Clone Sequence Records
BS10020.3prime Sequence
943 bp (860 high quality bases) assembled on 2006-04-19
> BS10020.3prime
ATGGTCTAGAAAGCTTCTACTTTTCTTGATTTGATATCATTTGTAGTTTA
CCTTCGGGATAAACAGCCGCCGCCACGCCCCCGGCGGCAGCGGCAGGCGG
CGTGCGCATGAAGTACTCCTTGTTGACGCAATTCCTCAGCACGTCTGGAA
TATTGCCGACGATCGCCCGCCGGATCTCGGTGGCTGCCATTTCGCGCAGC
TCCGTTGCGGACGCGTCGCTGAAGAAGGCGGCGTGCGGTGTGCAAATCAG
ATTTGGGGCATCCTTCAGTGCGCCTTGAAATACATTGTAAGGTTCGTTTT
CGTGAACGTCCAGGGCGGCAGCTCTTATCCTTCCCTGCTTCAGCGCCAAC
GCCAGGGTCTCGTCATCGACCAGACCGCCGCGTGCGGTGTTCACCAGAAA
TGCACCAGGTCGCATCTGTTTAATTGTGAATTCATTGATTAAATGATGGT
TGTGCTCGTTGAGCGTGCAATGCAGTGAGACGCAATCGGACTGGAAAAGC
AGGTCCTGCAGCGTGTAGACGCGAGTTAGGCCCAGCGACTTGTCGATGCC
ATCGGGCAGGTAGGGATCGTAGAAGATGACGTTGAAGCCGAACGCCTTAG
CCCGCAGGGCCACGGCGCTACCAATGCGGCCCAGTCCCACCAGACCCAAG
GTGTCGCCGCGGATGCGTGCACAGCCATGCGCAGCCTCCCGCACTTGCTC
GGGTCCGGTGAACTTCTTGCCCTCGCGCACCATGTTCGCTAGCCAGTATG
TCCGCCGGTAGAGGTTGAGGATGAGGCACATCGTCGTGTCCGCCACCTCC
TCGACTCCGTAGCCGGGAACGTTGCACACGGCGATGCCCAGTTCGCCCGC
CGCCTTTACATCAATGTTGTCTGTGCCGCTGCCGATGCGCACGATAATGC
GTAAAGCTTTGAACTTCTCAAGATCCTCCTTTGTCAAGATGAT
BS10020.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7583-PC | 1161 | CtBP-RC | 235..1161 | 943..17 | 4635 | 100 | Minus |
CG7583-PD | 1161 | CtBP-RD | 235..1161 | 943..17 | 4635 | 100 | Minus |
CG7583-PB | 1161 | CtBP-RB | 235..1161 | 943..17 | 4635 | 100 | Minus |
CG7583-PA | 1161 | CtBP-RA | 235..1161 | 943..17 | 4635 | 100 | Minus |
CG7583-PE | 1431 | CtBP-RE | 235..1127 | 943..51 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:29:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtBP-RA | 3959 | CG7583-RA | 613..1540 | 943..16 | 4640 | 100 | Minus |
CtBP-RB | 1719 | CG7583-RB | 753..1680 | 943..16 | 4640 | 100 | Minus |
CtBP-RD | 3946 | CG7583-RD | 600..1527 | 943..16 | 4640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13019935..13020202 | 943..676 | 1340 | 100 | Minus |
3R | 32079331 | 3R | 13020849..13021114 | 681..416 | 1315 | 99.6 | Minus |
3R | 32079331 | 3R | 13021420..13021678 | 274..16 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 13021172..13021317 | 419..274 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:29:21 has no hits.
BS10020.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:49 Download gff for
BS10020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7583-PA | 235..1161 | 17..943 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:04 Download gff for
BS10020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7583-PA | 235..1161 | 17..943 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:36:54 Download gff for
BS10020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RD | 600..1527 | 16..943 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:49:58 Download gff for
BS10020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RD | 600..1527 | 16..943 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:49:58 Download gff for
BS10020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13019935..13020201 | 677..943 | 100 | -> | Minus |
3R | 13020854..13021114 | 416..676 | 100 | -> | Minus |
3R | 13021176..13021316 | 275..415 | 100 | -> | Minus |
3R | 13021420..13021678 | 16..274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:36:54 Download gff for
BS10020.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8845657..8845923 | 677..943 | 100 | -> | Minus |
arm_3R | 8846576..8846836 | 416..676 | 100 | -> | Minus |
arm_3R | 8846898..8847038 | 275..415 | 100 | -> | Minus |
arm_3R | 8847142..8847400 | 16..274 | 100 | | Minus |
BS10020.5prime Sequence
943 bp (830 high quality bases) assembled on 2006-04-19
> BS10020.5prime
GAAGTTATCAGTCGACATGGACAAAAATCTGATGATGCCGAAGCGTTCGC
GCATCGATGTCAAGGGCAACTTTGCCAACGGACCGCTGCAAGCACGCCCA
CTGGTGGCCCTACTCGATGGACGCGACTGCTCCATCGAGATGCCCATCCT
AAAGGATGTGGCCACGGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAA
TACACGAGAAGGTCCTCAACGAGGCAGTGGGAGCTCTGATGTGGCACACC
ATCATCTTGACAAAGGAGGATCTTGAGAAGTTCAAAGCTTTACGCATTAT
CGTGCGCATCGGCAGCGGCACAGACAACATTGATGTAAAGGCGGCGGGCG
AACTGGGCATCGCCGTGTGCAACGTTCCCGGCTACGGAGTCGAGGAGGTG
GCGGACACGACGATGTGCCTCATCCTCAACCTCTACCGGCGGACATACTG
GCTAGCGAACATGGTGCGCGAGGGCAAGAAGTTCACCGGACCCGAGCAAG
TGCGGGAGGCTGCGCATGGCTGTGCACGCATCCGCGGCGACACCTTGGGT
CTGGTGGGACTGGGCCGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGC
GTTCGGCTTCAACGTCATCTTCTACGATCCCTACCTGCCCGATGGCATCG
ACAAGTCGCTGGGCCTAACTCGCGTCTACACGCTGCAGGACCTGCTTTTC
CAGTCCGATTGCGTCTCACTGCATTGCACGCTCAACGAGCACAACCATCA
TTTAATCAATGAATTCACAATTAAACAGATGCGACCTGGTGCATTTCTGG
TGAACACCGCACGCGGCGGTCTGGTCGATGACGAGACCCTGGCGTTGGCG
CTGAAGCAGGGAAGGATAAGAGCTGCCGCCCTGGACGTTCACGAAAACGA
ACCTAACATGTATTTCANGGCGCACTTGAAGATGCCCCCAATC
BS10020.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7583-PC | 1161 | CtBP-RC | 1..888 | 17..904 | 4440 | 100 | Plus |
CG7583-PD | 1161 | CtBP-RD | 1..888 | 17..904 | 4440 | 100 | Plus |
CG7583-PE | 1431 | CtBP-RE | 1..888 | 17..904 | 4440 | 100 | Plus |
CG7583-PB | 1161 | CtBP-RB | 1..888 | 17..904 | 4440 | 100 | Plus |
CG7583-PA | 1161 | CtBP-RA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtBP-RA | 3959 | CG7583-RA | 375..1306 | 13..943 | 4534 | 99.2 | Plus |
CtBP-RB | 1719 | CG7583-RB | 515..1446 | 13..943 | 4534 | 99.2 | Plus |
CtBP-RE | 2612 | CG7583-RE | 375..1306 | 13..943 | 4534 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13019894..13020202 | 210..518 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 13020849..13021114 | 513..778 | 1315 | 99.6 | Plus |
3R | 32079331 | 3R | 13019616..13019816 | 13..213 | 990 | 99.5 | Plus |
3R | 32079331 | 3R | 13021172..13021305 | 775..908 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:02:20 has no hits.
BS10020.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:50 Download gff for
BS10020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7583-PA | 1..928 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:06 Download gff for
BS10020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7583-PA | 1..928 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:11:55 Download gff for
BS10020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RE | 372..1306 | 9..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:12 Download gff for
BS10020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RE | 372..1306 | 9..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:12 Download gff for
BS10020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13020854..13021114 | 518..778 | 100 | -> | Plus |
3R | 13021176..13021315 | 779..917 | 98 | | Plus |
3R | 13019616..13019814 | 11..211 | 98 | -> | Plus |
3R | 13019896..13020201 | 212..517 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:11:55 Download gff for
BS10020.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8845338..8845536 | 11..211 | 98 | -> | Plus |
arm_3R | 8845618..8845923 | 212..517 | 100 | -> | Plus |
arm_3R | 8846576..8846836 | 518..778 | 100 | -> | Plus |
arm_3R | 8846898..8847037 | 779..917 | 98 | | Plus |
BS10020.complete Sequence
1193 bp (1193 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636529
> BS10020.complete
GAAGTTATCAGTCGACATGGACAAAAATCTGATGATGCCGAAGCGTTCGC
GCATCGATGTCAAGGGCAACTTTGCCAACGGACCGCTGCAAGCACGCCCA
CTGGTGGCCCTACTCGATGGACGCGACTGCTCCATCGAGATGCCCATCCT
AAAGGATGTGGCCACGGTGGCCTTTTGCGATGCACAAAGCACCTCCGAAA
TACACGAGAAGGTCCTCAACGAGGCAGTGGGAGCTCTGATGTGGCACACC
ATCATCTTGACAAAGGAGGATCTTGAGAAGTTCAAAGCTTTACGCATTAT
CGTGCGCATCGGCAGCGGCACAGACAACATTGATGTAAAGGCGGCGGGCG
AACTGGGCATCGCCGTGTGCAACGTTCCCGGCTACGGAGTCGAGGAGGTG
GCGGACACGACGATGTGCCTCATCCTCAACCTCTACCGGCGGACATACTG
GCTAGCGAACATGGTGCGCGAGGGCAAGAAGTTCACCGGACCCGAGCAAG
TGCGGGAGGCTGCGCATGGCTGTGCACGCATCCGCGGCGACACCTTGGGT
CTGGTGGGACTGGGCCGCATTGGTAGCGCCGTGGCCCTGCGGGCTAAGGC
GTTCGGCTTCAACGTCATCTTCTACGATCCCTACCTGCCCGATGGCATCG
ACAAGTCGCTGGGCCTAACTCGCGTCTACACGCTGCAGGACCTGCTTTTC
CAGTCCGATTGCGTCTCACTGCATTGCACGCTCAACGAGCACAACCATCA
TTTAATCAATGAATTCACAATTAAACAGATGCGACCTGGTGCATTTCTGG
TGAACACCGCACGCGGCGGTCTGGTCGATGACGAGACCCTGGCGTTGGCG
CTGAAGCAGGGAAGGATAAGAGCTGCCGCCCTGGACGTTCACGAAAACGA
ACCTTACAATGTATTTCAAGGCGCACTGAAGGATGCCCCAAATCTGATTT
GCACACCGCACGCCGCCTTCTTCAGCGACGCGTCCGCAACGGAGCTGCGC
GAAATGGCAGCCACCGAGATCCGGCGGGCGATCGTCGGCAATATTCCAGA
CGTGCTGAGGAATTGCGTCAACAAGGAGTACTTCATGCGCACGCCGCCTG
CCGCTGCCGCCGGGGGCGTGGCGGCGGCTGTTTATCCCGAAGGTAAACTA
CAAATGATATCAAATCAAGAAAAGTAGAAGCTTTCTAGACCAT
BS10020.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtBP-RA | 1161 | CG7583-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
CtBP-RB | 1161 | CG7583-PB | 1..1161 | 17..1177 | 5805 | 100 | Plus |
CtBP-RD | 1161 | CG7583-PD | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtBP-RA | 3959 | CG7583-RA | 375..1540 | 13..1178 | 5815 | 99.9 | Plus |
CtBP-RB | 1719 | CG7583-RB | 515..1680 | 13..1178 | 5815 | 99.9 | Plus |
CtBP-RD | 3946 | CG7583-RD | 362..1527 | 13..1178 | 5815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13019894..13020202 | 210..518 | 1545 | 100 | Plus |
3R | 32079331 | 3R | 13020849..13021114 | 513..778 | 1315 | 99.6 | Plus |
3R | 32079331 | 3R | 13021420..13021678 | 920..1178 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 13019616..13019816 | 13..213 | 990 | 99.5 | Plus |
3R | 32079331 | 3R | 13021172..13021317 | 775..920 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:22:51 has no hits.
BS10020.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:39 Download gff for
BS10020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RB | 1..1161 | 17..1177 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:24 Download gff for
BS10020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RB | 512..1680 | 9..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:36:23 Download gff for
BS10020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RD | 366..1526 | 17..1177 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:39 Download gff for
BS10020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RB | 512..1680 | 9..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:08 Download gff for
BS10020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CtBP-RD | 366..1526 | 17..1177 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:08 Download gff for
BS10020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13020854..13021114 | 518..778 | 100 | -> | Plus |
3R | 13021176..13021316 | 779..919 | 100 | -> | Plus |
3R | 13021420..13021677 | 920..1177 | 100 | | Plus |
3R | 13019620..13019814 | 17..211 | 100 | -> | Plus |
3R | 13019896..13020201 | 212..517 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:36:23 Download gff for
BS10020.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8845342..8845536 | 17..211 | 100 | -> | Plus |
arm_3R | 8845618..8845923 | 212..517 | 100 | -> | Plus |
arm_3R | 8846576..8846836 | 518..778 | 100 | -> | Plus |
arm_3R | 8846898..8847038 | 779..919 | 100 | -> | Plus |
arm_3R | 8847142..8847399 | 920..1177 | 100 | | Plus |
BS10020.pep Sequence
Translation from 16 to 1176
> BS10020.pep
MDKNLMMPKRSRIDVKGNFANGPLQARPLVALLDGRDCSIEMPILKDVAT
VAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKALRIIVRIGS
GTDNIDVKAAGELGIAVCNVPGYGVEEVADTTMCLILNLYRRTYWLANMV
REGKKFTGPEQVREAAHGCARIRGDTLGLVGLGRIGSAVALRAKAFGFNV
IFYDPYLPDGIDKSLGLTRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEF
TIKQMRPGAFLVNTARGGLVDDETLALALKQGRIRAAALDVHENEPYNVF
QGALKDAPNLICTPHAAFFSDASATELREMAATEIRRAIVGNIPDVLRNC
VNKEYFMRTPPAAAAGGVAAAVYPEGKLQMISNQEK*
BS10020.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CtBP-PA | 386 | CG7583-PA | 1..386 | 1..386 | 1993 | 100 | Plus |
CtBP-PB | 386 | CG7583-PB | 1..386 | 1..386 | 1993 | 100 | Plus |
CtBP-PD | 386 | CG7583-PD | 1..386 | 1..386 | 1993 | 100 | Plus |
CtBP-PC | 386 | CG7583-PC | 1..386 | 1..386 | 1993 | 100 | Plus |
CtBP-PF | 383 | CG7583-PF | 1..383 | 1..386 | 1964 | 99.2 | Plus |