Clone Sequence Records
BS10033.3prime Sequence
903 bp (862 high quality bases) assembled on 2006-04-19
> BS10033.3prime
ATGGTCTAGAAAGCTTCTAGGAACTCGAGATGGCCGCTGGTGCCGTGCTG
CCGTTGCTCAGCCTCGCTGGGGAGGTGGTGACGGTCGTCTGGAGGGCCGG
CTTCTGCTCATCGTCCTCCGGATTGTCCCAGTACTGACGCTCACCGGATC
CGAAGATGTTGTAGAAGGTACCGCAAATGATGTACACAAAGGCAGCGATG
AAGAACACGATCTGCCACTGACCCATCATGGGCTTGCTGGGATCAGAAAT
GAGGTGACCTGCAGCAATGGGCGCTAAGAGACCAGCCAAATTGGCAGAGC
AGTTAGTGATCGACATTAGGAAGCCGGCGAAACGCGGTGTGAGGTCCAAG
TGGTTGATCTTGAAGCCGGAGTAGATACCTCCATTAAGACCCACTCCGAT
GGTGAGGATGGCCAAGGTCAGTGCTCTGTCGCAGCCCGTGTAGGAGGCGG
CGATTAGGGCGACTCCCGGTCCATACTGGCCAATACTGTTGATCAGCTTC
CTGGTGGCCGTGTGCGAGAATCTCTTCGAGCTAATCATCCAATCGGCGAC
CACCGAGATGAACATGGAGAAGAGCCACATGGCCAAGTAGGGCAGGGAGC
TGAGCAGACCGTTCGACTTCAGGGAGAAGCGGAGCACCTGCTTCATGTAG
GTGGGCAGCTCGGTCATCAGAGTCTCATAGCCGTAGTTGTGACCCATGTG
GGCGAACAGAATGGCGTAGAAGGGCAGCGACTTGATGATAGCCTTGAAGG
GAATGGGAGGGCTCTTAACAACATCAGTTCCCCAGAGGGAATCGTTAATG
TACTTCTTCTCGCGCTCATCAATAGTGGGATGCGAAGAGGGATCCTCGTG
CACGAAGATCAGGAAGGCGATGGACCAGACGGTACCCACAATTCCAAACA
CAT
BS10033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8098-PA | 1551 | Picot-RA | 665..1551 | 903..17 | 4435 | 100 | Minus |
CG8098-PB | 1590 | Picot-RB | 704..1590 | 903..17 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Picot-RD | 2870 | CG8098-RD | 1550..2436 | 903..17 | 4435 | 100 | Minus |
Picot-RC | 2367 | CG8098-RC | 1047..1933 | 903..17 | 4435 | 100 | Minus |
Picot-RB | 2333 | CG8098-RB | 1013..1899 | 903..17 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:19:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16656036..16656568 | 233..765 | 2665 | 100 | Plus |
2R | 25286936 | 2R | 16655757..16655974 | 17..234 | 1090 | 100 | Plus |
2R | 25286936 | 2R | 16656631..16656770 | 764..903 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:19:50 has no hits.
BS10033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:12 Download gff for
BS10033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Picot-PB | 704..1590 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:38 Download gff for
BS10033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8098-PB | 704..1590 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:20 Download gff for
BS10033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Picot-RB | 1013..1903 | 12..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:30 Download gff for
BS10033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Picot-RB | 1013..1903 | 12..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:30 Download gff for
BS10033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16656631..16656770 | 764..903 | 100 | | Plus |
2R | 16655753..16655972 | 12..232 | 99 | <- | Plus |
2R | 16656036..16656566 | 233..763 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:20 Download gff for
BS10033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12543258..12543477 | 12..232 | 99 | <- | Plus |
arm_2R | 12543541..12544071 | 233..763 | 100 | <- | Plus |
arm_2R | 12544136..12544275 | 764..903 | 100 | | Plus |
BS10033.5prime Sequence
930 bp (866 high quality bases) assembled on 2006-04-19
> BS10033.5prime
GAAGTTATCAGTCGACATGTCAGCGTCGAAGGAGGCGATTTGCGGGAGCA
CGGAGAAGGATCTGGAGAAGCCGGCATTGGGATGCTTTGCCACCCGGTAC
TTTGTGACCTTTATGCTTTTCCTGGGCATGGCCAATGCCTATGTGATGCG
CACCAACATGTCGGTGGCCATTGTGGCCATGGTGAACCACACGGCCATCA
AGTCTGGAGAGGCAGAGGAGTACGATGATGAGTGCGGAGATCGGGATATT
CCTATTGATGACTCTCAGGATGGCGAGTTCGCCTGGAGCTCAGCTCTGCA
GGGCTACATCTTGTCGTCCTTCTTCTATGGCTATGTCATCACCCAGATTC
CCTTTGGCATATTGGCCAAGAAGTACGGTTCCCTGCGCTTCCTCGGCTAC
GGCATGTTGATCAACTCCGTGTTTGCCTTCCTGGTTCCGGTGGCTGCCCG
CGGTGGAGGTGTTTGGGGTCTGTGCGCCGTGCGTTTCATCCAAGGTCTAG
GTGAGGGTCCCATCGTGCCCTGCACCCACGCCATGTTGGCCAAATGGATT
CCGCCCAACGAAAGGTCACGAATGGGTGCCGCCGTGTATGCGGGTGCACA
GTTTGGAACCATCATCTCTATGCCACTTTCCGGCCTGCTGGCTGAATACG
GATTCGATGGCGGCTGGCCGTCGATCTTCTATGTGTTTGGAATTGTGGGT
ACCGTCTGGTCCATCGCCTTCCTGATCTTCGTGCACGAGGATCCCTCTTC
GCATCCCACTATTGATGAGCGCGAGAAGAAGTACATTAACGATTCCCTCT
GGGGAACTGATGTTGTTAAGAGCCCTCCCATTCCCTTCAAGGCTATCATC
AAGTCGCTGCCCTTCTACGCCATTCTGTTCGCCCACATGGGTCACAACTA
CGGCTATGAGACTCTGATGACCGAGCTGCC
BS10033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8098-PA | 1551 | Picot-RA | 1..914 | 17..930 | 4570 | 100 | Plus |
CG8098-PB | 1590 | Picot-RB | 104..953 | 81..930 | 4250 | 100 | Plus |
CG6978-PA | 1440 | CG6978-RA | 154..221 | 128..195 | 190 | 91.1 | Plus |
CG4330-PA | 1680 | CG4330-RA | 266..302 | 159..195 | 160 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Picot-RD | 2870 | CG8098-RD | 886..1799 | 17..930 | 4570 | 100 | Plus |
Picot-RC | 2367 | CG8098-RC | 383..1296 | 17..930 | 4570 | 100 | Plus |
Picot-RA | 2735 | CG8098-RA | 751..1664 | 17..930 | 4570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16656631..16657194 | 820..257 | 2820 | 100 | Minus |
2R | 25286936 | 2R | 16657263..16657440 | 257..80 | 890 | 100 | Minus |
2R | 25286936 | 2R | 16656457..16656568 | 930..819 | 560 | 100 | Minus |
X | 23542271 | X | 4784486..4784872 | 296..682 | 465 | 74.7 | Plus |
2R | 25286936 | 2R | 16663514..16663578 | 81..17 | 325 | 100 | Minus |
X | 23542271 | X | 4784336..4784422 | 113..199 | 270 | 87.4 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:13:24 has no hits.
BS10033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:13 Download gff for
BS10033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Picot-PA | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:39 Download gff for
BS10033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8098-PA | 1..914 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:59:19 Download gff for
BS10033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Picot-RA | 744..1664 | 8..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:34:44 Download gff for
BS10033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Picot-RA | 744..1664 | 8..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:34:44 Download gff for
BS10033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16656457..16656566 | 821..930 | 100 | <- | Minus |
2R | 16656631..16657194 | 257..820 | 100 | <- | Minus |
2R | 16657264..16657439 | 81..256 | 100 | <- | Minus |
2R | 16663515..16663585 | 8..80 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:59:19 Download gff for
BS10033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12543962..12544071 | 821..930 | 100 | <- | Minus |
arm_2R | 12544136..12544699 | 257..820 | 100 | <- | Minus |
arm_2R | 12544769..12544944 | 81..256 | 100 | <- | Minus |
arm_2R | 12551020..12551090 | 8..80 | 94 | | Minus |
BS10033.complete Sequence
1583 bp (1583 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636535
> BS10033.complete
GAAGTTATCAGTCGACATGTCAGCGTCGAAGGAGGCGATTTGCGGGAGCA
CGGAGAAGGATCTGGAGAAGCCGGCATTGGGATGCTTTGCCACCCGGTAC
TTTGTGACCTTTATGCTTTTCCTGGGCATGGCCAATGCCTATGTGATGCG
CACCAACATGTCGGTGGCCATTGTGGCCATGGTGAACCACACGGCCATCA
AGTCTGGAGAGGCAGAGGAGTACGATGATGAGTGCGGAGATCGGGATATT
CCTATTGATGACTCTCAGGATGGCGAGTTCGCCTGGAGCTCAGCTCTGCA
GGGCTACATCTTGTCGTCCTTCTTCTATGGCTATGTCATCACCCAGATTC
CCTTTGGCATATTGGCCAAGAAGTACGGTTCCCTGCGCTTCCTCGGCTAC
GGCATGTTGATCAACTCCGTGTTTGCCTTCCTGGTTCCGGTGGCTGCCCG
CGGTGGAGGTGTTTGGGGTCTGTGCGCCGTGCGTTTCATCCAAGGTCTAG
GTGAGGGTCCCATCGTGCCCTGCACCCACGCCATGTTGGCCAAATGGATT
CCGCCCAACGAAAGGTCACGAATGGGTGCCGCCGTGTATGCGGGTGCACA
GTTTGGAACCATCATCTCTATGCCACTTTCCGGCCTGCTGGCTGAATACG
GATTCGATGGCGGCTGGCCGTCGATCTTCTATGTGTTTGGAATTGTGGGT
ACCGTCTGGTCCATCGCCTTCCTGATCTTCGTGCACGAGGATCCCTCTTC
GCATCCCACTATTGATGAGCGCGAGAAGAAGTACATTAACGATTCCCTCT
GGGGAACTGATGTTGTTAAGAGCCCTCCCATTCCCTTCAAGGCTATCATC
AAGTCGCTGCCCTTCTACGCCATTCTGTTCGCCCACATGGGTCACAACTA
CGGCTATGAGACTCTGATGACCGAGCTGCCCACCTACATGAAGCAGGTGC
TCCGCTTCTCCCTGAAGTCGAACGGTCTGCTCAGCTCCCTGCCCTACTTG
GCCATGTGGCTCTTCTCCATGTTCATCTCGGTGGTCGCCGATTGGATGAT
TAGCTCGAAGAGATTCTCGCACACGGCCACCAGGAAGCTGATCAACAGTA
TTGGCCAGTATGGACCGGGAGTCGCCCTAATCGCCGCCTCCTACACGGGC
TGCGACAGAGCACTGACCTTGGCCATCCTCACCATCGGAGTGGGTCTTAA
TGGAGGTATCTACTCCGGCTTCAAGATCAACCACTTGGACCTCACACCGC
GTTTCGCCGGCTTCCTAATGTCGATCACTAACTGCTCTGCCAATTTGGCT
GGTCTCTTAGCGCCCATTGCTGCAGGTCACCTCATTTCTGATCCCAGCAA
GCCCATGATGGGTCAGTGGCAGATCGTGTTCTTCATCGCTGCCTTTGTGT
ACATCATTTGCGGTACCTTCTACAACATCTTCGGATCCGGTGAGCGTCAG
TACTGGGACAATCCGGAGGACGATGAGCAGAAGCCGGCCCTCCAGACGAC
CGTCACCACCTCCCCAGCGAGGCTGAGCAACGGCAGCACGGCACCAGCGG
CCATCTCGAGTTCCTAGAAGCTTTCTAGACCAT
BS10033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Picot-RD | 1551 | CG8098-PD | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Picot-RC | 1551 | CG8098-PC | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Picot-RA | 1551 | CG8098-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Picot-RD | 2870 | CG8098-RD | 886..2436 | 17..1567 | 7755 | 100 | Plus |
Picot-RC | 2367 | CG8098-RC | 383..1933 | 17..1567 | 7755 | 100 | Plus |
Picot-RA | 2735 | CG8098-RA | 751..2301 | 17..1567 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16656631..16657194 | 820..257 | 2820 | 100 | Minus |
2R | 25286936 | 2R | 16656036..16656568 | 1351..819 | 2665 | 100 | Minus |
2R | 25286936 | 2R | 16655757..16655974 | 1567..1350 | 1090 | 100 | Minus |
2R | 25286936 | 2R | 16657263..16657440 | 257..80 | 890 | 100 | Minus |
X | 23542271 | X | 4784486..4784872 | 296..682 | 465 | 74.7 | Plus |
2R | 25286936 | 2R | 16663514..16663578 | 81..17 | 325 | 100 | Minus |
X | 23542271 | X | 4784336..4784422 | 113..199 | 270 | 87.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:32:31 has no hits.
BS10033.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:28 Download gff for
BS10033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Picot-RA | 1..1551 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:09 Download gff for
BS10033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Picot-RA | 747..2308 | 8..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:33 Download gff for
BS10033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Picot-RA | 751..2301 | 17..1567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:29 Download gff for
BS10033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Picot-RA | 747..2308 | 8..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:25 Download gff for
BS10033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Picot-RA | 751..2301 | 17..1567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:25 Download gff for
BS10033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16655757..16655972 | 1352..1567 | 100 | <- | Minus |
2R | 16656036..16656566 | 821..1351 | 100 | <- | Minus |
2R | 16656631..16657194 | 257..820 | 100 | <- | Minus |
2R | 16657264..16657439 | 81..256 | 100 | <- | Minus |
2R | 16663515..16663578 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:33 Download gff for
BS10033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12543262..12543477 | 1352..1567 | 100 | <- | Minus |
arm_2R | 12543541..12544071 | 821..1351 | 100 | <- | Minus |
arm_2R | 12544136..12544699 | 257..820 | 100 | <- | Minus |
arm_2R | 12544769..12544944 | 81..256 | 100 | <- | Minus |
arm_2R | 12551020..12551083 | 17..80 | 100 | | Minus |
BS10033.pep Sequence
Translation from 16 to 1566
> BS10033.pep
MSASKEAICGSTEKDLEKPALGCFATRYFVTFMLFLGMANAYVMRTNMSV
AIVAMVNHTAIKSGEAEEYDDECGDRDIPIDDSQDGEFAWSSALQGYILS
SFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAARGGGVW
GLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTII
SMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTID
EREKKYINDSLWGTDVVKSPPIPFKAIIKSLPFYAILFAHMGHNYGYETL
MTELPTYMKQVLRFSLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRF
SHTATRKLINSIGQYGPGVALIAASYTGCDRALTLAILTIGVGLNGGIYS
GFKINHLDLTPRFAGFLMSITNCSANLAGLLAPIAAGHLISDPSKPMMGQ
WQIVFFIAAFVYIICGTFYNIFGSGERQYWDNPEDDEQKPALQTTVTTSP
ARLSNGSTAPAAISSS*
BS10033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Picot-PD | 516 | CG8098-PD | 1..516 | 1..516 | 2708 | 100 | Plus |
Picot-PC | 516 | CG8098-PC | 1..516 | 1..516 | 2708 | 100 | Plus |
Picot-PA | 516 | CG8098-PA | 1..516 | 1..516 | 2708 | 100 | Plus |
Picot-PB | 529 | CG8098-PB | 27..529 | 14..516 | 2603 | 98.6 | Plus |
CG6978-PA | 479 | CG6978-PA | 37..479 | 23..479 | 1469 | 60.8 | Plus |