACGACTGTCCAGCGCAGCTGTGAACCGGAAGAAGAAT
CAGCGCCAGATCGACCTGGACAACGATCTGCTCAAGCGGAAACTGGAGGC
CATCGGCACACGGCGACCGCAATTCAAGTGAAAGCTTTCCTAGACCAT

BS10011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
hmw-RA 1815 CG7669-PA 1..1815 17..1831 9075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
hmw-RA 2041 CG7669-RA 133..1947 17..1831 9075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18363069..18363769 833..1533 3505 100 Plus
3R 32079331 3R 18362402..18363016 221..835 3075 100 Plus
3R 32079331 3R 18362126..18362329 17..220 1020 100 Plus
3R 32079331 3R 18363824..18363983 1534..1693 800 100 Plus
3R 32079331 3R 18364044..18364183 1692..1831 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:06:53 has no hits.

BS10011.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:41 Download gff for BS10011.complete
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 129..1954 9..1840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:24 Download gff for BS10011.complete
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 133..1946 17..1830 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:23 Download gff for BS10011.complete
Subject Subject Range Query Range Percent Splice Strand
CG7669-RA 133..1946 17..1830 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:49 Download gff for BS10011.complete
Subject Subject Range Query Range Percent Splice Strand
hmw-RA 133..1946 17..1830 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:49 Download gff for BS10011.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18363824..18363983 1534..1693 100 -> Plus
3R 18364046..18364182 1694..1830 100   Plus
3R 18362126..18362329 17..220 100 -> Plus
3R 18362402..18363016 221..835 100 -> Plus
3R 18363072..18363769 836..1533 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:24 Download gff for BS10011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14187848..14188051 17..220 100 -> Plus
arm_3R 14188124..14188738 221..835 100 -> Plus
arm_3R 14188794..14189491 836..1533 100 -> Plus
arm_3R 14189546..14189705 1534..1693 100 -> Plus
arm_3R 14189768..14189904 1694..1830 100   Plus

BS10011.pep Sequence

Translation from 16 to 1830

> BS10011.pep
MSGAGEHSDEESYGEESFEEDSESEVEVEEEEIEYIEPEESKPSDALLLG
ESDTQSESDVKEEFLSGNPHARRYLGARVVSYLSSSSDDESQVVITKTVA
EVNQLSLRVDTPPEDETPSVRTLMPGSAHSRVKDEDEAEDEDDDEGDGEN
DNDNEDENDDEDAEVEEIEEEEEEIPGDEDDAQSDGSMGRQSADDSDEEE
GTDVEVEQLEEDEPIVTAVCKKTVQKELPPPQKDIVSLVDASDNSSEHSV
VTMCASGDETDNTLVKYPRLRKQQPLTAKDSQSLKEQEEPEEPEQPEENQ
TEEHMPTSQPDLARVRYLEQQMTQMSELIMKSFQINGGAPNSQAFEQLAM
ATEMLQQRSDRRGDTESEMSSMTETTMTSARSLGGGIPPLTMRMERSQEA
LLTTRSSKLPRPKCRCPSESDLIEHEQKLDMGHELPHDLAANFGLGEGYL
VDECGQGDGLMRHPQQRKPMELNRRAVSGTPSTFNSDGCEYQINVSRSRC
SNDKINYKNLGRKSFSFTNPQVREIERQNQILLRKMMTVKPTATIKASTS
SIKINGPEKRQTPPAPRLSSAAVNRKKNQRQIDLDNDLLKRKLEAIGTRR
PQFK*

BS10011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
hmw-PA 604 CG7669-PA 1..604 1..604 3096 100 Plus
l(2)01289-PG 1191 CG9432-PG 740..920 114..311 169 25.7 Plus
l(2)01289-PM 1193 CG9432-PM 740..920 114..311 169 25.7 Plus
Sh3beta-PE 485 CG8582-PE 179..473 4..311 160 20.9 Plus