Clone Sequence Records
BS10017.3prime Sequence
951 bp (821 high quality bases) assembled on 2006-04-19
> BS10017.3prime
ATGGTCTAGAAAGCTTCTATTTGACGAAGAGGTCCTTGAGCGTGGCGCAG
AGCGAGGCGTCGCACGTGTCCTTGGAGTCGTCCTCGTCGGCCTTGCCGAA
CCAATTGAGCGTGGAGCGGACTGCCCGGCCGGCCTGCGATTGAGCAGAGC
TGCTGGCGGATGGTCGACTCCGCCGGGCGCCATGGGCGGGACTGCCGCTG
GCGCTGCCCGAATCCTTGCCCGCCTTGGGCGTGGCACCGCGAGACGCTGC
CGATGTGGAGGCACCGCCGCCGGACGACCCAGCTCCGGATCCGCCCATGC
TGGCGTTGGAGCTCTTTCGCAGGAAACCCTCGATGGCCGTGCCCAGAATG
GTGGCATCCACCGTCGCCTTGGTGGACTCCGCCCAGGTCTTCTGTTTGCT
CCTTGGCTTCAATTTCGGCTTGCCAGAGTCACCACCTAGCGGATCCTTCT
TCTGCAGCCGCTCCAGCACATCCTTGGACAGCGCCACCGCCGAACTCTTG
CTCCGCACGCTCTTCTTGCGCGCCAACGGCGTGTGCCGCTTGGCAAACCA
ACCGGACAGCGTGGCCGATCCATTGTCCTGGACATCGCTCACCAGCTGCT
TGGCGTTGTTCAGCAGGGACACATCGAAGCTATTGGATCGTGTCGACCTA
CCGGCATTGGGATCGAGTAGGCCGCCAGTGGTTCCAGATCCTCCACCGCC
TACGCCACCTCCACCGCCCACCGCCAGTGAACCGCTGTGGGTTGTTGGTG
TGGGCGTGGCGCTGGTAGCACGCCCACGAGCGGCCGCCTGAAAGGTCTGG
CTGAGAAACGGGCTACTGGCCGTGGCCGTTGCCGAAGAACTAGCACTTGA
GCTGCCATCCCGGCCTTCCGGGTCCGGCCGGTGCATATCCATGGCCGAGC
TGGTCAACGAGCTAAATATGCCCGCGATGTCCGTACGACTGCCCCATAGT
C
BS10017.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-PA | 1845 | CG6123-RA | 911..1845 | 951..17 | 4600 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-RB | 6236 | CG6123-RB | 1423..2357 | 951..17 | 4630 | 99.7 | Minus |
| CG6123-RA | 4949 | CG6123-RA | 1423..2357 | 951..17 | 4630 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18327256..18328190 | 17..951 | 4630 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:24:51 has no hits.
BS10017.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:43 Download gff for
BS10017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-PA | 911..1845 | 17..951 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:55 Download gff for
BS10017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-PA | 911..1845 | 17..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:46 Download gff for
BS10017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 1320..2254 | 17..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:13 Download gff for
BS10017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 1423..2357 | 17..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:13 Download gff for
BS10017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18327256..18328190 | 17..951 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:46 Download gff for
BS10017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18221289..18222223 | 17..951 | 99 | | Plus |
BS10017.5prime Sequence
901 bp (860 high quality bases) assembled on 2006-04-19
> BS10017.5prime
GAAGTTATCAGTCGACATGGATGCGCTACGCTTCCGTGGTTCACCATTCG
CCCGCTTTACGGGCCAGTCGACCGGACCGGGCCATCCCCGTCCGCCGCCA
CACCCACAACATCCGCAACGCCCACAGGCGGCGGGAACACACGGCATCAG
TGCCCCGGAGCCGCTGATCGTTGTGGAGGAGTCCAATCTGCCGGAGGAGC
AGGAGGACAGCTCTGAGCCGACGGTCTCGAATCGCGGCAGCCTGGACATC
GACTCGCCCGTGAATCCGTATCTACTCTCGCCATGGCGGGATCCACGCGA
GGCCAGAAAGCATTCGCTGCCCTCGCAGCAGGTGACCGACGGCATCACGG
CCAGCCAGGTGCGCCGGCTCTCGGAGCGAGGCGGCGAGGGATCGGGGCCC
ACACCGAAGGAGGCCGCCTTTTTGGCCACTTTGTCGCAGGCTCCGGCGCC
GACCGGACGTCGCCACTCGGTGGTGACCATCTCGAAGGTGCCCACCACAC
TATTTGGACGCTCGCGTCGCGAATCCGTGGCCGCGTATCCCAACAGCAAT
GGGAGCAGTCGGGTGCTGAATTCCCGCCGGGAGAGCAACACAGGTCCCCC
ATCGACAGACCCCATCGGCAGCATTCACAATCTGCAGCTGGACATCATGG
ACGACATCTACTTGCAGTCGCGCAAGGCCCGCTTGAAGCTTTGGACATCC
TCCAACGAGAAGGTGTGCGAGGTGCAGACCGTCGACGAGGCCGGCTCCGG
CCAGCCGGGCCGACGATTCACCAACCGTCGCTACTCGGAATGCCCCCAGC
CAGGATTGGCCAGCTCCTTTCGCCGCGCCTCCGAGCTGCCGCCGTCGCAG
CAGCAGCAGCAGCAGGCTCAGTCGCAGAGCTCGACTCGGGCCTCAACGCG
T
BS10017.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-PA | 1845 | CG6123-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-RB | 6236 | CG6123-RB | 513..1397 | 17..901 | 4425 | 100 | Plus |
| CG6123-RA | 4949 | CG6123-RA | 513..1397 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18328949..18329482 | 553..20 | 2670 | 100 | Minus |
| X | 23542271 | X | 18328216..18328565 | 901..552 | 1750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:07:23 has no hits.
BS10017.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:44 Download gff for
BS10017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:42:57 Download gff for
BS10017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:48:30 Download gff for
BS10017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 410..1294 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:50 Download gff for
BS10017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 513..1397 | 17..901 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:50 Download gff for
BS10017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18328216..18328564 | 553..901 | 100 | <- | Minus |
| X | 18328950..18329488 | 12..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:48:30 Download gff for
BS10017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18222249..18222597 | 553..901 | 100 | <- | Minus |
| arm_X | 18222983..18223521 | 12..552 | 99 | | Minus |
BS10017.complete Sequence
1877 bp assembled on 2007-11-30
GenBank Submission: FJ636528
> BS10017.complete
GAAGTTATCAGTCGACATGGATGCGCTACGCTTCCGTGGTTCACCATTCG
CCCGCTTTACGGGCCAGTCGACCGGACCGGGCCATCCCCGTCCGCCGCCA
CACCCACAACATCCGCAACGCCCACAGGCGGCGGGAACACACGGCATCAG
TGCCCCGGAGCCGCTGATCGTTGTGGAGGAGTCCAATCTGCCGGAGGAGC
AGGAGGACAGCTCTGAGCCGACGGTCTCGAATCGCGGCAGCCTGGACATC
GACTCGCCCGTGAATCCGTATCTACTCTCGCCATGGCGGGATCCACGCGA
GGCCAGAAAGCATTCGCTGCCCTCGCAGCAGGTGACCGACGGCATCACGG
CCAGCCAGGTGCGCCGGCTCTCGGAGCGAGGCGGCGAGGGATCGGGGCCC
ACACCGAAGGAGGCCGCCTTTTTGGCCACTTTGTCGCAGGCTCCGGCGCC
GACCGGACGTCGCCACTCGGTGGTGACCATCTCGAAGGTGCCCACCACAC
TATTTGGACGCTCGCGTCGCGAATCCGTGGCCGCGTATCCCAACAGCAAT
GGGAGCAGTCGGGTGCTGAATTCCCGCCGGGAGAGCAACACAGGTCCCCC
ATCGACAGACCCCATCGGCAGCATTCACAATCTGCAGCTGGACATCATGG
ACGACATCTACTTGCAGTCGCGCAAGGCCCGCTTGAAGCTTTGGACATCC
TCCAACGAGAAGGTGTGCGAGGTGCAGACCGTCGACGAGGCCGGCTCCGG
CCAGCCGGGCCGACGATTCACCAACCGTCGCTACTCGGAATGCCCCCAGC
CAGGATTGGCCAGCTCCTTTCGCCGCGCCTCCGAGCTGCCGCCGTCGCAG
CAGCAGCAGCAGCAGGCTCAGTCGCAGAGCTCGACTCGGGCCTCAACGCG
TCGCAAGAAATCGGGCAGTGGAACTGGACTATTGGGCAGTCGTACGGACA
TCGCCGGCATATTTAGCTCGTTGACCAGCTCGGCCATGGATATGCACCGG
CCGGAACCGGAAGGCCGGGATGGCAGCTCAAGTGCTAGTTCTTCGGCAAC
GGCCACGGCCAGTAGCCCGTTTCTCAGCCAGACCTTTCAGGCGGCCGCTC
GTGGGCGTGCTACCAGCGCCACGCCCACACCAACAACCCACAGCGGTTCA
CTGGCGGTGGGCGGTGGAGGTGGCGTAGGCGGTGGAGGATCTGGAACCAC
TGGCGGCCTACTCGATCCCAATGCCGGTAGGTCGACACGATCCAATAGCT
TCGATGTGTCCCTGCTGAACAACGCCAAGCAGCTGGTGAGCGATGTCCAG
GACAATGGATCGGCCACGCTGTCCGGTTGGTTTGCCAAGCGGCACACGCC
GTTGGCGCGCAAGAAGAGCGTGCGGAGCAAGAGTTCGGCGGTGGCGCTGT
CCAAGGATGTGCTGGAGCGGCTGCAGAAGAAGGATCCGCTAGGTGGTGAC
TCTGGCAAGCCGAAATTGAAGCCAAGGAGCAAACAGAAGACCTGGGCGGA
GTCCACCAAGGCGACGGTGGATGCCACCATTCTGGGCACGGCCATCGAGG
GTTTCCTGCGAAAGAGCTCCAACGCCAGCATGGGCGGATCCGGAGCTGGG
TCGTCCGGCGGCGGTGCCTCCACATCGGCAGCGTCTCGCGGTGCCACGCC
CAAGGCGGGCAAGGATTCGGGCAGCGCCAGCGGCAGTCCCGCCCATGGCG
CCCGGCGGAGTCGACCATCCGCCAGCAGCTCTGCTCAATCGCAGGCCGGC
CGGGCAGTCCGCTCCACGCTCAATTGGTTCGGCAAGGCCGACGAGGACGA
CTCCAAGGACACGTGCGACGCCTCGCTCTGCGCCACGCTCAAGGACCTCT
TCGTCAAATAGAAGCTTTCTAGACCAT
BS10017.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-RB | 1845 | CG6123-PB | 1..1845 | 17..1861 | 9225 | 100 | Plus |
| CG6123-RA | 1845 | CG6123-PA | 1..1845 | 17..1861 | 9225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-RB | 6236 | CG6123-RB | 513..2357 | 17..1861 | 9225 | 100 | Plus |
| CG6123-RA | 4949 | CG6123-RA | 513..2357 | 17..1861 | 9225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18327256..18328565 | 1861..552 | 6550 | 100 | Minus |
| X | 23542271 | X | 18328949..18329482 | 553..20 | 2670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:04:13 has no hits.
BS10017.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:44 Download gff for
BS10017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 1..1845 | 17..1861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:54 Download gff for
BS10017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 410..2254 | 17..1861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:07 Download gff for
BS10017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 410..2248 | 17..1855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:15 Download gff for
BS10017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 410..2248 | 17..1855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:45 Download gff for
BS10017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6123-RA | 513..2351 | 17..1855 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:45 Download gff for
BS10017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18327262..18328564 | 553..1855 | 100 | <- | Minus |
| X | 18328950..18329483 | 17..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:07 Download gff for
BS10017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18221295..18222597 | 553..1855 | 100 | <- | Minus |
| arm_X | 18222983..18223516 | 17..552 | 99 | | Minus |
BS10017.pep Sequence
Translation from 16 to 1860
> BS10017.pep
MDALRFRGSPFARFTGQSTGPGHPRPPPHPQHPQRPQAAGTHGISAPEPL
IVVEESNLPEEQEDSSEPTVSNRGSLDIDSPVNPYLLSPWRDPREARKHS
LPSQQVTDGITASQVRRLSERGGEGSGPTPKEAAFLATLSQAPAPTGRRH
SVVTISKVPTTLFGRSRRESVAAYPNSNGSSRVLNSRRESNTGPPSTDPI
GSIHNLQLDIMDDIYLQSRKARLKLWTSSNEKVCEVQTVDEAGSGQPGRR
FTNRRYSECPQPGLASSFRRASELPPSQQQQQQAQSQSSTRASTRRKKSG
SGTGLLGSRTDIAGIFSSLTSSAMDMHRPEPEGRDGSSSASSSATATASS
PFLSQTFQAAARGRATSATPTPTTHSGSLAVGGGGGVGGGGSGTTGGLLD
PNAGRSTRSNSFDVSLLNNAKQLVSDVQDNGSATLSGWFAKRHTPLARKK
SVRSKSSAVALSKDVLERLQKKDPLGGDSGKPKLKPRSKQKTWAESTKAT
VDATILGTAIEGFLRKSSNASMGGSGAGSSGGGASTSAASRGATPKAGKD
SGSASGSPAHGARRSRPSASSSAQSQAGRAVRSTLNWFGKADEDDSKDTC
DASLCATLKDLFVK*
BS10017.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6123-PB | 614 | CG6123-PB | 1..614 | 1..614 | 3135 | 100 | Plus |
| CG6123-PA | 614 | CG6123-PA | 1..614 | 1..614 | 3135 | 100 | Plus |
| CG32700-PB | 218 | CG32700-PB | 12..215 | 44..247 | 458 | 53.7 | Plus |
| CG32700-PA | 218 | CG32700-PA | 12..215 | 44..247 | 458 | 53.7 | Plus |
