Clone Sequence Records
BS10013.3prime Sequence
968 bp (827 high quality bases) assembled on 2006-04-19
> BS10013.3prime
ATGGTCTAGAAAGCTTTCAACGTCCGCTCAACCAGCTCTGGATTTGACTG
GCACTCTTGCCCTTCGTCTCCTGCAAGGCGATGGCAACGTAGGCAGTGGC
CACCCCCATCCAGGCGCTGAAGAACCAGAACGGCACATCAGCACCGCCAG
CATTGAGCACGCCGAAGAGCCATGTGACCAGGGACACGCACACCCAGTTC
ATCATTACGCTCAGGGAGACGGCGATGCCCTTCACGTCCGGCATGAAGAG
CTCGCCCATCATCATCCAAGGAATGGGGCCATAGCCCACGGAGAAGCTCA
CGATGAACAGCACTATGCAGAGCAGGGGCAACCAGCCAATGGACTGGGAC
AGATCGGTGTGCCGATTGATTGTGTTGTAAGCACCCAGCATGGCCAGGCA
GACAGTCATGATGGTGCTGCTGAAGATCAGCAGGATCTTGCGGCCGGCCT
TCTCGATCAGCAGGGAGGAGGCCAGGGTCATGATCACCTGCACCACACCC
ACCACTATGGTGCAGACGTTGGGATTCAGCGTGCTGCTAGACTCGAAGAT
CTCGTTCATGAAGAAGATTACGGCATTGATGCCGGAGAACTGCTGGAAGA
CCATCAGCAGCACTGAGATCACCATACCGTTCCGCGAGGCGCGGTTGCTG
AACAAATCCTTCACGGAGGCATCCACTCCAGTCTGGTCCAGGTCGTTTTG
GATGGCCTGGATGGCGTTGCTGGTGTTGCAGTAATCTCCCCACAGCCATT
TTAGTGCGCGATTGGCCTCGGAGCGCTTACCGTTTTTAAGTAGATACACT
GGCGTCTCGGGCACGATAAACAGGCCGACGAGCAGCAGGATGGGTATGAT
TAGACAGAGCAGGCTCAGAGTTTCCATGACACCAAAGCTCCCACACGTAG
ATAAACGGATACCAATCGTAAGGAGCAACTGGACAATGTGCCTAGACTGC
CGCGAATGCTAGTCTCCG
BS10013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1208-PA | 1491 | CG1208-RA | 635..1491 | 873..17 | 4285 | 100 | Minus |
| CG1208-PA | 1491 | CG1208-RA | 536..571 | 968..933 | 180 | 100 | Minus |
| CG1208-PA | 1491 | CG1208-RA | 572..598 | 933..907 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1208-RC | 2286 | CG1208-RC | 832..1787 | 968..17 | 4680 | 99.6 | Minus |
| CG1208-RB | 2168 | CG1208-RB | 722..1677 | 968..17 | 4680 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5837519..5838283 | 781..17 | 3825 | 100 | Minus |
| 3R | 32079331 | 3R | 5837151..5837342 | 968..781 | 760 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:23:44 has no hits.
BS10013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:37 Download gff for
BS10013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-PA | 536..1491 | 17..968 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:45 Download gff for
BS10013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-PA | 536..1491 | 17..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:26:10 Download gff for
BS10013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-RB | 733..1688 | 17..968 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:09:03 Download gff for
BS10013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-RB | 722..1677 | 17..968 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:09:03 Download gff for
BS10013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5837151..5837341 | 782..968 | 97 | -> | Minus |
| 3R | 5837519..5838283 | 17..781 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:26:10 Download gff for
BS10013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1662873..1663063 | 782..968 | 97 | -> | Minus |
| arm_3R | 1663241..1664005 | 17..781 | 100 | | Minus |
BS10013.5prime Sequence
919 bp (909 high quality bases) assembled on 2006-04-19
> BS10013.5prime
GAAGTTATCAGTCGACATGGTGGCTACCGAGGAACTTAAAACGACCGTCA
GTCAAGAGGACGGAGACTCACGCAATCCAATAACCTATGATCTTCTACAA
GAAAATCAGTCGAAGACTTCAAAGACCCGGCAATATGTGGCGGCTATGAT
AATTTGTTTGGGTGCGGTTGCCGCTGGAACTGCGTTATCCTGGACGTCTC
CTGTTTTTCCGCAGATATCTGCCGGAAACGAAAGCAGTTTCAATTCCACA
ACTGGCGGTATTTCCAACTCGACTTCCAACGAGAATGACATTCGACTGAC
TGATTCGCAAAAAACATTGGTGGGTTCCATGTTGCCCTTCGGCGCCCTTT
TTGGAGCCCTCCCCTCTGGATATATTGCCGATAGGATCGGGCGACGTTAT
ACAGCTATGGTCATGGACATTCCCTTCATCTTGGCCTGGATCACGCTTAG
TTTCGCCAATTCCGTCGGCTGGCTTTACTTGGGCCGATTTTTAATTGGTA
TCGCAACGGGCAGCTTCTGCGTGGTGGCTCCTATGTACATTTCGGAAATC
GCGGAGACTAGCATTCGCGGCAGTCTAGGCACATTGTTCCAGTTGCTCCT
TACGATTGGTATCCTGTTTATCTACGTGGTGGGAGCTTTGGTGTCATGGA
AAACTCTGAGCCTGCTCTGTCTAATCATACCCATCCTGCTGCTCGTCGGC
CTGTTTATCGTGCCCGAGACGCCAGTGTATCTACTTAAAAACGGTAAGCG
CTCCGAGGCCAATCGCGCACTAAAATGGCTGTGGGGAGATTACTGCAACA
CCAGCAACGCCATCCAGGCCATCCAAAACGACCTGGACCAGACTGGAGTG
GATGCCTCCGTGAAGGATTTGTTCAGCAACCGCGCCTCGCGGAACGGTAT
GGTGATCTCAGTGCTGCTG
BS10013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1208-PA | 1491 | CG1208-RA | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1208-RB | 2168 | CG1208-RB | 185..1089 | 15..919 | 4525 | 100 | Plus |
| CG1208-RC | 2286 | CG1208-RC | 323..1199 | 43..919 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5837096..5837342 | 497..743 | 1235 | 100 | Plus |
| 3R | 32079331 | 3R | 5836857..5837045 | 312..500 | 945 | 100 | Plus |
| 3R | 32079331 | 3R | 5837519..5837695 | 743..919 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 5836011..5836169 | 153..311 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 5835838..5835947 | 43..152 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:45:51 has no hits.
BS10013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:38 Download gff for
BS10013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-PA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:47 Download gff for
BS10013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-PA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:16:36 Download gff for
BS10013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-RB | 196..1100 | 15..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:57 Download gff for
BS10013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-RB | 185..1089 | 15..919 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:57 Download gff for
BS10013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5831823..5831851 | 15..43 | 100 | -> | Plus |
| 3R | 5835839..5835947 | 44..152 | 100 | -> | Plus |
| 3R | 5836011..5836169 | 153..311 | 100 | -> | Plus |
| 3R | 5836857..5837042 | 312..497 | 100 | -> | Plus |
| 3R | 5837097..5837341 | 498..742 | 100 | -> | Plus |
| 3R | 5837519..5837695 | 743..919 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:16:36 Download gff for
BS10013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1657545..1657573 | 15..43 | 100 | -> | Plus |
| arm_3R | 1661561..1661669 | 44..152 | 100 | -> | Plus |
| arm_3R | 1661733..1661891 | 153..311 | 100 | -> | Plus |
| arm_3R | 1662579..1662764 | 312..497 | 100 | -> | Plus |
| arm_3R | 1662819..1663063 | 498..742 | 100 | -> | Plus |
| arm_3R | 1663241..1663417 | 743..919 | 100 | | Plus |
BS10013.complete Sequence
1523 bp (1523 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636527
> BS10013.complete
GAAGTTATCAGTCGACATGGTGGCTACCGAGGAACTTAAAACGACCGTCA
GTCAAGAGGACGGAGACTCACGCAATCCAATAACCTATGATCTTCTACAA
GAAAATCAGTCGAAGACTTCAAAGACCCGGCAATATGTGGCGGCTATGAT
AATTTGTTTGGGTGCGGTTGCCGCTGGAACTGCGTTATCCTGGACGTCTC
CTGTTTTTCCGCAGATATCTGCCGGAAACGAAAGCAGTTTCAATTCCACA
ACTGGCGGTATTTCCAACTCGACTTCCAACGAGAATGACATTCGACTGAC
TGATTCGCAAAAAACATTGGTGGGTTCCATGTTGCCCTTCGGCGCCCTTT
TTGGAGCCCTCCCCTCTGGATATATTGCCGATAGGATCGGGCGACGTTAT
ACAGCTATGGTCATGGACATTCCCTTCATCTTGGCCTGGATCACGCTTAG
TTTCGCCAATTCCGTCGGCTGGCTTTACTTGGGCCGATTTTTAATTGGTA
TCGCAACGGGCAGCTTCTGCGTGGTGGCTCCTATGTACATTTCGGAAATC
GCGGAGACTAGCATTCGCGGCAGTCTAGGCACATTGTTCCAGTTGCTCCT
TACGATTGGTATCCTGTTTATCTACGTGGTGGGAGCTTTGGTGTCATGGA
AAACTCTGAGCCTGCTCTGTCTAATCATACCCATCCTGCTGCTCGTCGGC
CTGTTTATCGTGCCCGAGACGCCAGTGTATCTACTTAAAAACGGTAAGCG
CTCCGAGGCCAATCGCGCACTAAAATGGCTGTGGGGAGATTACTGCAACA
CCAGCAACGCCATCCAGGCCATCCAAAACGACCTGGACCAGACTGGAGTG
GATGCCTCCGTGAAGGATTTGTTCAGCAACCGCGCCTCGCGGAACGGTAT
GGTGATCTCAGTGCTGCTGATGGTCTTCCAGCAGTTCTCCGGCATCAATG
CCGTAATCTTCTTCATGAACGAGATCTTCGAGTCTAGCAGCACGCTGAAT
CCCAACGTCTGCACCATAGTGGTGGGTGTGGTGCAGGTGATCATGACCCT
GGCCTCCTCCCTGCTGATCGAGAAGGCCGGCCGCAAGATCCTGCTGATCT
TCAGCAGCACCATCATGACTGTCTGCCTGGCCATGCTGGGTGCTTACAAC
ACAATCAATCGGCACACCGATCTGTCCCAGTCCATTGGCTGGTTGCCCCT
GCTCTGCATAGTGCTGTTCATCGTGAGCTTCTCCGTGGGCTATGGCCCCA
TTCCTTGGATGATGATGGGCGAGCTCTTCATGCCGGACGTGAAGGGCATC
GCCGTCTCCCTGAGCGTAATGATGAACTGGGTGTGCGTGTCCCTGGTCAC
ATGGCTCTTCGGCGTGCTCAATGCTGGCGGTGCTGATGTGCCGTTCTGGT
TCTTCAGCGCCTGGATGGGGGTGGCCACTGCCTACGTTGCCATCGCCTTG
CAGGAGACGAAGGGCAAGAGTGCCAGTCAAATCCAGAGCTGGTTGAGCGG
ACGTTGAAAGCTTTCTAGACCAT
BS10013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1208-RB | 1491 | CG1208-PB | 1..1491 | 17..1507 | 7455 | 100 | Plus |
| CG1208-RC | 1509 | CG1208-PC | 45..1509 | 43..1507 | 7325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1208-RB | 2168 | CG1208-RB | 185..1677 | 15..1507 | 7465 | 100 | Plus |
| CG1208-RC | 2286 | CG1208-RC | 323..1787 | 43..1507 | 7325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5837519..5838283 | 743..1507 | 3825 | 100 | Plus |
| 3R | 32079331 | 3R | 5837096..5837342 | 497..743 | 1235 | 100 | Plus |
| 3R | 32079331 | 3R | 5836857..5837045 | 312..500 | 945 | 100 | Plus |
| 3R | 32079331 | 3R | 5836011..5836169 | 153..311 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 5835838..5835947 | 43..152 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:45:39 has no hits.
BS10013.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:36 Download gff for
BS10013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-RB | 1..1491 | 17..1507 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:20 Download gff for
BS10013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-RB | 196..1688 | 15..1507 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:54 Download gff for
BS10013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-RB | 198..1687 | 17..1506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:37 Download gff for
BS10013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-RB | 196..1688 | 15..1507 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:40 Download gff for
BS10013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1208-RB | 187..1676 | 17..1506 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:40 Download gff for
BS10013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5831825..5831851 | 17..43 | 100 | -> | Plus |
| 3R | 5835839..5835947 | 44..152 | 100 | -> | Plus |
| 3R | 5836011..5836169 | 153..311 | 100 | -> | Plus |
| 3R | 5836857..5837042 | 312..497 | 100 | -> | Plus |
| 3R | 5837097..5837341 | 498..742 | 100 | -> | Plus |
| 3R | 5837519..5838282 | 743..1506 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:54 Download gff for
BS10013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1657547..1657573 | 17..43 | 100 | -> | Plus |
| arm_3R | 1661561..1661669 | 44..152 | 100 | -> | Plus |
| arm_3R | 1661733..1661891 | 153..311 | 100 | -> | Plus |
| arm_3R | 1662579..1662764 | 312..497 | 100 | -> | Plus |
| arm_3R | 1662819..1663063 | 498..742 | 100 | -> | Plus |
| arm_3R | 1663241..1664004 | 743..1506 | 100 | | Plus |
BS10013.pep Sequence
Translation from 16 to 1506
> BS10013.pep
MVATEELKTTVSQEDGDSRNPITYDLLQENQSKTSKTRQYVAAMIICLGA
VAAGTALSWTSPVFPQISAGNESSFNSTTGGISNSTSNENDIRLTDSQKT
LVGSMLPFGALFGALPSGYIADRIGRRYTAMVMDIPFILAWITLSFANSV
GWLYLGRFLIGIATGSFCVVAPMYISEIAETSIRGSLGTLFQLLLTIGIL
FIYVVGALVSWKTLSLLCLIIPILLLVGLFIVPETPVYLLKNGKRSEANR
ALKWLWGDYCNTSNAIQAIQNDLDQTGVDASVKDLFSNRASRNGMVISVL
LMVFQQFSGINAVIFFMNEIFESSSTLNPNVCTIVVGVVQVIMTLASSLL
IEKAGRKILLIFSSTIMTVCLAMLGAYNTINRHTDLSQSIGWLPLLCIVL
FIVSFSVGYGPIPWMMMGELFMPDVKGIAVSLSVMMNWVCVSLVTWLFGV
LNAGGADVPFWFFSAWMGVATAYVAIALQETKGKSASQIQSWLSGR*
BS10013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1208-PB | 496 | CG1208-PB | 1..496 | 1..496 | 2520 | 100 | Plus |
| CG1208-PC | 502 | CG1208-PC | 16..502 | 10..496 | 2478 | 100 | Plus |
| CG10960-PB | 539 | CG10960-PB | 61..527 | 17..495 | 854 | 38.8 | Plus |
| CG10960-PA | 471 | CG10960-PA | 8..459 | 32..495 | 853 | 39.7 | Plus |
| CG10960-PC | 471 | CG10960-PC | 8..459 | 32..495 | 853 | 39.7 | Plus |
