Clone BS10020 Report

Search the DGRC for BS10020

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCtBP-RA
Protein status:BS10020.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10020.3prime Sequence

943 bp (860 high quality bases) assembled on 2006-04-19

> BS10020.3prime
ATGGTCTAGAAAGCTTCTACTTTTCTTGATTTGATATCATTTGTAGTTTA
CCTTCGGGATAAACAGCCGCCGCCACGCCCCCGGCGGCAGCGGCAGGCGG
CGTGCGCATGAAGTACTCCTTGTTGACGCAATTCCTCAGCACGTCTGGAA
TATTGCCGACGATCGCCCGCCGGATCTCGGTGGCTGCCATTTCGCGCAGC
TCCGTTGCGGACGCGTCGCTGAAGAAGGCGGCGTGCGGTGTGCAAATCAG
ATTTGGGGCATCCTTCAGTGCGCCTTGAAATACATTGTAAGGTTCGTTTT
CGTGAACGTCCAGGGCGGCAGCTCTTATCCTTCCCTGCTTCAGCGCCAAC
GCCAGGGTCTCGTCATCGACCAGACCGCCGCGTGCGGTGTTCACCAGAAA
TGCACCAGGTCGCATCTGTTTAATTGTGAATTCATTGATTAAATGATGGT
TGTGCTCGTTGAGCGTGCAATGCAGTGAGACGCAATCGGACTGGAAAAGC
AGGTCCTGCAGCGTGTAGACGCGAGTTAGGCCCAGCGACTTGTCGATGCC
ATCGGGCAGGTAGGGATCGTAGAAGATGACGTTGAAGCCGAACGCCTTAG
CCCGCAGGGCCACGGCGCTACCAATGCGGCCCAGTCCCACCAGACCCAAG
GTGTCGCCGCGGATGCGTGCACAGCCATGCGCAGCCTCCCGCACTTGCTC
GGGTCCGGTGAACTTCTTGCCCTCGCGCACCATGTTCGCTAGCCAGTATG
TCCGCCGGTAGAGGTTGAGGATGAGGCACATCGTCGTGTCCGCCACCTCC
TCGACTCCGTAGCCGGGAACGTTGCACACGGCGATGCCCAGTTCGCCCGC
CGCCTTTACATCAATGTTGTCTGTGCCGCTGCCGATGCGCACGATAATGC
GTAAAGCTTTGAACTTCTCAAGATCCTCCTTTGTCAAGATGAT

BS10020.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7583-PC 1161 CtBP-RC 235..1161 943..17 4635 100 Minus
CG7583-PD 1161 CtBP-RD 235..1161 943..17 4635 100 Minus
CG7583-PB 1161 CtBP-RB 235..1161 943..17 4635 100 Minus
CG7583-PA 1161 CtBP-RA 235..1161 943..17 4635 100 Minus
CG7583-PE 1431 CtBP-RE 235..1127 943..51 4465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-RA 3959 CG7583-RA 613..1540 943..16 4640 100 Minus
CtBP-RB 1719 CG7583-RB 753..1680 943..16 4640 100 Minus
CtBP-RD 3946 CG7583-RD 600..1527 943..16 4640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13019935..13020202 943..676 1340 100 Minus
3R 32079331 3R 13020849..13021114 681..416 1315 99.6 Minus
3R 32079331 3R 13021420..13021678 274..16 1295 100 Minus
3R 32079331 3R 13021172..13021317 419..274 730 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:29:21 has no hits.

BS10020.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:49 Download gff for BS10020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7583-PA 235..1161 17..943 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:04 Download gff for BS10020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7583-PA 235..1161 17..943 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:36:54 Download gff for BS10020.3prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RD 600..1527 16..943 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:49:58 Download gff for BS10020.3prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RD 600..1527 16..943 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:49:58 Download gff for BS10020.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13019935..13020201 677..943 100 -> Minus
3R 13020854..13021114 416..676 100 -> Minus
3R 13021176..13021316 275..415 100 -> Minus
3R 13021420..13021678 16..274 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:36:54 Download gff for BS10020.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8845657..8845923 677..943 100 -> Minus
arm_3R 8846576..8846836 416..676 100 -> Minus
arm_3R 8846898..8847038 275..415 100 -> Minus
arm_3R 8847142..8847400 16..274 100   Minus

BS10020.5prime Sequence

943 bp (830 high quality bases) assembled on 2006-04-19

> BS10020.5prime
GAAGTTATCAGTCGACATGGACAAAAATCTGATGATGCCGAAGCGTTCGC
GCATCGATGTCAAGGGCAACTTTGCCAACGGACCGCTGCAAGCACGCCCA
CTGGTGGCCCTACTCGATGGACGCGACTGCTCCATCGAGATGCCCATCCT
AAAGGATGTGGCCACGGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAA
TACACGAGAAGGTCCTCAACGAGGCAGTGGGAGCTCTGATGTGGCACACC
ATCATCTTGACAAAGGAGGATCTTGAGAAGTTCAAAGCTTTACGCATTAT
CGTGCGCATCGGCAGCGGCACAGACAACATTGATGTAAAGGCGGCGGGCG
AACTGGGCATCGCCGTGTGCAACGTTCCCGGCTACGGAGTCGAGGAGGTG
GCGGACACGACGATGTGCCTCATCCTCAACCTCTACCGGCGGACATACTG
GCTAGCGAACATGGTGCGCGAGGGCAAGAAGTTCACCGGACCCGAGCAAG
TGCGGGAGGCTGCGCATGGCTGTGCACGCATCCGCGGCGACACCTTGGGT
CTGGTGGGACTGGGCCGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGC
GTTCGGCTTCAACGTCATCTTCTACGATCCCTACCTGCCCGATGGCATCG
ACAAGTCGCTGGGCCTAACTCGCGTCTACACGCTGCAGGACCTGCTTTTC
CAGTCCGATTGCGTCTCACTGCATTGCACGCTCAACGAGCACAACCATCA
TTTAATCAATGAATTCACAATTAAACAGATGCGACCTGGTGCATTTCTGG
TGAACACCGCACGCGGCGGTCTGGTCGATGACGAGACCCTGGCGTTGGCG
CTGAAGCAGGGAAGGATAAGAGCTGCCGCCCTGGACGTTCACGAAAACGA
ACCTAACATGTATTTCANGGCGCACTTGAAGATGCCCCCAATC

BS10020.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7583-PC 1161 CtBP-RC 1..888 17..904 4440 100 Plus
CG7583-PD 1161 CtBP-RD 1..888 17..904 4440 100 Plus
CG7583-PE 1431 CtBP-RE 1..888 17..904 4440 100 Plus
CG7583-PB 1161 CtBP-RB 1..888 17..904 4440 100 Plus
CG7583-PA 1161 CtBP-RA 1..888 17..904 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-RA 3959 CG7583-RA 375..1306 13..943 4534 99.2 Plus
CtBP-RB 1719 CG7583-RB 515..1446 13..943 4534 99.2 Plus
CtBP-RE 2612 CG7583-RE 375..1306 13..943 4534 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13019894..13020202 210..518 1545 100 Plus
3R 32079331 3R 13020849..13021114 513..778 1315 99.6 Plus
3R 32079331 3R 13019616..13019816 13..213 990 99.5 Plus
3R 32079331 3R 13021172..13021305 775..908 655 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 11:02:20 has no hits.

BS10020.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:50 Download gff for BS10020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7583-PA 1..928 17..943 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:06 Download gff for BS10020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7583-PA 1..928 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:55 Download gff for BS10020.5prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RE 372..1306 9..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:12 Download gff for BS10020.5prime
Subject Subject Range Query Range Percent Splice Strand
CtBP-RE 372..1306 9..943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:12 Download gff for BS10020.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13020854..13021114 518..778 100 -> Plus
3R 13021176..13021315 779..917 98   Plus
3R 13019616..13019814 11..211 98 -> Plus
3R 13019896..13020201 212..517 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:55 Download gff for BS10020.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8845338..8845536 11..211 98 -> Plus
arm_3R 8845618..8845923 212..517 100 -> Plus
arm_3R 8846576..8846836 518..778 100 -> Plus
arm_3R 8846898..8847037 779..917 98   Plus

BS10020.complete Sequence

1193 bp (1193 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636529

> BS10020.complete
GAAGTTATCAGTCGACATGGACAAAAATCTGATGATGCCGAAGCGTTCGC
GCATCGATGTCAAGGGCAACTTTGCCAACGGACCGCTGCAAGCACGCCCA
CTGGTGGCCCTACTCGATGGACGCGACTGCTCCATCGAGATGCCCATCCT
AAAGGATGTGGCCACGGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAA
TACACGAGAAGGTCCTCAACGAGGCAGTGGGAGCTCTGATGTGGCACACC
ATCATCTTGACAAAGGAGGATCTTGAGAAGTTCAAAGCTTTACGCATTAT
CGTGCGCATCGGCAGCGGCACAGACAACATTGATGTAAAGGCGGCGGGCG
AACTGGGCATCGCCGTGTGCAACGTTCCCGGCTACGGAGTCGAGGAGGTG
GCGGACACGACGATGTGCCTCATCCTCAACCTCTACCGGCGGACATACTG
GCTAGCGAACATGGTGCGCGAGGGCAAGAAGTTCACCGGACCCGAGCAAG
TGCGGGAGGCTGCGCATGGCTGTGCACGCATCCGCGGCGACACCTTGGGT
CTGGTGGGACTGGGCCGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGC
GTTCGGCTTCAACGTCATCTTCTACGATCCCTACCTGCCCGATGGCATCG
ACAAGTCGCTGGGCCTAACTCGCGTCTACACGCTGCAGGACCTGCTTTTC
CAGTCCGATTGCGTCTCACTGCATTGCACGCTCAACGAGCACAACCATCA
TTTAATCAATGAATTCACAATTAAACAGATGCGACCTGGTGCATTTCTGG
TGAACACCGCACGCGGCGGTCTGGTCGATGACGAGACCCTGGCGTTGGCG
CTGAAGCAGGGAAGGATAAGAGCTGCCGCCCTGGACGTTCACGAAAACGA
ACCTTACAATGTATTTCAAGGCGCACTGAAGGATGCCCCAAATCTGATTT
GCACACCGCACGCCGCCTTCTTCAGCGACGCGTCCGCAACGGAGCTGCGC
GAAATGGCAGCCACCGAGATCCGGCGGGCGATCGTCGGCAATATTCCAGA
CGTGCTGAGGAATTGCGTCAACAAGGAGTACTTCATGCGCACGCCGCCTG
CCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTA
CAAATGATATCAAATCAAGAAAAGTAGAAGCTTTCTAGACCAT

BS10020.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-RA 1161 CG7583-PA 1..1161 17..1177 5805 100 Plus
CtBP-RB 1161 CG7583-PB 1..1161 17..1177 5805 100 Plus
CtBP-RD 1161 CG7583-PD 1..1161 17..1177 5805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-RA 3959 CG7583-RA 375..1540 13..1178 5815 99.9 Plus
CtBP-RB 1719 CG7583-RB 515..1680 13..1178 5815 99.9 Plus
CtBP-RD 3946 CG7583-RD 362..1527 13..1178 5815 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13019894..13020202 210..518 1545 100 Plus
3R 32079331 3R 13020849..13021114 513..778 1315 99.6 Plus
3R 32079331 3R 13021420..13021678 920..1178 1295 100 Plus
3R 32079331 3R 13019616..13019816 13..213 990 99.5 Plus
3R 32079331 3R 13021172..13021317 775..920 730 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:22:51 has no hits.

BS10020.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:39 Download gff for BS10020.complete
Subject Subject Range Query Range Percent Splice Strand
CtBP-RB 1..1161 17..1177 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:24 Download gff for BS10020.complete
Subject Subject Range Query Range Percent Splice Strand
CtBP-RB 512..1680 9..1178 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:36:23 Download gff for BS10020.complete
Subject Subject Range Query Range Percent Splice Strand
CtBP-RD 366..1526 17..1177 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:39 Download gff for BS10020.complete
Subject Subject Range Query Range Percent Splice Strand
CtBP-RB 512..1680 9..1178 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:08 Download gff for BS10020.complete
Subject Subject Range Query Range Percent Splice Strand
CtBP-RD 366..1526 17..1177 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:08 Download gff for BS10020.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13020854..13021114 518..778 100 -> Plus
3R 13021176..13021316 779..919 100 -> Plus
3R 13021420..13021677 920..1177 100   Plus
3R 13019620..13019814 17..211 100 -> Plus
3R 13019896..13020201 212..517 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:36:23 Download gff for BS10020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8845342..8845536 17..211 100 -> Plus
arm_3R 8845618..8845923 212..517 100 -> Plus
arm_3R 8846576..8846836 518..778 100 -> Plus
arm_3R 8846898..8847038 779..919 100 -> Plus
arm_3R 8847142..8847399 920..1177 100   Plus

BS10020.pep Sequence

Translation from 16 to 1176

> BS10020.pep
MDKNLMMPKRSRIDVKGNFANGPLQARPLVALLDGRDCSIEMPILKDVAT
VAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKALRIIVRIGS
GTDNIDVKAAGELGIAVCNVPGYGVEEVADTTMCLILNLYRRTYWLANMV
REGKKFTGPEQVREAAHGCARIRGDTLGLVGLGRIGSAVALRAKAFGFNV
IFYDPYLPDGIDKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF
TIKQMRPGAFLVNTARGGLVDDETLALALKQGRIRAAALDVHENEPYNVF
QGALKDAPNLICTPHAAFFSDASATELREMAATEIRRAIVGNIPDVLRNC
VNKEYFMRTPPAAAAGGVAAAVYPEGKLQMISNQEK*

BS10020.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CtBP-PA 386 CG7583-PA 1..386 1..386 1993 100 Plus
CtBP-PB 386 CG7583-PB 1..386 1..386 1993 100 Plus
CtBP-PD 386 CG7583-PD 1..386 1..386 1993 100 Plus
CtBP-PC 386 CG7583-PC 1..386 1..386 1993 100 Plus
CtBP-PF 383 CG7583-PF 1..383 1..386 1964 99.2 Plus