Clone BS10030 Report

Search the DGRC for BS10030

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptRh5-RA
Protein status:BS10030.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10030.3prime Sequence

899 bp (805 high quality bases) assembled on 2006-04-19

> BS10030.3prime
ATGGTCTAGAAAGCTTTTAGTTTTGCACGCTGAGTGCCAAAGTATCGCCG
CTGACACTGGCCACACTCTCCTGGCCGCCGGATGTTCCGGATGTGGCATG
CTTCTCGCGGATGCCCAGCCACGGCAGACGGCGCTCCAGCTCCAGACGAT
ACTTGGGATGACTGGTGGCATAGACCCAGGGATCCAGACAGGACACCGAC
TTGCAGGCCAGGCACGGAAGCATTGAGACGAAGGGCGTGATTAGCTGCTG
CTCCCCGAAGCATCCGATAAGTGCCACCACGGAGTAGGGTGTCCAGGCCA
GAATGAAGAGCATGTATATTATGAGGGCCGCCTTGGCGATCCGGAGTTCC
ACACTCATGTTATCCGCATTGGCGTTGGCCGACAGCGACTTCACGTTCAT
TTTCTTGGCCTGCTCGGCCAGCATCTTCTCGTGCACGCGGACGTGGGTGA
AGAGCTTGTAGTAGGACACCAGGATCATGGTCATCGGTATCACGTAGGAC
CACACGAAAATCGTGCGCACAAACAGTCGGTTTTCGTCCGTGTTGGTCAG
GTAATCGAAGGAGCAGGTGGTCAGGAAGCCCTCCGGCTGGTAACGTCCCC
AGATCTGGAACAATGGCAGCACGGAGAACGGAGTGGCCCACAACCAGGTG
AAGAGTATCAGCAGTACAATCTGTCCGTAGCTCANACGTCCGTCTATTGG
ATTGGATATTGTCTTATAGCGATCGAATGCTATGAAGGCATTCGTTATGG
AGGCTCCCATCCCGGAGATGCCTCCGTTCAAAGCGTATATATCGCAGCCC
AGATCTCCGCCCACTATATAGCCAACTGTGGCGTTGATAAGATAATGCGG
CATATTGGTGCACATGAACAGATCGAAAATGGCCAGGTTGAGAATCAAT

BS10030.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5279-PA 1149 Rh5-RA 267..1149 899..17 4396 99.8 Minus
CG9668-PA 1137 Rh4-RA 757..789 415..383 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-RB 1572 CG5279-RB 563..1445 899..17 4404 99.9 Minus
Rh5-RA 1347 CG5279-RA 338..1220 899..17 4404 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12009139..12009705 583..17 2835 100 Minus
2L 23513712 2L 12008773..12009089 899..583 1574 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 13:15:36 has no hits.

BS10030.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:06 Download gff for BS10030.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-PA 267..1149 17..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:28 Download gff for BS10030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5279-PA 267..1149 17..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:35 Download gff for BS10030.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 338..1220 17..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:57:26 Download gff for BS10030.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 338..1220 17..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:57:26 Download gff for BS10030.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12008773..12009089 583..899 99 -> Minus
2L 12009140..12009705 17..582 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:35 Download gff for BS10030.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12008773..12009089 583..899 99 -> Minus
arm_2L 12009140..12009705 17..582 100   Minus

BS10030.5prime Sequence

885 bp (845 high quality bases) assembled on 2006-04-19

> BS10030.5prime
GAAGTTATCAGTCGACATGCACATCAACGGCCCAAGTGGGCCACAGGCCT
ATGTGAACGATAGCTTAGGAGATGGCAGCGTCTTTCCAATGGGACATGGA
TATCCGGCGGAGTACCAGCACATGGTGCACGCCCACTGGCGGGGATTCCG
TGAGGCACCTATCTACTATCACGCCGGTTTCTACATTGCCTTTATCGTCC
TCATGCTGTCGAGTATCTTTGGAAATGGACTGGTCATCTGGATATTCTCG
ACTTCGAAATCCCTGCGTACTCCATCTAACCTATTGATTCTCAACCTGGC
CATTTTCGATCTGTTCATGTGCACCAATATGCCGCATTATCTTATCAACG
CCACAGTTGGCTATATAGTGGGCGGAGATCTGGGCTGCGATATATACGCT
TTGAACGGAGGCATCTCCGGGATGGGAGCCTCCATAACGAATGCCTTCAT
AGCATTCGATCGCTATAAGACAATATCCAATCCAATAGACGGACGTTTGA
GCTACGGACAGATTGTACTGCTGATACTCTTCACCTGGTTGTGGGCCACT
CCGTTCTCCGTGCTGCCATTGTTCCAGATCTGGGGACGTTACCAGCCGGA
GGGCTTCCTGACCACCTGCTCCTTCGATTACCTGACCAACACGGACGAAA
ACCGACTGTTTGTGCGCACGATTTTCGTGTGGTCCTACGTGATACCGATG
ACCATGATCCTGGTGTCCTACTACAAGCTCTTCACCCACGTCCGCGTGCA
CGAGAAGATGCTGGCCGAGCAGGCCAAGAAAATGAACGTGAAGTCGCTGT
CGGCCAACGCCAATGCGGATAACATGAGTGTGGAACTCCGGATCGCCAAG
GCGGGCCTCATAATATACATGCTCTTCATTCTGGC

BS10030.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5279-PA 1149 Rh5-RA 1..869 17..885 4320 99.8 Plus
CG9668-PA 1137 Rh4-RA 757..789 767..799 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-RB 1572 CG5279-RB 297..1165 17..885 4330 99.9 Plus
Rh5-RA 1347 CG5279-RA 72..940 17..885 4330 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12008743..12009089 253..599 1735 100 Plus
2L 23513712 2L 12009139..12009425 599..885 1420 99.7 Plus
2L 23513712 2L 12008449..12008684 17..252 1180 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:22:41 has no hits.

BS10030.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:07 Download gff for BS10030.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:29 Download gff for BS10030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5279-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:24 Download gff for BS10030.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 68..940 9..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:06 Download gff for BS10030.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 68..940 9..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:06 Download gff for BS10030.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12008445..12008684 9..252 98 -> Plus
2L 12008743..12009089 253..599 100 -> Plus
2L 12009140..12009425 600..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:24 Download gff for BS10030.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12008445..12008684 9..252 98 -> Plus
arm_2L 12008743..12009089 253..599 100 -> Plus
arm_2L 12009140..12009425 600..885 99   Plus

BS10030.complete Sequence

1181 bp (1181 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636534

> BS10030.complete
GAAGTTATCAGTCGACATGCACATCAACGGCCCAAGTGGGCCACAGGCCT
ATGTGAACGATAGCTTAGGAGATGGCAGCGTCTTTCCAATGGGACATGGA
TATCCGGCGGAGTACCAGCACATGGTGCACGCCCACTGGCGGGGATTCCG
TGAGGCACCTATCTACTATCACGCCGGTTTCTACATTGCCTTTATCGTCC
TCATGCTGTCGAGTATCTTTGGAAATGGACTGGTCATCTGGATATTCTCG
ACTTCGAAATCCCTGCGTACTCCATCTAACCTATTGATTCTCAACCTGGC
CATTTTCGATCTGTTCATGTGCACCAATATGCCGCATTATCTTATCAACG
CCACAGTTGGCTATATAGTGGGCGGAGATCTGGGCTGCGATATATACGCT
TTGAACGGAGGCATCTCCGGGATGGGAGCCTCCATAACGAATGCCTTCAT
AGCATTCGATCGCTATAAGACAATATCCAATCCAATAGACGGACGTTTGA
GCTACGGACAGATTGTACTGCTGATACTCTTCACCTGGTTGTGGGCCACT
CCGTTCTCCGTGCTGCCATTGTTCCAGATCTGGGGACGTTACCAGCCGGA
GGGCTTCCTGACCACCTGCTCCTTCGATTACCTGACCAACACGGACGAAA
ACCGACTGTTTGTGCGCACGATTTTCGTGTGGTCCTACGTGATACCGATG
ACCATGATCCTGGTGTCCTACTACAAGCTCTTCACCCACGTCCGCGTGCA
CGAGAAGATGCTGGCCGAGCAGGCCAAGAAAATGAACGTGAAGTCGCTGT
CGGCCAACGCCAATGCGGATAACATGAGTGTGGAACTCCGGATCGCCAAG
GCGGCCCTCATAATATACATGCTCTTCATTCTGGCCTGGACACCCTACTC
CGTGGTGGCACTTATCGGATGCTTCGGGGAGCAGCAGCTAATCACGCCCT
TCGTCTCAATGCTTCCGTGCCTGGCCTGCAAGTCGGTGTCCTGTCTGGAT
CCCTGGGTCTATGCCACCAGTCATCCCAAGTATCGTCTGGAGCTGGAGCG
CCGTCTGCCGTGGCTGGGCATCCGCGAGAAGCATGCCACATCCGGAACAT
CCGGCGGCCAGGAGAGTGTGGCCAGTGTCAGCGGCGATACTTTGGCACTC
AGCGTGCAAAACTAAAAGCTTTCTAGACCAT

BS10030.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-RB 1149 CG5279-PB 1..1149 17..1165 5745 100 Plus
Rh5-RA 1149 CG5279-PA 1..1149 17..1165 5745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-RB 1572 CG5279-RB 297..1445 17..1165 5745 100 Plus
Rh5-RA 1347 CG5279-RA 72..1220 17..1165 5745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12009139..12009705 599..1165 2835 100 Plus
2L 23513712 2L 12008743..12009089 253..599 1735 100 Plus
2L 23513712 2L 12008449..12008684 17..252 1180 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:37:30 has no hits.

BS10030.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:41 Download gff for BS10030.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 1..1149 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:27 Download gff for BS10030.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 70..1222 9..1165 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:51 Download gff for BS10030.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 72..1212 17..1157 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:41 Download gff for BS10030.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 70..1222 9..1165 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:52 Download gff for BS10030.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 72..1212 17..1157 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:52 Download gff for BS10030.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12008449..12008684 17..252 100 -> Plus
2L 12008743..12009089 253..599 100 -> Plus
2L 12009140..12009697 600..1157 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:51 Download gff for BS10030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12008449..12008684 17..252 100 -> Plus
arm_2L 12008743..12009089 253..599 100 -> Plus
arm_2L 12009140..12009697 600..1157 100   Plus

BS10030.pep Sequence

Translation from 16 to 1164

> BS10030.pep
MHINGPSGPQAYVNDSLGDGSVFPMGHGYPAEYQHMVHAHWRGFREAPIY
YHAGFYIAFIVLMLSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLF
MCTNMPHYLINATVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRY
KTISNPIDGRLSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTT
CSFDYLTNTDENRLFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLA
EQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALI
GCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYRLELERRLPWL
GIREKHATSGTSGGQESVASVSGDTLALSVQN*

BS10030.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-PB 382 CG5279-PB 1..382 1..382 2024 100 Plus
Rh5-PA 382 CG5279-PA 1..382 1..382 2024 100 Plus
Rh4-PA 378 CG9668-PA 18..357 16..355 879 48.2 Plus
Rh3-PA 383 CG10888-PA 31..376 25..366 839 45.4 Plus
Rh2-PA 381 CG16740-PA 16..352 7..348 526 37.8 Plus