Clone Sequence Records
BS10011.3prime Sequence
894 bp (802 high quality bases) assembled on 2006-04-19
> BS10011.3prime
ATGGTCTAGGAAAGCTTTCACTTGAATTGCGGTCGCCGTGTGCCGATGGC
CTCCAGTTTCCGCTTGAGCAGATCGTTGTCCAGGTCGATCTGGCGCTGAT
TCTTCTTCCGGTTCACAGCTGCGCTGGACAGTCGTGGCGCTGGAGGTGTC
TGTCGCTTCTCGGGCCCATTGATCTTTATGCTACTGGTGCTAGCCTTGAT
CGTCGCCGTGGGCTTCACAGTCATCATCTTGCGCAAAAGAATCTGATTCT
GGCGCTCGATCTCGCGCACTTGGGGATTCGTAAAGCTAAAGCTTTTGCGC
CCAAGGTTTTTATAGTTAATCTTATCATTAGAGCAGCGGGAACGCGACAC
ATTGATTTGATACTCGCAACCGTCGCTGTTGAAGGTGCTTGGAGTTCCGC
TAACGGCTCGCCTGTTTAACTCCATTGGTTTGCGCTGTTGTGGATGCCTC
ATGAGTCCGTCGCCCTGGCCACATTCGTCTACGAGGTAGCCTTCGCCCAA
GCCGAAGTTCGCTGCCAGGTCATGGGGCAACTCGTGACCCATATCCAGTT
TCTGCTCGTGTTCAATTAAATCCGATTCCGAGGGACATCTGCATTTGGGT
CTGGGTAGCTTGGAAGATCGCGTCGTGAGTAGTGCCTCCTGAGAACGCTC
CATCCGCATTGTCAGGGGGGGAATTCCTCCACCCAAGCTCCTAGCACTGG
TCATAGTCGTTTCCGTCATCGATGACATCTCGGATTCAGTGTCCCCGCGC
CTGTCACTTCGTTGCTGCAACATCTCCGTGGCCATGGGCAGCTGCTCGAA
GGCTTGGCTATTTGGCGCTCCTCCATTGATCTGGAATGACTTCATGATCA
ATTCCGACATTTGGGTCATCTGCTGCTCCAGGTACCGAACCCTC
BS10011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7669-PA | 1815 | CG7669-RA | 939..1815 | 894..18 | 4335 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hmw-RA | 2041 | CG7669-RA | 1071..1947 | 894..18 | 4355 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18363191..18363769 | 894..316 | 2865 | 99.7 | Minus |
3R | 32079331 | 3R | 18363824..18363983 | 315..156 | 800 | 100 | Minus |
3R | 32079331 | 3R | 18364044..18364183 | 157..18 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:45:38 has no hits.
BS10011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:32 Download gff for
BS10011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7669-PA | 939..1815 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:39 Download gff for
BS10011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7669-PA | 939..1815 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:25:33 Download gff for
BS10011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7669-RA | 1071..1954 | 9..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:54 Download gff for
BS10011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hmw-RA | 1071..1954 | 9..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:54 Download gff for
BS10011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18364046..18364190 | 9..155 | 97 | | Minus |
3R | 18363191..18363769 | 316..894 | 99 | -> | Minus |
3R | 18363824..18363983 | 156..315 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:25:33 Download gff for
BS10011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14188913..14189491 | 316..894 | 99 | -> | Minus |
arm_3R | 14189546..14189705 | 156..315 | 100 | -> | Minus |
arm_3R | 14189768..14189912 | 9..155 | 97 | | Minus |
BS10011.5prime Sequence
847 bp (797 high quality bases) assembled on 2006-04-19
> BS10011.5prime
GAAGTTATCAGTCGACATGTCGGGGGCTGGAGAACACTCAGATGAAGAGT
CCTATGGAGAGGAGTCCTTCGAGGAGGACTCGGAGTCGGAGGTGGAGGTG
GAGGAAGAAGAGATTGAGTATATTGAGCCAGAGGAGTCAAAACCAAGTGA
CGCTCTTCTGTTGGGGGAGAGCGACACCCAAAGCGAGAGCGATGTGAAAG
AAGAGTTTCTTAGCGGCAACCCACACGCCCGTCGCTATTTGGGCGCCCGA
GTGGTGTCCTACCTGAGTTCCTCCTCTGACGACGAAAGCCAAGTGGTCAT
CACCAAGACGGTAGCCGAGGTAAATCAACTAAGTCTGCGAGTGGACACGC
CTCCGGAGGATGAGACGCCCTCGGTGCGCACTCTGATGCCAGGCAGTGCC
CATTCTCGGGTTAAGGATGAGGACGAGGCTGAAGACGAGGATGATGACGA
AGGTGATGGCGAAAATGATAACGATAATGAGGACGAGAATGATGACGAGG
ATGCTGAAGTCGAGGAAATCGAAGAAGAGGAGGAAGAAATTCCAGGAGAC
GAAGACGACGCCCAAAGCGATGGATCCATGGGTCGTCAATCCGCCGACGA
CAGCGACGAGGAGGAGGGCACGGATGTGGAAGTGGAGCAGCTGGAGGAGG
ACGAACCAATTGTAACAGCTGTGTGCAAAAAGACGGTCCAGAAGGAGTTA
CCACCGCCCCAGAAGGACATTGTTTCGCTGGTCGATGCCAGTGATAACAG
TAGTGAGCACAGTGTGGTCACCATGTGTGCATCAGGAGACGAAACAGACA
ACACCTTGGTGAAGTATCCTAGATTACGAAAGCAGCACCCACTTACT
BS10011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7669-PA | 1815 | CG7669-RA | 1..831 | 17..847 | 4130 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hmw-RA | 2041 | CG7669-RA | 133..963 | 17..847 | 4140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18362402..18363016 | 221..835 | 3075 | 100 | Plus |
3R | 32079331 | 3R | 18362126..18362329 | 17..220 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:52:13 has no hits.
BS10011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:33 Download gff for
BS10011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7669-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:41 Download gff for
BS10011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7669-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:15 Download gff for
BS10011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7669-RA | 129..963 | 9..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:17:19 Download gff for
BS10011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hmw-RA | 129..963 | 9..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:17:19 Download gff for
BS10011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18362122..18362329 | 9..220 | 98 | -> | Plus |
3R | 18362402..18363016 | 221..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:15 Download gff for
BS10011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14187844..14188051 | 9..220 | 98 | -> | Plus |
arm_3R | 14188124..14188738 | 221..835 | 100 | | Plus |
BS10011.complete Sequence
1848 bp assembled on 2008-08-14
GenBank Submission: FJ636526
> BS10011.complete
GAAGTTATCAGTCGACATGTCGGGGGCTGGAGAACACTCAGATGAAGAGT
CCTATGGAGAGGAGTCCTTCGAGGAGGACTCGGAGTCGGAGGTGGAGGTG
GAGGAAGAAGAGATTGAGTATATTGAGCCAGAGGAGTCAAAACCAAGTGA
CGCTCTTCTGTTGGGGGAGAGCGACACCCAAAGCGAGAGCGATGTGAAAG
AAGAGTTTCTTAGCGGCAACCCACACGCCCGTCGCTATTTGGGCGCCCGA
GTGGTGTCCTACCTGAGTTCCTCCTCTGACGACGAAAGCCAAGTGGTCAT
CACCAAGACGGTAGCCGAGGTAAATCAACTAAGTCTGCGAGTGGACACGC
CTCCGGAGGATGAGACGCCCTCGGTGCGCACTCTGATGCCAGGCAGTGCC
CATTCTCGGGTTAAGGATGAGGACGAGGCTGAAGACGAGGATGATGACGA
AGGTGATGGCGAAAATGATAACGATAATGAGGACGAGAATGATGACGAGG
ATGCTGAAGTCGAGGAAATCGAAGAAGAGGAGGAAGAAATTCCAGGAGAC
GAAGACGACGCCCAAAGCGATGGATCCATGGGTCGTCAATCCGCCGACGA
CAGCGACGAGGAGGAGGGCACGGATGTGGAAGTGGAGCAGCTGGAGGAGG
ACGAACCAATTGTAACAGCTGTGTGCAAAAAGACGGTCCAGAAGGAGTTA
CCACCGCCCCAGAAGGACATTGTTTCGCTGGTCGATGCCAGTGATAACAG
TAGTGAGCACAGTGTGGTCACCATGTGTGCATCAGGAGACGAAACAGACA
ACACCTTGGTGAAGTATCCTAGATTACGAAAGCAGCAACCACTTACTGCT
AAGGATTCGCAATCGCTAAAAGAGCAGGAAGAACCGGAAGAACCGGAACA
ACCCGAAGAAAATCAAACAGAAGAACACATGCCAACATCACAGCCCGATC
TGGCGAGGGTTCGGTACCTGGAGCAGCAGATGACCCAAATGTCGGAATTG
ATCATGAAGTCATTCCAGATCAATGGAGGAGCGCCAAATAGCCAAGCCTT
CGAGCAGCTTGCCATGGCCACGGAGATGTTGCAGCAACGAAGTGACAGGC
GCGGGGACACTGAATCCGAGATGTCATCGATGACGGAAACGACTATGACC
AGTGCTAGGAGCTTGGGTGGAGGAATTCCCCCCCTGACAATGCGGATGGA
GCGTTCTCAGGAGGCACTACTCACGACGCGATCTTCCAAGCTACCCAGAC
CCAAATGCAGATGTCCCTCGGAATCGGATTTAATTGAACACGAGCAGAAA
CTGGATATGGGTCACGAGTTGCCCCATGACCTGGCAGCGAACTTCGGCTT
GGGCGAAGGCTACCTCGTAGACGAATGTGGCCAGGGCGACGGACTCATGA
GGCATCCACAACAGCGCAAACCAATGGAGTTAAACAGGCGAGCCGTTAGC
GGAACTCCAAGCACCTTCAACAGCGACGGTTGCGAGTATCAAATCAATGT
GTCGCGTTCCCGCTGCTCTAATGATAAGATTAACTATAAAAACCTTGGGC
GCAAAAGCTTTAGCTTTACGAATCCCCAAGTGCGCGAGATCGAGCGCCAG
AATCAGATTCTTTTGCGCAAGATGATGACTGTGAAGCCCACGGCGACGAT
CAAGGCTAGCACCAGTAGCATAAAGATCAATGGGCCCGAGAAGCGACAGA
CACCTCCAGCGCCACGACTGTCCAGCGCAGCTGTGAACCGGAAGAAGAAT
CAGCGCCAGATCGACCTGGACAACGATCTGCTCAAGCGGAAACTGGAGGC
CATCGGCACACGGCGACCGCAATTCAAGTGAAAGCTTTCCTAGACCAT
BS10011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hmw-RA | 1815 | CG7669-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hmw-RA | 2041 | CG7669-RA | 133..1947 | 17..1831 | 9075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18363069..18363769 | 833..1533 | 3505 | 100 | Plus |
3R | 32079331 | 3R | 18362402..18363016 | 221..835 | 3075 | 100 | Plus |
3R | 32079331 | 3R | 18362126..18362329 | 17..220 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 18363824..18363983 | 1534..1693 | 800 | 100 | Plus |
3R | 32079331 | 3R | 18364044..18364183 | 1692..1831 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:06:53 has no hits.
BS10011.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:41 Download gff for
BS10011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7669-RA | 129..1954 | 9..1840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:45:24 Download gff for
BS10011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7669-RA | 133..1946 | 17..1830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:23 Download gff for
BS10011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7669-RA | 133..1946 | 17..1830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:49 Download gff for
BS10011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hmw-RA | 133..1946 | 17..1830 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:49 Download gff for
BS10011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18363824..18363983 | 1534..1693 | 100 | -> | Plus |
3R | 18364046..18364182 | 1694..1830 | 100 | | Plus |
3R | 18362126..18362329 | 17..220 | 100 | -> | Plus |
3R | 18362402..18363016 | 221..835 | 100 | -> | Plus |
3R | 18363072..18363769 | 836..1533 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:45:24 Download gff for
BS10011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14187848..14188051 | 17..220 | 100 | -> | Plus |
arm_3R | 14188124..14188738 | 221..835 | 100 | -> | Plus |
arm_3R | 14188794..14189491 | 836..1533 | 100 | -> | Plus |
arm_3R | 14189546..14189705 | 1534..1693 | 100 | -> | Plus |
arm_3R | 14189768..14189904 | 1694..1830 | 100 | | Plus |
BS10011.pep Sequence
Translation from 16 to 1830
> BS10011.pep
MSGAGEHSDEESYGEESFEEDSESEVEVEEEEIEYIEPEESKPSDALLLG
ESDTQSESDVKEEFLSGNPHARRYLGARVVSYLSSSSDDESQVVITKTVA
EVNQLSLRVDTPPEDETPSVRTLMPGSAHSRVKDEDEAEDEDDDEGDGEN
DNDNEDENDDEDAEVEEIEEEEEEIPGDEDDAQSDGSMGRQSADDSDEEE
GTDVEVEQLEEDEPIVTAVCKKTVQKELPPPQKDIVSLVDASDNSSEHSV
VTMCASGDETDNTLVKYPRLRKQQPLTAKDSQSLKEQEEPEEPEQPEENQ
TEEHMPTSQPDLARVRYLEQQMTQMSELIMKSFQINGGAPNSQAFEQLAM
ATEMLQQRSDRRGDTESEMSSMTETTMTSARSLGGGIPPLTMRMERSQEA
LLTTRSSKLPRPKCRCPSESDLIEHEQKLDMGHELPHDLAANFGLGEGYL
VDECGQGDGLMRHPQQRKPMELNRRAVSGTPSTFNSDGCEYQINVSRSRC
SNDKINYKNLGRKSFSFTNPQVREIERQNQILLRKMMTVKPTATIKASTS
SIKINGPEKRQTPPAPRLSSAAVNRKKNQRQIDLDNDLLKRKLEAIGTRR
PQFK*
BS10011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hmw-PA | 604 | CG7669-PA | 1..604 | 1..604 | 3096 | 100 | Plus |
l(2)01289-PG | 1191 | CG9432-PG | 740..920 | 114..311 | 169 | 25.7 | Plus |
l(2)01289-PM | 1193 | CG9432-PM | 740..920 | 114..311 | 169 | 25.7 | Plus |
Sh3beta-PE | 485 | CG8582-PE | 179..473 | 4..311 | 160 | 20.9 | Plus |