Clone Sequence Records
BS10025.3prime Sequence
876 bp (861 high quality bases) assembled on 2006-04-19
> BS10025.3prime
ATGGTCTAGAAAGCTTTTAGGCCCCACCCATGTCGTCCACGGCGATGGCA
CACAGCACGTACATCATTCCGGCGCTGAGGAGCGCCGTAACCGGCACCGT
TACGATCCATGCATAGGCAATATTCCGGAATAGATGCCAATCGACACTGC
CATCATCCATGGGCGCAACTTCGTTATGGGTCTCCTTATCGGTCTGATCA
TTCGGCTGACTCTTCTTCTTGCGACCTGATGCACTCACATGACCCACAAA
AACCACCGAACCGACCTTGCAGTGAGTAGTCGAAATGGGCAGGCCAATTT
TGCTGGCCAGCAGTACGGTGATGGCAGCTCCGACTTCAATAGTAAAGCCA
GTCGATGAGGTTATTTTCGTAAGGTCATTGCCAATGGTCTCGATGACTCG
TCGTCCCCACAGCCAGAGACCCACAGAGATGCCGATGCCGCCGTAGATCA
GAATATAGATGGGACTCTCGGCCTGCTGCATAACCGATCCCTCGCGATAG
ATCATATAGAGGGCAATCAGTGGGCCGATGGCGTTGCTCACATCATTGCC
GCCGTGCGCAAAACTGCCAAATGTGGCTGTCAGGATCTGCAGAAACGAGA
AGAGCATTGAAATCTCCGGAGTCTCCTCGGCGCCACTGGTTCTTCGTCCA
CCGCCCGTCGTTCGTTTCAGCTCCTCCTCCTGCTCATTCAGCGCCTCCTT
GCTCTCGATCAGAGGAACCTTGCTGGAATTGGGCGATAAAGTGGAACTGA
TCATAAGATCAAGGCTGCCGCCGCTCTCCACCACTTGAAGGTTGTTATTT
GTGGCTTTGGTCGATCCGGTTTCAAGTCCGTGCCAATGGAGTTCGTCTTG
CTCTTCTGCTCCTCTTTGGGCGACTG
BS10025.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7628-PA | 2004 | CG7628-RA | 1198..2004 | 823..17 | 4035 | 100 | Minus |
| CG7628-PA | 2004 | CG7628-RA | 1144..1197 | 876..823 | 245 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42575-RB | 2953 | CG42575-RB | 1430..2291 | 876..16 | 4270 | 99.8 | Minus |
| CG42575-RA | 3715 | CG7628-RA | 2192..3053 | 876..16 | 4270 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11133093..11133597 | 854..351 | 2475 | 99.8 | Minus |
| 3L | 28110227 | 3L | 11133667..11134001 | 350..16 | 1675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:57:18 has no hits.
BS10025.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:58 Download gff for
BS10025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7628-PA | 1144..2004 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:16 Download gff for
BS10025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7628-PA | 1144..2004 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:45:46 Download gff for
BS10025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42575-RA | 2192..3053 | 16..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:26 Download gff for
BS10025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42575-RA | 2192..3053 | 16..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:26 Download gff for
BS10025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11133001..11133024 | 853..876 | 95 | -> | Minus |
| 3L | 11133095..11133597 | 351..852 | 99 | -> | Minus |
| 3L | 11133667..11134001 | 16..350 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:45:46 Download gff for
BS10025.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11126101..11126124 | 853..876 | 95 | -> | Minus |
| arm_3L | 11126195..11126697 | 351..852 | 99 | -> | Minus |
| arm_3L | 11126767..11127101 | 16..350 | 100 | | Minus |
BS10025.5prime Sequence
936 bp (826 high quality bases) assembled on 2006-04-19
> BS10025.5prime
GAAGTTATCAGTCGACATGGAGAGCTTTGCGCCGGAATTACTTTGGATGG
TAGTCATCGGATTCCTAATCGCCTTCGTACTCGCCTTTGGCATCGGTGCC
AACGACGTGGCCAACTCATTTGGCACCAGTGTCGGCTCCGGTGTTCTGAC
CATCCGGCAGGCATGCGTGCTGGCCACCATTTGCGAAATTTCGGGTGCCG
TTTTGATTGGCTACAAGGTATCGGATACCATGCGCAAGGGAATCCTAGAA
GTTGGCCTATACGAGGGCGCCGAGGAGGTTCTGATGCTGGGCTGCGTGGC
CGCATTGGCCAGTAGCGCCGTTTGGCTGCTGGTGGCCACCTTTTTGAAGT
TGCCTATTTCGGGAACGCACAGTATCGTTGGCTCTACCATTGGATTTTCG
CTAGTGGCGCGCGGTGTACAGGGCCTAAAGTGGTCTACTTTGGGCACAAT
CGTCGGATCGTGGTTCATCTCACCGGTGCTGAGTGGAATTGTGAGCATTC
TGCTCTTCCTGGCCATTCGTCGTTTCATCCTACGTGCCCAGGAGCCGCTC
AAGGCCGGATTTCGATCGCTGCCCATCTTCTACGGTGTAACGTTCTTCAT
CAACGTTATCAGCGTTGTGTTGGACGGGCCCAAGCTGCTCTACATGGACA
ACATACCCACTTGGATAGCACTGACCGCCAGTTTTGGTCTCTCTTTGCTG
GTGGCATTGCTTACGCAATTGGTAGTGGTGCCTTTGCAGCGGCGCAAGAT
TGCCAAACGATTGCGGGCCGAGAATCCTGTCAAGTTTAATTTCGAGGACT
CCGTGGAATCTTCCCCGTCGGGAAGTCCCAAGAAGCAGCGTCGTCCCCTG
TCGCTGTTTAGCGAAGGAAAGCCACTGCCTGCCATCGCAGAAATAACCGA
GCTGGTCTCGTTGAGCGACAACTCGCCGAGGACCTT
BS10025.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7628-PA | 2004 | CG7628-RA | 1..920 | 17..936 | 4575 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42575-RB | 2953 | CG42575-RB | 287..1206 | 17..936 | 4585 | 99.9 | Plus |
| CG42575-RA | 3715 | CG7628-RA | 1049..1968 | 17..936 | 4585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11129952..11130549 | 209..806 | 2990 | 100 | Plus |
| 3L | 28110227 | 3L | 11129688..11129881 | 17..210 | 970 | 100 | Plus |
| 3L | 28110227 | 3L | 11132647..11132777 | 806..936 | 640 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:35:39 has no hits.
BS10025.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:26:59 Download gff for
BS10025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7628-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:17 Download gff for
BS10025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7628-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:50:57 Download gff for
BS10025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42575-RA | 1040..1968 | 8..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:16 Download gff for
BS10025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42575-RA | 1040..1968 | 8..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:16 Download gff for
BS10025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11132648..11132777 | 807..936 | 99 | | Plus |
| 3L | 11129679..11129880 | 8..209 | 98 | -> | Plus |
| 3L | 11129953..11130549 | 210..806 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:50:57 Download gff for
BS10025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11122779..11122980 | 8..209 | 98 | -> | Plus |
| arm_3L | 11123053..11123649 | 210..806 | 100 | -> | Plus |
| arm_3L | 11125748..11125877 | 807..936 | 99 | | Plus |
BS10025.complete Sequence
2036 bp assembled on 2007-11-30
GenBank Submission: FJ636531
> BS10025.complete
GAAGTTATCAGTCGACATGGAGAGCTTTGCGCCGGAATTACTTTGGATGG
TAGTCATCGGATTCCTAATCGCCTTCGTACTCGCCTTTGGCATCGGTGCC
AACGACGTGGCCAACTCATTTGGCACCAGTGTCGGCTCCGGTGTTCTGAC
CATCCGGCAGGCATGCGTGCTGGCCACCATTTGCGAAATTTCGGGTGCCG
TTTTGATTGGCTACAAGGTATCGGATACCATGCGCAAGGGAATCCTAGAA
GTTGGCCTATACGAGGGCGCCGAGGAGGTTCTGATGCTGGGCTGCGTGGC
CGCATTGGCCAGTAGCGCCGTTTGGCTGCTGGTGGCCACCTTTTTGAAGT
TGCCTATTTCGGGAACGCACAGTATCGTTGGCTCTACCATTGGATTTTCG
CTAGTGGCGCGCGGTGTACAGGGCCTAAAGTGGTCTACTTTGGGCACAAT
CGTCGGATCGTGGTTCATCTCACCGGTGCTGAGTGGAATTGTGAGCATTC
TGCTCTTCCTGGCCATTCGTCGTTTCATCCTACGTGCCCAGGAGCCGCTC
AAGGCCGGATTTCGATCGCTGCCCATCTTCTACGGTGTAACGTTCTTCAT
CAACGTTATCAGCGTTGTGTTGGACGGGCCCAAGCTGCTCTACATGGACA
ACATACCCACTTGGATAGCACTGACCGCCAGTTTTGGTCTCTCTTTGCTG
GTGGCATTGCTTACGCAATTGGTAGTGGTGCCTTTGCAGCGGCGCAAGAT
TGCCAAACGATTGCGGGCCGAGAATCCTGTCAAGTTTAATTTCGAGGACT
CCGTGGAATCTTCCCCGTCGGGAAGTCCCAAGAAGCAGCGTCGTCCCCTG
TCGCTGGTTAGCGAAGGAAAGCCACTGCCTGCCATCGCAGAAATAACCGA
GCTGGTCTCGTTGAGCGACAACTCGCCGAGGACCTTTAAGTTGGCTCCAT
TCGGATTGGCGGCCAAGAACAACAATGCGCTTGGGGAGGAGTACAAGATC
GATCCGCAGCTGATCAAAAAGGCTGAGGATCTGCTGGGCAAGGCTAGCCT
GGACAACACGGATCTGACGATTACCAGTCTGAATTTTATCGACGAGCAGC
AGCAACAACAGCAGCAGCAGCAAAATGGACGCAAGTTGCAGGAGTGCTTC
AAGCGGATGCAGTCGCCCAAGGAGGAGCAGAAGAGCAAGACGAACTCCAT
TGGCACGGACTTGGAAACCGGATCGACCAAAGCCACAAATAACAACCTTC
AAGTGGTGGAGAGCGGCGGCAGCCTTGATCTTATGATCAGTTCCACTTTA
TCGCCCAATTCCAGCAAGGTTCCTCTGATCGAGAGCAAGGAGGCGCTGAA
TGAGCAGGAGGAGGAGCTGAAACGAACGACGGGCGGTGGACGAAGAACCA
GTGGCGCCGAGGAGACTCCGGAGATTTCAATGCTCTTCTCGTTTCTGCAG
ATCCTGACAGCCACATTTGGCAGTTTTGCGCACGGCGGCAATGATGTGAG
CAACGCCATCGGCCCACTGATTGCCCTCTATATGATCTATCGCGAGGGAT
CGGTTATGCAGCAGGCCGAGAGTCCCATCTATATTCTGATCTACGGCGGC
ATCGGCATCTCTGTGGGTCTCTGGCTGTGGGGACGACGAGTCATCGAGAC
CATTGGCAATGACCTTACGAAAATAACCTCATCGACTGGCTTTACTATTG
AAGTCGGAGCTGCCATCACCGTACTGCTGGCCAGCAAAATTGGCCTGCCC
ATTTCGACTACTCACTGCAAGGTCGGTTCGGTGGTTTTTGTGGGTCATGT
GAGTGCATCAGGTCGCAAGAAGAAGAGTCAGCCGAATGATCAGACCGATA
AGGAGACCCATAACGAAGTTGCGCCCATGGATGATGGCAGTGTCGATTGG
CATCTATTCCGGAATATTGCCTATGCATGGATCGTAACGGTGCCGGTTAC
GGCGCTCCTCAGCGCCGGAATGATGTACGTGCTGTGTGCCATCGCCGTGG
ACGACATGGGTGGGGCCTAAAAGCTTTCTAGACCAT
BS10025.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42575-RB | 2004 | CG42575-PB | 1..2004 | 17..2020 | 10020 | 100 | Plus |
| CG42575-RA | 2004 | CG42575-PA | 1..2004 | 17..2020 | 10020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42575-RB | 2953 | CG42575-RB | 287..2291 | 17..2021 | 10025 | 100 | Plus |
| CG42575-RA | 3715 | CG7628-RA | 1049..3053 | 17..2021 | 10025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11129952..11130549 | 209..806 | 2990 | 100 | Plus |
| 3L | 28110227 | 3L | 11133093..11133597 | 1182..1686 | 2525 | 100 | Plus |
| 3L | 28110227 | 3L | 11132647..11133024 | 806..1183 | 1890 | 100 | Plus |
| 3L | 28110227 | 3L | 11133667..11134001 | 1687..2021 | 1675 | 100 | Plus |
| 3L | 28110227 | 3L | 11129688..11129881 | 17..210 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:14:24 has no hits.
BS10025.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:45 Download gff for
BS10025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7628-RA | 1..2004 | 17..2020 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:56 Download gff for
BS10025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7628-RA | 331..2344 | 8..2021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:12 Download gff for
BS10025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42575-RA | 1049..3050 | 17..2018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:33 Download gff for
BS10025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7628-RA | 340..2341 | 17..2018 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:53 Download gff for
BS10025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42575-RA | 1049..3050 | 17..2018 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:53 Download gff for
BS10025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11129688..11129880 | 17..209 | 100 | -> | Plus |
| 3L | 11129953..11130549 | 210..806 | 100 | -> | Plus |
| 3L | 11132648..11133024 | 807..1183 | 100 | -> | Plus |
| 3L | 11133095..11133597 | 1184..1686 | 100 | -> | Plus |
| 3L | 11133667..11133998 | 1687..2018 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:12 Download gff for
BS10025.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11122788..11122980 | 17..209 | 100 | -> | Plus |
| arm_3L | 11123053..11123649 | 210..806 | 100 | -> | Plus |
| arm_3L | 11125748..11126124 | 807..1183 | 100 | -> | Plus |
| arm_3L | 11126195..11126697 | 1184..1686 | 100 | -> | Plus |
| arm_3L | 11126767..11127098 | 1687..2018 | 100 | | Plus |
BS10025.pep Sequence
Translation from 16 to 2019
> BS10025.pep
MESFAPELLWMVVIGFLIAFVLAFGIGANDVANSFGTSVGSGVLTIRQAC
VLATICEISGAVLIGYKVSDTMRKGILEVGLYEGAEEVLMLGCVAALASS
AVWLLVATFLKLPISGTHSIVGSTIGFSLVARGVQGLKWSTLGTIVGSWF
ISPVLSGIVSILLFLAIRRFILRAQEPLKAGFRSLPIFYGVTFFINVISV
VLDGPKLLYMDNIPTWIALTASFGLSLLVALLTQLVVVPLQRRKIAKRLR
AENPVKFNFEDSVESSPSGSPKKQRRPLSLVSEGKPLPAIAEITELVSLS
DNSPRTFKLAPFGLAAKNNNALGEEYKIDPQLIKKAEDLLGKASLDNTDL
TITSLNFIDEQQQQQQQQQNGRKLQECFKRMQSPKEEQKSKTNSIGTDLE
TGSTKATNNNLQVVESGGSLDLMISSTLSPNSSKVPLIESKEALNEQEEE
LKRTTGGGRRTSGAEETPEISMLFSFLQILTATFGSFAHGGNDVSNAIGP
LIALYMIYREGSVMQQAESPIYILIYGGIGISVGLWLWGRRVIETIGNDL
TKITSSTGFTIEVGAAITVLLASKIGLPISTTHCKVGSVVFVGHVSASGR
KKKSQPNDQTDKETHNEVAPMDDGSVDWHLFRNIAYAWIVTVPVTALLSA
GMMYVLCAIAVDDMGGA*
BS10025.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42575-PB | 667 | CG42575-PB | 1..667 | 1..667 | 3345 | 100 | Plus |
| CG42575-PA | 667 | CG7628-PA | 1..667 | 1..667 | 3345 | 100 | Plus |
