Clone BS10029 Report

Search the DGRC for BS10029

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG3345-RA
Protein status:BS10029.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10029.3prime Sequence

940 bp (895 high quality bases) assembled on 2006-04-19

> BS10029.3prime
ATGGTCTAGAAAGCTTCTAGGGTATGCAGAGAGCCAGGGTCTCGCGTTCC
TGCTCGGTGCCGCAGGACACTGGGTGATTCTGGCCCCGGGGATCGATGCC
TGGCTTGAGCATCGTCTGCTGCAGCTCCCAGATGATTTCACACGACTGGA
CGCTCACGGCCAGCTTAAGCACCGACTGATAGTTGAGCGGATTAACCGCA
TAGCTGAGGATACCCCTGGCAATCTGCTCGAACAAATAGTTCCTGTCAAG
CAGAAGGAGCTCCTCTCGTACCTCCATCATACGGTTTTCAAAGTGGCACT
GAATCGCTGCAAATACCAGCTTGTCCAGACCCACCAATAGATCCCGCTTA
AACTTCACCAGGTAGTGCTCTATGAACACGATCTGGTTGCGATTTAGATG
CGGCAGGCGCACCTTGTCCTGTATTACCTGTTCGCCGATCTGGCTGACAA
CCAGAGAGGCTAATGATCCCGCCGGAGTGGCCCGACGTTCGCTGCACGGG
CGGACGTCCACGAACGGATGAATCTCGTAGCTGCCCACGCCAATGGTGCT
GGCTACACCGCTAAATGATACATGGGAGGCGCGCGAGTGGTTTTTCGGCT
GTTTGGCCATCGACGGAGGCACTTCCATGGCTTTGTGGTCTCTGGCGAAT
CCAATGATCTGATAAGCTTTGTAGTGCACATATTTCTTTGCATCGCAGAC
AAAATCCTTAATGCGCGAGATCAGCACCTGCAAGGCACACTCATCCTCGC
TGAGATCGTCGTTTAAACCAGAAATTATGTAGTCCAGTATATATTGTGCC
GCCTTATAGATGGGGTCGTCTGGTGCGAAGCTGAGAGCGGTCTGACCCTC
CATGGCAATGGCTGCATTCAAGGCGTAACAAAGATCACTGTCTAACAATC
CCTCAAAGGTGGCCTGATACTCATCGCAGAATGATGGCTT

BS10029.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3345-PA 2001 CG3345-RA 1078..2001 940..17 4620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3345-RA 2417 CG3345-RA 1182..2105 940..17 4620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 270661..271314 670..17 3270 100 Minus
2L 23513712 2L 270337..270606 940..671 1350 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:15:45 has no hits.

BS10029.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:04 Download gff for BS10029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3345-PA 1078..2001 17..940 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:26 Download gff for BS10029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3345-PA 1078..2001 17..940 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:37 Download gff for BS10029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 1182..2105 17..940 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:58:25 Download gff for BS10029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 1182..2105 17..940 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:58:25 Download gff for BS10029.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 270337..270606 671..940 100 -> Minus
2L 270661..271314 17..670 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:37 Download gff for BS10029.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 270337..270606 671..940 100 -> Minus
arm_2L 270661..271314 17..670 100   Minus

BS10029.5prime Sequence

783 bp (781 high quality bases) assembled on 2006-04-19

> BS10029.5prime
GAAGTTATCAGTCGACATGATCGATATTTTGTCGCTGCCGCGGCGAAATA
AGGTGTCCGGAAACCCGGCCCTGCTAAAGATGATCTCCTACAAGACTGGA
CTACCCATCAACAGTCTACCCGGATGGGAGCTGATCCCTCTTAATTGCAA
GCTGCCAATGCTCAAATGTCCCGGCAATCAGGTCATATTCTCCAAGAACA
AGATCGGACAGGACTTCAAGAGCGGTAAACAGGAGTTTGAGTGTTCCGTT
ACCGAACACATCCCGGAGTACAATCCGCTACACGACTCCAACCTAAAGAC
GTTCTACTCCAATGAGCGTAATCTGAAGCGGTTGAGGGAAAACGGTGAGA
TAACGCAGGACAACGATGTAATATGCAATCTGAAGGACTTCAATCAGCAT
CGCCAGGAGCTGCACAAATCGCAGTTGTACTACATTTTGCAGGCATACAA
GCGGCGCGAGTCGGAGCAATATGATCGAATGCTGATCGCCAACGCGGAGT
CCATCACAAAAAAGGATCACCAGAATCTCGCAGCCCGTCACCAGTGCACT
GAGGAGGTTCTTGCCAGAAAGAAACTACAGGAGCAGGAACGCCACGAAAG
AAAGGTCCATCTGCTGAATATCACATATGAGAAGTTTAAGCGCTTAGAGA
ACCTGGCCACCATGCAGAATATGTTGCTGGAGCACCGCAAGATGCTGACA
AACATGCGTGTAGCTGCCCACATAAGCATGTGCCAGGATTTGATGAGAAA
GCTATTGATCAAACAGAAGAAGCTCTTCCAGTT

BS10029.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3345-PA 2001 CG3345-RA 1..767 17..783 3835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3345-RA 2417 CG3345-RA 105..871 17..783 3835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 269458..270026 215..783 2845 100 Plus
2L 23513712 2L 269192..269389 17..214 990 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:10:04 has no hits.

BS10029.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:05 Download gff for BS10029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3345-PA 1..767 17..783 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:27 Download gff for BS10029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3345-PA 1..767 17..783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:26:35 Download gff for BS10029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 105..871 17..783 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:45:55 Download gff for BS10029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 105..871 17..783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:45:55 Download gff for BS10029.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 269192..269389 17..214 100 -> Plus
2L 269458..270026 215..783 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:26:35 Download gff for BS10029.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 269192..269389 17..214 100 -> Plus
arm_2L 269458..270026 215..783 100   Plus

BS10029.complete Sequence

2033 bp assembled on 2007-11-30

GenBank Submission: FJ636533

> BS10029.complete
GAAGTTATCAGTCGACATGATCGATATTTTGTCGCTGCCGCGGCGAAATA
AGGTGTCCGGAAACCCGGCCCTGCTAAAGATGATCTCCTACAAGACTGGA
CTACCCATCAACAGTCTACCCGGATGGGAGCTGATCCCTCTTAATTGCAA
GCTGCCAATGCTCAAATGTCCCGGCAATCAGGTCATATTCTCCAAGAACA
AGATCGGACAGGACTTCAAGAGCGGTAAACAGGAGTTTGAGTGTTCCGTT
ACCGAACACATCCCGGAGTACAATCCGCTACACGACTCCAACCTAAAGAC
GTTCTACTCCAATGAGCGTAATCTGAAGCGGTTGAGGGAAAACGGTGAGA
TAACGCAGGACAACGATGTAATATGCAATCTGAAGGACTTCAATCAGCAT
CGCCAGGAGCTGCACAAATCGCAGTTGTACTACATTTTGCAGGCATACAA
GCGGCGCGAGTCGGAGCAATATGATCGAATGCTGATCGCCAACGCGGAGT
CCATCACAAAAAAGGATCACCAGAATCTCGCAGCCCGTCACCAGTGCACT
GAGGAGGTTCTTGCCAGAAAGAAACTACAGGAGCAGGAACGCCACGAAAG
AAAGGTCCATCTGCTGAATATCACATATGAGAAGTTTAAGCGCTTAGAGA
ACCTGGCCACCATGCAGAATATGTTGCTGGAGCACCGCAAGATGCTGACA
AACATGCGTGTAGCTGCCCACATAAGCATGTGCCAGGATTTGATGAGAAA
GCTATTGATCAAACAGAAGAAGCTCTTCCAGTTCAAAAAGGATCGGTTCA
ACAAAAACATGCGAATCCTGAGGAAACAACGGCTGGTAAAGAACACTGAG
CACCAGATTCAGTCGTGGAGGAAGCGACTTGATGAGCGAATTGCTAATCA
GCGTAGGATCGAATACCTCCTGCAGGAGGTGGAAAAAGAGCGAGAGGCGT
TTATAGACAGGCACAAGGCTCATTACAGAGAAAAGTGGCAACGGATTCAG
GACGAGATTAAGGAAAGAGCTCAAAAGGCCATCACTGCTCGTCAGCCCAA
AAGAAAGCGCCGCAAGAAGAAGAAGTCGACACTTCAGGAACGCAAGCCAT
CATTCTGCGATGAGTATCAGGCCACCTTTGAGGGATTGTTAGACAGTGAT
CTTTGTTACGCCTTGAATGCAGCCATTGCCATGGAGGGTCAGACCGCTCT
CAGCTTCGCACCAGACGACCCCATCTATAAGGCGGCACAATATATACTGG
ACTACATAATTTCTGGTTTAAACGACGATCTCAGCGAGGATGAGTGTGCC
TTGCAGGTGCTGATCTCGCGCATTAAGGATTTTGTCTGCGATGCAAAGAA
ATATGTGCACTACAAAGCTTATCAGATCATTGGATTCGCCAGAGACCACA
AAGCCATGGAAGTGCCTCCGTCGATGGCCAAACAGCCGAAAAACCACTCG
CGCGCCTCCCATGTATCATTTAGCGGTGTAGCCAGCACCATTGGCGTGGG
CAGCTACGAGATTCATCCGTTCGTGGACGTCCGCCCGTGCAGCGAACGTC
GGGCCACTCCGGCGGGATCATTAGCCTCTCTGGTTGTCAGCCAGATCGGC
GAACAGGTAATACAGGACAAGGTGCGCCTGCCGCATCTAAATCGCAACCA
GATCGTGTTCATAGAGCACTACCTGGTGAAGTTTAAGCGGGATCTATTGG
TGGGTCTGGACAAGCTGGTATTTGCAGCGATTCAGTGCCACTTTGAAAAC
CGTATGATGGAGGTACGAGAGGAGCTCCTTCTGCTTGACAGGAACTATTT
GTTCGAGCAGATTGCCAGGGGTATCCTCAGCTATGCGGTTAATCCGCTCA
ACTATCAGTCGGTGCTTAAGCTGGCCGTGAGCGTCCAGTCGTGTGAAATC
ATCTGGGAGCTGCAGCAGACGATGCTCAAGCCAGGCATCGATCCCCGGGG
CCAGAATCACCCAGTGTCCTGCGGCACCGAGCAGGAACGCGAGACCCTGG
CTCTCTGCATACCCTAGAAGCTTTCTAGACCAT

BS10029.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3345-RA 2001 CG3345-PA 1..2001 17..2017 10005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3345-RA 2417 CG3345-RA 105..2105 17..2017 10005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 269458..270606 215..1363 5745 100 Plus
2L 23513712 2L 270661..271314 1364..2017 3270 100 Plus
2L 23513712 2L 269192..269389 17..214 990 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:28:06 has no hits.

BS10029.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:51 Download gff for BS10029.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 1..2001 17..2017 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:59 Download gff for BS10029.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 105..2105 17..2017 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:47 Download gff for BS10029.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 105..2105 17..2017 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:50 Download gff for BS10029.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 105..2105 17..2017 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:59 Download gff for BS10029.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 105..2105 17..2017 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:59 Download gff for BS10029.complete
Subject Subject Range Query Range Percent Splice Strand
2L 269192..269389 17..214 100 -> Plus
2L 269458..270606 215..1363 100 -> Plus
2L 270661..271314 1364..2017 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:47 Download gff for BS10029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 269192..269389 17..214 100 -> Plus
arm_2L 269458..270606 215..1363 100 -> Plus
arm_2L 270661..271314 1364..2017 100   Plus

BS10029.pep Sequence

Translation from 16 to 2016

> BS10029.pep
MIDILSLPRRNKVSGNPALLKMISYKTGLPINSLPGWELIPLNCKLPMLK
CPGNQVIFSKNKIGQDFKSGKQEFECSVTEHIPEYNPLHDSNLKTFYSNE
RNLKRLRENGEITQDNDVICNLKDFNQHRQELHKSQLYYILQAYKRRESE
QYDRMLIANAESITKKDHQNLAARHQCTEEVLARKKLQEQERHERKVHLL
NITYEKFKRLENLATMQNMLLEHRKMLTNMRVAAHISMCQDLMRKLLIKQ
KKLFQFKKDRFNKNMRILRKQRLVKNTEHQIQSWRKRLDERIANQRRIEY
LLQEVEKEREAFIDRHKAHYREKWQRIQDEIKERAQKAITARQPKRKRRK
KKKSTLQERKPSFCDEYQATFEGLLDSDLCYALNAAIAMEGQTALSFAPD
DPIYKAAQYILDYIISGLNDDLSEDECALQVLISRIKDFVCDAKKYVHYK
AYQIIGFARDHKAMEVPPSMAKQPKNHSRASHVSFSGVASTIGVGSYEIH
PFVDVRPCSERRATPAGSLASLVVSQIGEQVIQDKVRLPHLNRNQIVFIE
HYLVKFKRDLLVGLDKLVFAAIQCHFENRMMEVREELLLLDRNYLFEQIA
RGILSYAVNPLNYQSVLKLAVSVQSCEIIWELQQTMLKPGIDPRGQNHPV
SCGTEQERETLALCIP*

BS10029.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3345-PA 666 CG3345-PA 1..666 1..666 3456 100 Plus