Clone Sequence Records
BS10030.3prime Sequence
899 bp (805 high quality bases) assembled on 2006-04-19
> BS10030.3prime
ATGGTCTAGAAAGCTTTTAGTTTTGCACGCTGAGTGCCAAAGTATCGCCG
CTGACACTGGCCACACTCTCCTGGCCGCCGGATGTTCCGGATGTGGCATG
CTTCTCGCGGATGCCCAGCCACGGCAGACGGCGCTCCAGCTCCAGACGAT
ACTTGGGATGACTGGTGGCATAGACCCAGGGATCCAGACAGGACACCGAC
TTGCAGGCCAGGCACGGAAGCATTGAGACGAAGGGCGTGATTAGCTGCTG
CTCCCCGAAGCATCCGATAAGTGCCACCACGGAGTAGGGTGTCCAGGCCA
GAATGAAGAGCATGTATATTATGAGGGCCGCCTTGGCGATCCGGAGTTCC
ACACTCATGTTATCCGCATTGGCGTTGGCCGACAGCGACTTCACGTTCAT
TTTCTTGGCCTGCTCGGCCAGCATCTTCTCGTGCACGCGGACGTGGGTGA
AGAGCTTGTAGTAGGACACCAGGATCATGGTCATCGGTATCACGTAGGAC
CACACGAAAATCGTGCGCACAAACAGTCGGTTTTCGTCCGTGTTGGTCAG
GTAATCGAAGGAGCAGGTGGTCAGGAAGCCCTCCGGCTGGTAACGTCCCC
AGATCTGGAACAATGGCAGCACGGAGAACGGAGTGGCCCACAACCAGGTG
AAGAGTATCAGCAGTACAATCTGTCCGTAGCTCANACGTCCGTCTATTGG
ATTGGATATTGTCTTATAGCGATCGAATGCTATGAAGGCATTCGTTATGG
AGGCTCCCATCCCGGAGATGCCTCCGTTCAAAGCGTATATATCGCAGCCC
AGATCTCCGCCCACTATATAGCCAACTGTGGCGTTGATAAGATAATGCGG
CATATTGGTGCACATGAACAGATCGAAAATGGCCAGGTTGAGAATCAAT
BS10030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5279-PA | 1149 | Rh5-RA | 267..1149 | 899..17 | 4396 | 99.8 | Minus |
CG9668-PA | 1137 | Rh4-RA | 757..789 | 415..383 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh5-RB | 1572 | CG5279-RB | 563..1445 | 899..17 | 4404 | 99.9 | Minus |
Rh5-RA | 1347 | CG5279-RA | 338..1220 | 899..17 | 4404 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12009139..12009705 | 583..17 | 2835 | 100 | Minus |
2L | 23513712 | 2L | 12008773..12009089 | 899..583 | 1574 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:15:36 has no hits.
BS10030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:06 Download gff for
BS10030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-PA | 267..1149 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:28 Download gff for
BS10030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5279-PA | 267..1149 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:35 Download gff for
BS10030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 338..1220 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:57:26 Download gff for
BS10030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 338..1220 | 17..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:57:26 Download gff for
BS10030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12008773..12009089 | 583..899 | 99 | -> | Minus |
2L | 12009140..12009705 | 17..582 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:35 Download gff for
BS10030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12008773..12009089 | 583..899 | 99 | -> | Minus |
arm_2L | 12009140..12009705 | 17..582 | 100 | | Minus |
BS10030.5prime Sequence
885 bp (845 high quality bases) assembled on 2006-04-19
> BS10030.5prime
GAAGTTATCAGTCGACATGCACATCAACGGCCCAAGTGGGCCACAGGCCT
ATGTGAACGATAGCTTAGGAGATGGCAGCGTCTTTCCAATGGGACATGGA
TATCCGGCGGAGTACCAGCACATGGTGCACGCCCACTGGCGGGGATTCCG
TGAGGCACCTATCTACTATCACGCCGGTTTCTACATTGCCTTTATCGTCC
TCATGCTGTCGAGTATCTTTGGAAATGGACTGGTCATCTGGATATTCTCG
ACTTCGAAATCCCTGCGTACTCCATCTAACCTATTGATTCTCAACCTGGC
CATTTTCGATCTGTTCATGTGCACCAATATGCCGCATTATCTTATCAACG
CCACAGTTGGCTATATAGTGGGCGGAGATCTGGGCTGCGATATATACGCT
TTGAACGGAGGCATCTCCGGGATGGGAGCCTCCATAACGAATGCCTTCAT
AGCATTCGATCGCTATAAGACAATATCCAATCCAATAGACGGACGTTTGA
GCTACGGACAGATTGTACTGCTGATACTCTTCACCTGGTTGTGGGCCACT
CCGTTCTCCGTGCTGCCATTGTTCCAGATCTGGGGACGTTACCAGCCGGA
GGGCTTCCTGACCACCTGCTCCTTCGATTACCTGACCAACACGGACGAAA
ACCGACTGTTTGTGCGCACGATTTTCGTGTGGTCCTACGTGATACCGATG
ACCATGATCCTGGTGTCCTACTACAAGCTCTTCACCCACGTCCGCGTGCA
CGAGAAGATGCTGGCCGAGCAGGCCAAGAAAATGAACGTGAAGTCGCTGT
CGGCCAACGCCAATGCGGATAACATGAGTGTGGAACTCCGGATCGCCAAG
GCGGGCCTCATAATATACATGCTCTTCATTCTGGC
BS10030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5279-PA | 1149 | Rh5-RA | 1..869 | 17..885 | 4320 | 99.8 | Plus |
CG9668-PA | 1137 | Rh4-RA | 757..789 | 767..799 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh5-RB | 1572 | CG5279-RB | 297..1165 | 17..885 | 4330 | 99.9 | Plus |
Rh5-RA | 1347 | CG5279-RA | 72..940 | 17..885 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12008743..12009089 | 253..599 | 1735 | 100 | Plus |
2L | 23513712 | 2L | 12009139..12009425 | 599..885 | 1420 | 99.7 | Plus |
2L | 23513712 | 2L | 12008449..12008684 | 17..252 | 1180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:22:41 has no hits.
BS10030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:07 Download gff for
BS10030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:29 Download gff for
BS10030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5279-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:38:24 Download gff for
BS10030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 68..940 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:06 Download gff for
BS10030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 68..940 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:06 Download gff for
BS10030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12008445..12008684 | 9..252 | 98 | -> | Plus |
2L | 12008743..12009089 | 253..599 | 100 | -> | Plus |
2L | 12009140..12009425 | 600..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:38:24 Download gff for
BS10030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12008445..12008684 | 9..252 | 98 | -> | Plus |
arm_2L | 12008743..12009089 | 253..599 | 100 | -> | Plus |
arm_2L | 12009140..12009425 | 600..885 | 99 | | Plus |
BS10030.complete Sequence
1181 bp (1181 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636534
> BS10030.complete
GAAGTTATCAGTCGACATGCACATCAACGGCCCAAGTGGGCCACAGGCCT
ATGTGAACGATAGCTTAGGAGATGGCAGCGTCTTTCCAATGGGACATGGA
TATCCGGCGGAGTACCAGCACATGGTGCACGCCCACTGGCGGGGATTCCG
TGAGGCACCTATCTACTATCACGCCGGTTTCTACATTGCCTTTATCGTCC
TCATGCTGTCGAGTATCTTTGGAAATGGACTGGTCATCTGGATATTCTCG
ACTTCGAAATCCCTGCGTACTCCATCTAACCTATTGATTCTCAACCTGGC
CATTTTCGATCTGTTCATGTGCACCAATATGCCGCATTATCTTATCAACG
CCACAGTTGGCTATATAGTGGGCGGAGATCTGGGCTGCGATATATACGCT
TTGAACGGAGGCATCTCCGGGATGGGAGCCTCCATAACGAATGCCTTCAT
AGCATTCGATCGCTATAAGACAATATCCAATCCAATAGACGGACGTTTGA
GCTACGGACAGATTGTACTGCTGATACTCTTCACCTGGTTGTGGGCCACT
CCGTTCTCCGTGCTGCCATTGTTCCAGATCTGGGGACGTTACCAGCCGGA
GGGCTTCCTGACCACCTGCTCCTTCGATTACCTGACCAACACGGACGAAA
ACCGACTGTTTGTGCGCACGATTTTCGTGTGGTCCTACGTGATACCGATG
ACCATGATCCTGGTGTCCTACTACAAGCTCTTCACCCACGTCCGCGTGCA
CGAGAAGATGCTGGCCGAGCAGGCCAAGAAAATGAACGTGAAGTCGCTGT
CGGCCAACGCCAATGCGGATAACATGAGTGTGGAACTCCGGATCGCCAAG
GCGGCCCTCATAATATACATGCTCTTCATTCTGGCCTGGACACCCTACTC
CGTGGTGGCACTTATCGGATGCTTCGGGGAGCAGCAGCTAATCACGCCCT
TCGTCTCAATGCTTCCGTGCCTGGCCTGCAAGTCGGTGTCCTGTCTGGAT
CCCTGGGTCTATGCCACCAGTCATCCCAAGTATCGTCTGGAGCTGGAGCG
CCGTCTGCCGTGGCTGGGCATCCGCGAGAAGCATGCCACATCCGGAACAT
CCGGCGGCCAGGAGAGTGTGGCCAGTGTCAGCGGCGATACTTTGGCACTC
AGCGTGCAAAACTAAAAGCTTTCTAGACCAT
BS10030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh5-RB | 1149 | CG5279-PB | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Rh5-RA | 1149 | CG5279-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh5-RB | 1572 | CG5279-RB | 297..1445 | 17..1165 | 5745 | 100 | Plus |
Rh5-RA | 1347 | CG5279-RA | 72..1220 | 17..1165 | 5745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12009139..12009705 | 599..1165 | 2835 | 100 | Plus |
2L | 23513712 | 2L | 12008743..12009089 | 253..599 | 1735 | 100 | Plus |
2L | 23513712 | 2L | 12008449..12008684 | 17..252 | 1180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:37:30 has no hits.
BS10030.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:41 Download gff for
BS10030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 1..1149 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:27 Download gff for
BS10030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 70..1222 | 9..1165 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:51 Download gff for
BS10030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 72..1212 | 17..1157 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:41 Download gff for
BS10030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 70..1222 | 9..1165 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:52 Download gff for
BS10030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh5-RA | 72..1212 | 17..1157 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:52 Download gff for
BS10030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12008449..12008684 | 17..252 | 100 | -> | Plus |
2L | 12008743..12009089 | 253..599 | 100 | -> | Plus |
2L | 12009140..12009697 | 600..1157 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:51 Download gff for
BS10030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12008449..12008684 | 17..252 | 100 | -> | Plus |
arm_2L | 12008743..12009089 | 253..599 | 100 | -> | Plus |
arm_2L | 12009140..12009697 | 600..1157 | 100 | | Plus |
BS10030.pep Sequence
Translation from 16 to 1164
> BS10030.pep
MHINGPSGPQAYVNDSLGDGSVFPMGHGYPAEYQHMVHAHWRGFREAPIY
YHAGFYIAFIVLMLSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLF
MCTNMPHYLINATVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRY
KTISNPIDGRLSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTT
CSFDYLTNTDENRLFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLA
EQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALI
GCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYRLELERRLPWL
GIREKHATSGTSGGQESVASVSGDTLALSVQN*
BS10030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh5-PB | 382 | CG5279-PB | 1..382 | 1..382 | 2024 | 100 | Plus |
Rh5-PA | 382 | CG5279-PA | 1..382 | 1..382 | 2024 | 100 | Plus |
Rh4-PA | 378 | CG9668-PA | 18..357 | 16..355 | 879 | 48.2 | Plus |
Rh3-PA | 383 | CG10888-PA | 31..376 | 25..366 | 839 | 45.4 | Plus |
Rh2-PA | 381 | CG16740-PA | 16..352 | 7..348 | 526 | 37.8 | Plus |