Clone Sequence Records
BS10027.3prime Sequence
824 bp (819 high quality bases) assembled on 2006-04-19
> BS10027.3prime
ATGGTCTAGAAAGCTTTTAAATGATGGTTATAAACTCGGGATTCATGAAA
GAAAATCCGATAAAATCGTTCTGGTCCAAATTCATCATAAAAAGCTTGTC
CGTTGGAGTTAAGTCCGTCTTCTCCTTGGTAAAGGCATCATCAAAGTTGC
TTATATCCTTGCGATGTTTAATCATTGGCTTAATAGGTGGCTCCATTTCG
CATGCCTCTGCCTTATCCCAGTCCACATTCCGGAAGAAAGGATGCGTGGT
AATCTCCTGTCTGGCATAGCGGCCTGCACCCAATCTATTGTTGGGCTTTT
TGGTCAGGAAGCTCGTTATTATATCCATGGCCTCCACGCTGAAATGCTTT
GGAAACACCGCCTTCTTGTCCTTTATGTTCCTAAAGACAGTAGTTTCATC
ATCTCCTTCGAATGGAGCCTGACCTGCCATGAATTCGAAAAGCAATACAC
CAAAAGACCACCAATCAGCGGCGATGGAATACGGATCGTAGCTAACAATT
TCGGGAGCCATATAATTTGGAGTACCACAAAAGGTTCGTGTGGTCTGCCG
CTCGGTAACGCCCTCTTTGCTCAATCCAAAGTCGACCAGCTTTACATGCC
CCTCACCATCCAGCAAAATGTTGTCCAGCTTTAGATCTCTATAGATAATA
TCACGCTCGTGGAGGAAAAACAGAGCAATAGCCACTTCCACAGCGTAAAA
AATAGCCACAGACTCCTTGAACCTTCCATACTGCTGCATATGGTACATAA
GATCTCCACCCTTACAGTACTCCATTACGAAGAATAATCGGTCCATAGTC
TGGAAACATGAGTGCATGGAGACG
BS10027.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6518-PA | 2103 | inaC-RA | 1296..2103 | 824..17 | 4040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaC-RA | 2351 | CG6518-RA | 1406..2215 | 824..15 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16900576..16900777 | 701..500 | 1010 | 100 | Minus |
2R | 25286936 | 2R | 16900837..16901025 | 499..311 | 945 | 100 | Minus |
2R | 25286936 | 2R | 16901285..16901439 | 169..15 | 775 | 100 | Minus |
2R | 25286936 | 2R | 16901083..16901223 | 310..170 | 705 | 100 | Minus |
2R | 25286936 | 2R | 16900390..16900512 | 824..702 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:59:57 has no hits.
BS10027.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:01 Download gff for
BS10027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaC-PA | 1296..2103 | 17..824 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:20 Download gff for
BS10027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6518-PA | 1296..2103 | 17..824 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:47:35 Download gff for
BS10027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaC-RA | 1406..2222 | 7..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:59 Download gff for
BS10027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaC-RA | 1406..2222 | 7..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:59 Download gff for
BS10027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16900576..16900777 | 500..701 | 100 | -> | Minus |
2R | 16900837..16901025 | 311..499 | 100 | -> | Minus |
2R | 16901083..16901223 | 170..310 | 100 | -> | Minus |
2R | 16901285..16901446 | 7..169 | 97 | | Minus |
2R | 16900390..16900512 | 702..824 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:47:35 Download gff for
BS10027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12787895..12788017 | 702..824 | 100 | -> | Minus |
arm_2R | 12788081..12788282 | 500..701 | 100 | -> | Minus |
arm_2R | 12788342..12788530 | 311..499 | 100 | -> | Minus |
arm_2R | 12788588..12788728 | 170..310 | 100 | -> | Minus |
arm_2R | 12788790..12788951 | 7..169 | 97 | | Minus |
BS10027.5prime Sequence
767 bp (746 high quality bases) assembled on 2006-04-19
> BS10027.5prime
GAAGTTATCAGTCGACATGGCTGCGGCTGCTGTTGCCACACCGGGGGCCA
CTGTGCTCCCTCCCTCGGTGCCCAGTGCCGCTCCAGGGGCCAAGGCTCCA
GCGGCTGGAGCTGGCAAAGGTCCAGGAAATCTACTGGAGATCACTGGCGA
AGCAAATATCGTCAACTATATGAAGAATCGTCTAAGGAAGGGTGCGATGA
AGCGAAAGGGTCTCGAAATGGTCAATGGTCATCGTTTCGGAGTTAGATTC
TTTAAGAATCCAACCTACTGCGGTCATTGCAAGGATTTCATCTGGGGCTT
TGGCAAGCAAGGTTTTCAGTGCGAGGAATGCCGCTTCAACATTCACCAGA
AGTGCTGTAAATTTGTGGTGTTCAAATGTCCTGGCAAGGACACGGACTTC
GATGCCGACTGCGCTAAGGTGAAGCACGGCTGGATTTCCACCACCTACAC
CACACCGACATTCTGCGACGAGTGCGGACTGCTGCTCCATGGAGTCGCCC
ATCAGGGCGTCAAGTGCGAGAATTGCAACCTAAATGTGCATCACGCCTGC
CAGGAGACAGTGCCACCGATGTGTGGTGCGGACATCAGCGAGGTGAGGGG
TAAACTACTGCTATACGTCGAGCTTAAGGGCAATAACTTGAAAGTTGATA
TTAAGGAGGCAGCTAACCTCATTCCCATGGATACCAACGGGTTTAGCGAT
CCCTATATTGCAGTGCAAATGCATCCGGACCGTTCGGGGCGCACCAAAAA
GAAGACCAAGACCATTC
BS10027.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6518-PA | 2103 | inaC-RA | 1..751 | 17..767 | 3755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaC-RA | 2351 | CG6518-RA | 111..861 | 17..767 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16898645..16898923 | 17..295 | 1395 | 100 | Plus |
2R | 25286936 | 2R | 16899169..16899364 | 326..521 | 980 | 100 | Plus |
2R | 25286936 | 2R | 16899425..16899558 | 522..655 | 655 | 99.3 | Plus |
2R | 25286936 | 2R | 16899615..16899731 | 651..767 | 585 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1103..1145 | 385..427 | 107 | 72.1 | Plus |
BS10027.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:02 Download gff for
BS10027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaC-PA | 1..751 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:22 Download gff for
BS10027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6518-PA | 1..751 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:48:07 Download gff for
BS10027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaC-RA | 111..861 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:00 Download gff for
BS10027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaC-RA | 111..861 | 17..767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:00 Download gff for
BS10027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16899170..16899364 | 327..521 | 100 | -> | Plus |
2R | 16899425..16899553 | 522..650 | 100 | -> | Plus |
2R | 16899615..16899731 | 651..767 | 100 | | Plus |
2R | 16898645..16898922 | 17..294 | 100 | -> | Plus |
2R | 16899084..16899115 | 295..326 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:48:07 Download gff for
BS10027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12786930..12787058 | 522..650 | 100 | -> | Plus |
arm_2R | 12786150..12786427 | 17..294 | 100 | -> | Plus |
arm_2R | 12786589..12786620 | 295..326 | 100 | -> | Plus |
arm_2R | 12786675..12786869 | 327..521 | 100 | -> | Plus |
arm_2R | 12787120..12787236 | 651..767 | 100 | | Plus |
BS10027.complete Sequence
2135 bp assembled on 2007-11-30
GenBank Submission: FJ636532
> BS10027.complete
GAAGTTATCAGTCGACATGGCTGCGGCTGCTGTTGCCACACCGGGGGCCA
CTGTGCTCCCTCCCTCGGTGCCCAGTGCCGCTCCAGGGGCCAAGGCTCCA
GCGGCTGGAGCTGGCAAAGGTCCAGGAAATCTACTGGAGATCACTGGCGA
AGCAAATATCGTCAACTATATGAAGAATCGTCTAAGGAAGGGTGCGATGA
AGCGAAAGGGTCTCGAAATGGTCAATGGTCATCGTTTCGGAGTTAGATTC
TTTAAGAATCCAACCTACTGCGGTCATTGCAAGGATTTCATCTGGGGCTT
TGGCAAGCAAGGTTTTCAGTGCGAGGAATGCCGCTTCAACATTCACCAGA
AGTGCTGTAAATTTGTGGTGTTCAAATGTCCTGGCAAGGACACGGACTTC
GATGCCGACTGCGCTAAGGTGAAGCACGGCTGGATTTCCACCACCTACAC
CACACCGACATTCTGCGACGAGTGCGGACTGCTGCTCCATGGAGTCGCCC
ATCAGGGCGTCAAGTGCGAGAATTGCAACCTAAATGTGCATCACGCCTGC
CAGGAGACAGTGCCACCGATGTGTGGTGCGGACATCAGCGAGGTGAGGGG
TAAACTACTGCTATACGTCGAGCTTAAGGGCAATAACTTGAAAGTTGATA
TTAAGGAGGCAGCTAACCTCATTCCCATGGATACCAACGGGTTTAGCGAT
CCCTATATTGCAGTGCAAATGCATCCGGACCGTTCGGGGCGCACCAAAAA
GAAGACCAAGACCATTCAGAAAAACCTCAATCCAGTGTTCAACGAGACTT
TTACTTTTGAGTTGCAGCCGCAGGACCGTGACAAGCGTTTGCTCATCGAG
GTTTGGGATTGGGATCGAACTTCTCGCAATGATTTCATGGGATCGTTCTC
GTTCAGCCTGGAGGAACTGCAAAAGGAGCCAGTTGATGGCTGGTATAAGT
TTCTGTCGCAAGTGGAGGGTGAACATTATAACATACCCTGTGTGGATGCC
TTTAATGATATAGCTCGCTTAAGGGATGAAGTTAGGCACGATCGTCGTCC
GAATGAAAAGCGTCGCATGGACAACAAGGATATGCCGCATAATATGAGCA
AACGCGATATGATTCGAGCTGCTGATTTCAACTTTGTTAAAGTTATTGGC
AAGGGATCCTTTGGCAAAGTCCTGCTGGCCGAGCGTCGTGGCACGGATGA
GCTGTATGCCGTGAAGGTCCTGCGAAAGGATGTCATTATCCAAACGGACG
ATATGGAGCTGCCAATGAATGAGAAGAAAATTCTAGCCCTATCCGGACGT
CCTCCTTTCCTCGTCTCCATGCACTCATGTTTCCAGACTATGGACCGATT
ATTCTTCGTAATGGAGTACTGTAAGGGTGGAGATCTTATGTACCATATGC
AGCAGTATGGAAGGTTCAAGGAGTCTGTGGCTATTTTTTACGCTGTGGAA
GTGGCTATTGCTCTGTTTTTCCTCCACGAGCGTGATATTATCTATAGAGA
TCTAAAGCTGGACAACATTTTGCTGGATGGTGAGGGGCATGTAAAGCTGG
TCGACTTTGGATTGAGCAAAGAGGGCGTTACCGAGCGGCAGACCACACGA
ACCTTTTGTGGTACTCCAAATTATATGGCTCCCGAAATTGTTAGCTACGA
TCCGTATTCCATCGCCGCTGATTGGTGGTCTTTTGGTGTATTGCTTTTCG
AATTCATGGCAGGTCAGGCTCCATTCGAAGGAGATGATGAAACTACTGTC
TTTAGGAACATAAAGGACAAGAAGGCGGTGTTTCCAAAGCATTTCAGCGT
GGAGGCCATGGATATAATAACGAGCTTCCTGACCAAAAAGCCCAACAATA
GATTGGGTGCAGGCCGCTATGCCAGACAGGAGATTACCACGCATCCTTTC
TTCCGGAATGTGGACTGGGATAAGGCAGAGGCATGCGAAATGGAGCCACC
TATTAAGCCAATGATTAAACATCGCAAGGATATAAGCAACTTTGATGATG
CCTTTACCAAGGAGAAGACGGACTTAACTCCAACGGACAAGCTTTTTATG
ATGAATTTGGACCAGAACGATTTTATCGGATTTTCTTTCATGAATCCCGA
GTTTATAACCATCATTTAAAAGCTTTCTAGACCAT
BS10027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaC-RA | 2103 | CG6518-PA | 1..2103 | 17..2119 | 10515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaC-RA | 2351 | CG6518-RA | 111..2215 | 17..2121 | 10525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16900114..16900512 | 1036..1434 | 1995 | 100 | Plus |
2R | 25286936 | 2R | 16898645..16898923 | 17..295 | 1395 | 100 | Plus |
2R | 25286936 | 2R | 16899832..16900060 | 808..1036 | 1145 | 100 | Plus |
2R | 25286936 | 2R | 16900576..16900777 | 1435..1636 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 16899169..16899364 | 326..521 | 980 | 100 | Plus |
2R | 25286936 | 2R | 16900837..16901025 | 1637..1825 | 945 | 100 | Plus |
2R | 25286936 | 2R | 16899615..16899771 | 651..807 | 785 | 100 | Plus |
2R | 25286936 | 2R | 16901285..16901439 | 1967..2121 | 775 | 100 | Plus |
2R | 25286936 | 2R | 16901083..16901223 | 1826..1966 | 705 | 100 | Plus |
2R | 25286936 | 2R | 16899425..16899558 | 522..655 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:20:38 has no hits.
BS10027.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:49 Download gff for
BS10027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaC-RA | 1..2103 | 17..2119 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:58 Download gff for
BS10027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaC-RA | 63..2174 | 17..2129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:56 Download gff for
BS10027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaC-RA | 111..2211 | 17..2117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:38 Download gff for
BS10027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaC-RA | 63..2163 | 17..2117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:29 Download gff for
BS10027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
inaC-RA | 111..2211 | 17..2117 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:29 Download gff for
BS10027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16899615..16899771 | 651..807 | 100 | -> | Plus |
2R | 16899832..16900060 | 808..1036 | 100 | -> | Plus |
2R | 16898645..16898922 | 17..294 | 100 | -> | Plus |
2R | 16899084..16899115 | 295..326 | 100 | -> | Plus |
2R | 16899170..16899364 | 327..521 | 100 | -> | Plus |
2R | 16899425..16899553 | 522..650 | 100 | -> | Plus |
2R | 16900115..16900512 | 1037..1434 | 100 | -> | Plus |
2R | 16900576..16900777 | 1435..1636 | 100 | -> | Plus |
2R | 16900837..16901025 | 1637..1825 | 100 | -> | Plus |
2R | 16901083..16901223 | 1826..1966 | 100 | -> | Plus |
2R | 16901285..16901435 | 1967..2117 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:56 Download gff for
BS10027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12786675..12786869 | 327..521 | 100 | -> | Plus |
arm_2R | 12787120..12787276 | 651..807 | 100 | -> | Plus |
arm_2R | 12786930..12787058 | 522..650 | 100 | -> | Plus |
arm_2R | 12786150..12786427 | 17..294 | 100 | -> | Plus |
arm_2R | 12786589..12786620 | 295..326 | 100 | -> | Plus |
arm_2R | 12787337..12787565 | 808..1036 | 100 | -> | Plus |
arm_2R | 12787620..12788017 | 1037..1434 | 100 | -> | Plus |
arm_2R | 12788081..12788282 | 1435..1636 | 100 | -> | Plus |
arm_2R | 12788342..12788530 | 1637..1825 | 100 | -> | Plus |
arm_2R | 12788588..12788728 | 1826..1966 | 100 | -> | Plus |
arm_2R | 12788790..12788940 | 1967..2117 | 100 | | Plus |
BS10027.pep Sequence
Translation from 16 to 2118
> BS10027.pep
MAAAAVATPGATVLPPSVPSAAPGAKAPAAGAGKGPGNLLEITGEANIVN
YMKNRLRKGAMKRKGLEMVNGHRFGVRFFKNPTYCGHCKDFIWGFGKQGF
QCEECRFNIHQKCCKFVVFKCPGKDTDFDADCAKVKHGWISTTYTTPTFC
DECGLLLHGVAHQGVKCENCNLNVHHACQETVPPMCGADISEVRGKLLLY
VELKGNNLKVDIKEAANLIPMDTNGFSDPYIAVQMHPDRSGRTKKKTKTI
QKNLNPVFNETFTFELQPQDRDKRLLIEVWDWDRTSRNDFMGSFSFSLEE
LQKEPVDGWYKFLSQVEGEHYNIPCVDAFNDIARLRDEVRHDRRPNEKRR
MDNKDMPHNMSKRDMIRAADFNFVKVIGKGSFGKVLLAERRGTDELYAVK
VLRKDVIIQTDDMELPMNEKKILALSGRPPFLVSMHSCFQTMDRLFFVME
YCKGGDLMYHMQQYGRFKESVAIFYAVEVAIALFFLHERDIIYRDLKLDN
ILLDGEGHVKLVDFGLSKEGVTERQTTRTFCGTPNYMAPEIVSYDPYSIA
ADWWSFGVLLFEFMAGQAPFEGDDETTVFRNIKDKKAVFPKHFSVEAMDI
ITSFLTKKPNNRLGAGRYARQEITTHPFFRNVDWDKAEACEMEPPIKPMI
KHRKDISNFDDAFTKEKTDLTPTDKLFMMNLDQNDFIGFSFMNPEFITII
*
BS10027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
inaC-PA | 700 | CG6518-PA | 1..700 | 1..700 | 3772 | 100 | Plus |
Pkc53E-PF | 670 | CG6622-PF | 18..667 | 44..697 | 2186 | 58.1 | Plus |
Pkc53E-PA | 670 | CG6622-PA | 18..667 | 44..697 | 2186 | 58.1 | Plus |
Pkc53E-PB | 679 | CG6622-PB | 18..676 | 44..697 | 2155 | 57.3 | Plus |
Pkc53E-PE | 678 | CG6622-PE | 18..675 | 44..697 | 2146 | 57 | Plus |