Clone Sequence Records
BS10023.5prime Sequence
922 bp (810 high quality bases) assembled on 2006-04-20
> BS10023.5prime
GAAGTTATCAGTCGACATGATTCGGCTACTCAAGACGCTTCTTTATTGCC
TGCTCCTCATCTCCCCTGCTGATGTGCTGGGCCGGCTTAATGCCAGAAAG
TCGGCGAACGAGGCGAGTCTCTATAGCGATACAGACAATGTGATTATGTT
GGACATCGAATCGCTGAGGCCAGCTCTAAACTTGAAGAACAGCAAGCTGG
TTCAGTTCCTCAACAGCTTCTGCGGTGACTGTCATCGCTTCGCACCGGTC
TTCAAGACCCTTTCCCGCGACCTCTACAAGTGGCGAAGAATTCTCCGGAT
CTATGCCGTAGATTGTGCCCAGGAGAGAAATGCTCAACTCTGCAGGGAAT
TCAATATCCGCCAGACGCCATCATTGCGATTCTTTGGTCCCGACATGAGG
AAGAACGATGATGTTCTTGGAGCGGTAATCCCAGGCCAAGATCCCGAGTT
CATTAGCTCAACACTGGCCGAATTGGTATCCCAAAATGACTATGGACCCG
GCCAGCCAAACTTTCGTCCCCTAAAAGCAACAGACTATGAAATTTTCCAA
GATCAAGATGGGGAAACTCCGATACAATTTGTGGCTCTTGTCCTTCAGCC
AAAAAATTCAAAGATCGGCAGGGACACGCTGCTAGAACTGCTGCCATTCA
AAGAGCTATCGGTGAGGATAATCGAAGATTCTCAGATATTTAACGAATTT
GGACTGGGTCCCGACGACCAAAAACTGGCTATAGTTGATAGAAATGGAAC
CGCCCAGTATCTTACACCATCTTCGGACTCCAGTGAAGCGTATGCCAGCA
CTATTGGAGACTTCCTTAAGAACCGCAATATTCAGCCAGATCCACCACTA
CCCATCGCTGTAGCCCCAACCTTTACTGAGTTTCTGGATCACCAAAATCA
AGCGATACTAACTAAAGTGCTT
BS10023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17843-PA | 1659 | CG17843-RA | 1..906 | 17..922 | 4480 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17843-RA | 1800 | CG17843-RA | 43..948 | 17..922 | 4500 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21913789..21914694 | 17..922 | 4500 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:27:41 has no hits.
BS10023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:57 Download gff for
BS10023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:14 Download gff for
BS10023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:46:39 Download gff for
BS10023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-RA | 37..948 | 11..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:47 Download gff for
BS10023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-RA | 37..948 | 11..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:47 Download gff for
BS10023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21913783..21914694 | 11..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:46:39 Download gff for
BS10023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17739505..17740416 | 11..922 | 99 | | Plus |
BS10023.3prime Sequence
854 bp (805 high quality bases) assembled on 2006-04-19
> BS10023.3prime
ATGGTCTAGAAAGCTTCTAATCGTATCCCTGTGGAGTGGGAAGGCCATAA
AAGCTTACATTATTGATATCGTAGAGCTGTTTCAGATACTTAAGAACTTC
ATCTGTTCTCCACTCCGAGTCATTTGACCGGCAAGTGGGGCAATTCTCCG
CGCTGGGGAACTGAATCTTCGGGAACTTGGGATCCTCCGTAGAGTCTCCA
GCAATGCGTGCATTGACTTCGTTGTGGGCTGCCCACAGCCAGAGGATCTC
CTCGTCATGGGTTTTCACCGAAGTCAGATTACGACGAATGGCCATCTGCT
GAAAGTGTTCAGAGCAATCCGTGCAGCCGAAGAAGTACTTGGCGAATCCA
TGAAAGGTTTTCAGTATTGAGCCCGCCTCAAAGTAATTTGGTGGCTTAGC
TGCCTCCACGGTCAAATGGTGAAACAGTGTCCACATAGAGCAGGTAAAGC
TTCGCAGTAATGGCCGCGATCCAATGCAGCCAACGTATCGCCTTGCCTTA
AACACCCTTCGACCATTTTCAAGCGAATCAACCAAATCACCAAAGTCGGC
TCCCTTTATACTCTGCTTCGAGCTCAACGAGTTGTCCAGGTCAGTCAGCA
ATAGCTTTCCGTCCTTGTTCAATGGATTCAGGTATCGGAAAATCTTAATA
ATATTTTTAAGAGCATTCAGGCTATTACCCTCCAAAAGGACCCATTTACG
AAGCTCAATGTGCAGCAGTTTATCGATTGCCTGCTCCAAGTCGGCACGAT
AGACCTGCAGTGGTGGCGTAAGCACTTTAGTTAGTATCGCTTGATTTTGG
TGATCCAGAAACTCAGTAAAGTTTGGGGCTACAGCGATGGGTAGTGGTGG
ATCT
BS10023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17843-PA | 1659 | CG17843-RA | 822..1659 | 854..17 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17843-RA | 1800 | CG17843-RA | 864..1701 | 854..17 | 4190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21914610..21915447 | 854..17 | 4190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:24:05 has no hits.
BS10023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:56 Download gff for
BS10023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-PA | 822..1659 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:13 Download gff for
BS10023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-PA | 822..1659 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:42 Download gff for
BS10023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-RA | 864..1707 | 10..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:18:37 Download gff for
BS10023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-RA | 864..1707 | 10..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:18:37 Download gff for
BS10023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21914610..21915453 | 10..854 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:42 Download gff for
BS10023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17740332..17741175 | 10..854 | 99 | | Minus |
BS10023.complete Sequence
1691 bp (1691 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636530
> BS10023.complete
GAAGTTATCAGTCGACATGATTCGGCTACTCAAGACGCTTCTTTATTGCC
TGCTCCTCATCTCCCCTGCTGATGTGCTGGGCCGGCTTAATGCCAGAAAG
TCGGCGAACGAGGCGAGTCTCTATAGCGATACAGACAATGTGATTATGTT
GGACATCGAATCGCTGAGGCCAGCTCTAAACTTGAAGAACAGCAAGCTGG
TTCAGTTCCTCAACAGCTTCTGCGGTGACTGTCATCGCTTCGCACCGGTC
TTCAAGACCCTTTCCCGCGACCTCTACAAGTGGCGAAGAATTCTCCGGAT
CTATGCCGTAGATTGTGCCCAGGAGAGAAATGCTCAACTCTGCAGGGAAT
TCAATATCCGCCAGACGCCATCATTGCGATTCTTTGGTCCCGACATGAGG
AAGAACGATGATGTTCTTGGAGCGGTAATCCCAGGCCAAGATCCCGAGTT
CATTAGCTCAACACTGGCCGAATTGGTATCCCAAAATGACTATGGACCCG
GCCAGCCAAACTTTCGTCCCCTAAAAGCAACAGACTATGAAATTTTCCAA
GATCAAGATGGGGAAACTCCGATACAATTTGTGGCTCTTGTCCTTCAGCC
AAAAAATTCAAAGATCGGCAGGGACACGCTGCTAGAACTGCTGCCATTCA
AAGAGCTATCGGTGAGGATAATCGAAGATTCTCAGATATTTAACGAATTT
GGACTGGGTCCCGACGACCAAAAACTGGCTATAGTTGATAGAAATGGAAC
CGCCCAGTATCTTACACCATCTTCGGACTCCAGTGAAGCGTATGCCAGCA
CTATTGGAGACTTCCTTAAGAACCGCAATATTCAGCCAGATCCACCACTA
CCCATCGCTGTAGCCCCAAACTTTACTGAGTTTCTGGATCACCAAAATCA
AGCGATACTAACTAAAGTGCTTACGCCACCACTGCAGGTCTATCGTGCCG
ACTTGGAGCAGGCAATCGATAAACTGCTGCACATTGAGCTTCGTAAATGG
GTCCTTTTGGAGGGTAATAGCCTGAATGCTCTTAAAAATATTATTAAGAT
TTTCCGATACCTGAATCCATTGAACAAGGACGGAAAGCTATTGCTGACTG
ACCTGGACAACTCGTTGAGCTCGAAGCAGAGTATAAAGGGAGCCGACTTT
GGTGATTTGGTTGATTCGCTTGAAAATGGTCGAAGGGTGTTTAAGGCAAG
GCGATACGTTGGCTGCATTGGATCGCGGCCATTACTGCGAAGCTTTACCT
GCTCTATGTGGACACTGTTTCACCATTTGACCGTGGAGGCAGCTAAGCCA
CCAAATTACTTTGAGGCGGGCTCAATACTGAAAACCTTTCATGGATTCGC
CAAGTACTTCTTCGGCTGCACGGATTGCTCTGAACACTTTCAGCAGATGG
CCATTCGTCGTAATCTGACTTCGGTGAAAACCCATGACGAGGAGATCCTC
TGGCTGTGGGCAGCCCACAACGAAGTCAATGCACGCATTGCTGGAGACTC
TACGGAGGATCCCAAGTTCCCGAAGATTCAGTTCCCCAGCGCGGAGAATT
GCCCCACTTGCCGGTCAAATGACTCGGAGTGGAGAACAGATGAAGTTCTT
AAGTATCTGAAACAGCTCTACGATATCAATAATGTAAGCTTTTATGGCCT
TCCCACTCCACAGGGATACGATTAGAAGCTTTCTAGACCAT
BS10023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17843-RA | 1659 | CG17843-PA | 1..1659 | 17..1675 | 8280 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17843-RA | 1800 | CG17843-RA | 43..1701 | 17..1675 | 8280 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21913789..21915447 | 17..1675 | 8280 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:31:07 has no hits.
BS10023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:40 Download gff for
BS10023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-RA | 1..1659 | 17..1675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:25 Download gff for
BS10023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-RA | 35..1705 | 11..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:22 Download gff for
BS10023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-RA | 43..1701 | 17..1675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:40 Download gff for
BS10023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-RA | 35..1705 | 11..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:28 Download gff for
BS10023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17843-RA | 43..1701 | 17..1675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:28 Download gff for
BS10023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21913789..21915447 | 17..1675 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:22 Download gff for
BS10023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17739511..17741169 | 17..1675 | 99 | | Plus |
BS10023.pep Sequence
Translation from 16 to 1674
> BS10023.pep
MIRLLKTLLYCLLLISPADVLGRLNARKSANEASLYSDTDNVIMLDIESL
RPALNLKNSKLVQFLNSFCGDCHRFAPVFKTLSRDLYKWRRILRIYAVDC
AQERNAQLCREFNIRQTPSLRFFGPDMRKNDDVLGAVIPGQDPEFISSTL
AELVSQNDYGPGQPNFRPLKATDYEIFQDQDGETPIQFVALVLQPKNSKI
GRDTLLELLPFKELSVRIIEDSQIFNEFGLGPDDQKLAIVDRNGTAQYLT
PSSDSSEAYASTIGDFLKNRNIQPDPPLPIAVAPNFTEFLDHQNQAILTK
VLTPPLQVYRADLEQAIDKLLHIELRKWVLLEGNSLNALKNIIKIFRYLN
PLNKDGKLLLTDLDNSLSSKQSIKGADFGDLVDSLENGRRVFKARRYVGC
IGSRPLLRSFTCSMWTLFHHLTVEAAKPPNYFEAGSILKTFHGFAKYFFG
CTDCSEHFQQMAIRRNLTSVKTHDEEILWLWAAHNEVNARIAGDSTEDPK
FPKIQFPSAENCPTCRSNDSEWRTDEVLKYLKQLYDINNVSFYGLPTPQG
YD*
BS10023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17843-PA | 552 | CG17843-PA | 1..552 | 1..552 | 2896 | 100 | Plus |
| CG6690-PA | 562 | CG6690-PA | 10..540 | 9..541 | 995 | 39.8 | Plus |
| CG31413-PA | 561 | CG31413-PA | 11..553 | 7..545 | 970 | 37.9 | Plus |
| CG4670-PB | 637 | CG4670-PB | 44..570 | 35..545 | 865 | 35.8 | Plus |
| CG4670-PA | 637 | CG4670-PA | 44..570 | 35..545 | 865 | 35.8 | Plus |
