Clone BS10033 Report

Search the DGRC for BS10033

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptPicot-RA
Protein status:BS10033.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10033.3prime Sequence

903 bp (862 high quality bases) assembled on 2006-04-19

> BS10033.3prime
ATGGTCTAGAAAGCTTCTAGGAACTCGAGATGGCCGCTGGTGCCGTGCTG
CCGTTGCTCAGCCTCGCTGGGGAGGTGGTGACGGTCGTCTGGAGGGCCGG
CTTCTGCTCATCGTCCTCCGGATTGTCCCAGTACTGACGCTCACCGGATC
CGAAGATGTTGTAGAAGGTACCGCAAATGATGTACACAAAGGCAGCGATG
AAGAACACGATCTGCCACTGACCCATCATGGGCTTGCTGGGATCAGAAAT
GAGGTGACCTGCAGCAATGGGCGCTAAGAGACCAGCCAAATTGGCAGAGC
AGTTAGTGATCGACATTAGGAAGCCGGCGAAACGCGGTGTGAGGTCCAAG
TGGTTGATCTTGAAGCCGGAGTAGATACCTCCATTAAGACCCACTCCGAT
GGTGAGGATGGCCAAGGTCAGTGCTCTGTCGCAGCCCGTGTAGGAGGCGG
CGATTAGGGCGACTCCCGGTCCATACTGGCCAATACTGTTGATCAGCTTC
CTGGTGGCCGTGTGCGAGAATCTCTTCGAGCTAATCATCCAATCGGCGAC
CACCGAGATGAACATGGAGAAGAGCCACATGGCCAAGTAGGGCAGGGAGC
TGAGCAGACCGTTCGACTTCAGGGAGAAGCGGAGCACCTGCTTCATGTAG
GTGGGCAGCTCGGTCATCAGAGTCTCATAGCCGTAGTTGTGACCCATGTG
GGCGAACAGAATGGCGTAGAAGGGCAGCGACTTGATGATAGCCTTGAAGG
GAATGGGAGGGCTCTTAACAACATCAGTTCCCCAGAGGGAATCGTTAATG
TACTTCTTCTCGCGCTCATCAATAGTGGGATGCGAAGAGGGATCCTCGTG
CACGAAGATCAGGAAGGCGATGGACCAGACGGTACCCACAATTCCAAACA
CAT

BS10033.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8098-PA 1551 Picot-RA 665..1551 903..17 4435 100 Minus
CG8098-PB 1590 Picot-RB 704..1590 903..17 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Picot-RD 2870 CG8098-RD 1550..2436 903..17 4435 100 Minus
Picot-RC 2367 CG8098-RC 1047..1933 903..17 4435 100 Minus
Picot-RB 2333 CG8098-RB 1013..1899 903..17 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16656036..16656568 233..765 2665 100 Plus
2R 25286936 2R 16655757..16655974 17..234 1090 100 Plus
2R 25286936 2R 16656631..16656770 764..903 700 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:19:50 has no hits.

BS10033.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:12 Download gff for BS10033.3prime
Subject Subject Range Query Range Percent Splice Strand
Picot-PB 704..1590 17..903 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:38 Download gff for BS10033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8098-PB 704..1590 17..903 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:20 Download gff for BS10033.3prime
Subject Subject Range Query Range Percent Splice Strand
Picot-RB 1013..1903 12..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:30 Download gff for BS10033.3prime
Subject Subject Range Query Range Percent Splice Strand
Picot-RB 1013..1903 12..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:30 Download gff for BS10033.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16656631..16656770 764..903 100   Plus
2R 16655753..16655972 12..232 99 <- Plus
2R 16656036..16656566 233..763 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:20 Download gff for BS10033.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12543258..12543477 12..232 99 <- Plus
arm_2R 12543541..12544071 233..763 100 <- Plus
arm_2R 12544136..12544275 764..903 100   Plus

BS10033.5prime Sequence

930 bp (866 high quality bases) assembled on 2006-04-19

> BS10033.5prime
GAAGTTATCAGTCGACATGTCAGCGTCGAAGGAGGCGATTTGCGGGAGCA
CGGAGAAGGATCTGGAGAAGCCGGCATTGGGATGCTTTGCCACCCGGTAC
TTTGTGACCTTTATGCTTTTCCTGGGCATGGCCAATGCCTATGTGATGCG
CACCAACATGTCGGTGGCCATTGTGGCCATGGTGAACCACACGGCCATCA
AGTCTGGAGAGGCAGAGGAGTACGATGATGAGTGCGGAGATCGGGATATT
CCTATTGATGACTCTCAGGATGGCGAGTTCGCCTGGAGCTCAGCTCTGCA
GGGCTACATCTTGTCGTCCTTCTTCTATGGCTATGTCATCACCCAGATTC
CCTTTGGCATATTGGCCAAGAAGTACGGTTCCCTGCGCTTCCTCGGCTAC
GGCATGTTGATCAACTCCGTGTTTGCCTTCCTGGTTCCGGTGGCTGCCCG
CGGTGGAGGTGTTTGGGGTCTGTGCGCCGTGCGTTTCATCCAAGGTCTAG
GTGAGGGTCCCATCGTGCCCTGCACCCACGCCATGTTGGCCAAATGGATT
CCGCCCAACGAAAGGTCACGAATGGGTGCCGCCGTGTATGCGGGTGCACA
GTTTGGAACCATCATCTCTATGCCACTTTCCGGCCTGCTGGCTGAATACG
GATTCGATGGCGGCTGGCCGTCGATCTTCTATGTGTTTGGAATTGTGGGT
ACCGTCTGGTCCATCGCCTTCCTGATCTTCGTGCACGAGGATCCCTCTTC
GCATCCCACTATTGATGAGCGCGAGAAGAAGTACATTAACGATTCCCTCT
GGGGAACTGATGTTGTTAAGAGCCCTCCCATTCCCTTCAAGGCTATCATC
AAGTCGCTGCCCTTCTACGCCATTCTGTTCGCCCACATGGGTCACAACTA
CGGCTATGAGACTCTGATGACCGAGCTGCC

BS10033.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8098-PA 1551 Picot-RA 1..914 17..930 4570 100 Plus
CG8098-PB 1590 Picot-RB 104..953 81..930 4250 100 Plus
CG6978-PA 1440 CG6978-RA 154..221 128..195 190 91.1 Plus
CG4330-PA 1680 CG4330-RA 266..302 159..195 160 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Picot-RD 2870 CG8098-RD 886..1799 17..930 4570 100 Plus
Picot-RC 2367 CG8098-RC 383..1296 17..930 4570 100 Plus
Picot-RA 2735 CG8098-RA 751..1664 17..930 4570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16656631..16657194 820..257 2820 100 Minus
2R 25286936 2R 16657263..16657440 257..80 890 100 Minus
2R 25286936 2R 16656457..16656568 930..819 560 100 Minus
X 23542271 X 4784486..4784872 296..682 465 74.7 Plus
2R 25286936 2R 16663514..16663578 81..17 325 100 Minus
X 23542271 X 4784336..4784422 113..199 270 87.4 Plus
Blast to na_te.dros performed on 2015-02-04 04:13:24 has no hits.

BS10033.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:13 Download gff for BS10033.5prime
Subject Subject Range Query Range Percent Splice Strand
Picot-PA 1..914 17..930 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:39 Download gff for BS10033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8098-PA 1..914 17..930 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:59:19 Download gff for BS10033.5prime
Subject Subject Range Query Range Percent Splice Strand
Picot-RA 744..1664 8..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:34:44 Download gff for BS10033.5prime
Subject Subject Range Query Range Percent Splice Strand
Picot-RA 744..1664 8..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:34:44 Download gff for BS10033.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16656457..16656566 821..930 100 <- Minus
2R 16656631..16657194 257..820 100 <- Minus
2R 16657264..16657439 81..256 100 <- Minus
2R 16663515..16663585 8..80 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:59:19 Download gff for BS10033.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12543962..12544071 821..930 100 <- Minus
arm_2R 12544136..12544699 257..820 100 <- Minus
arm_2R 12544769..12544944 81..256 100 <- Minus
arm_2R 12551020..12551090 8..80 94   Minus

BS10033.complete Sequence

1583 bp (1583 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636535

> BS10033.complete
GAAGTTATCAGTCGACATGTCAGCGTCGAAGGAGGCGATTTGCGGGAGCA
CGGAGAAGGATCTGGAGAAGCCGGCATTGGGATGCTTTGCCACCCGGTAC
TTTGTGACCTTTATGCTTTTCCTGGGCATGGCCAATGCCTATGTGATGCG
CACCAACATGTCGGTGGCCATTGTGGCCATGGTGAACCACACGGCCATCA
AGTCTGGAGAGGCAGAGGAGTACGATGATGAGTGCGGAGATCGGGATATT
CCTATTGATGACTCTCAGGATGGCGAGTTCGCCTGGAGCTCAGCTCTGCA
GGGCTACATCTTGTCGTCCTTCTTCTATGGCTATGTCATCACCCAGATTC
CCTTTGGCATATTGGCCAAGAAGTACGGTTCCCTGCGCTTCCTCGGCTAC
GGCATGTTGATCAACTCCGTGTTTGCCTTCCTGGTTCCGGTGGCTGCCCG
CGGTGGAGGTGTTTGGGGTCTGTGCGCCGTGCGTTTCATCCAAGGTCTAG
GTGAGGGTCCCATCGTGCCCTGCACCCACGCCATGTTGGCCAAATGGATT
CCGCCCAACGAAAGGTCACGAATGGGTGCCGCCGTGTATGCGGGTGCACA
GTTTGGAACCATCATCTCTATGCCACTTTCCGGCCTGCTGGCTGAATACG
GATTCGATGGCGGCTGGCCGTCGATCTTCTATGTGTTTGGAATTGTGGGT
ACCGTCTGGTCCATCGCCTTCCTGATCTTCGTGCACGAGGATCCCTCTTC
GCATCCCACTATTGATGAGCGCGAGAAGAAGTACATTAACGATTCCCTCT
GGGGAACTGATGTTGTTAAGAGCCCTCCCATTCCCTTCAAGGCTATCATC
AAGTCGCTGCCCTTCTACGCCATTCTGTTCGCCCACATGGGTCACAACTA
CGGCTATGAGACTCTGATGACCGAGCTGCCCACCTACATGAAGCAGGTGC
TCCGCTTCTCCCTGAAGTCGAACGGTCTGCTCAGCTCCCTGCCCTACTTG
GCCATGTGGCTCTTCTCCATGTTCATCTCGGTGGTCGCCGATTGGATGAT
TAGCTCGAAGAGATTCTCGCACACGGCCACCAGGAAGCTGATCAACAGTA
TTGGCCAGTATGGACCGGGAGTCGCCCTAATCGCCGCCTCCTACACGGGC
TGCGACAGAGCACTGACCTTGGCCATCCTCACCATCGGAGTGGGTCTTAA
TGGAGGTATCTACTCCGGCTTCAAGATCAACCACTTGGACCTCACACCGC
GTTTCGCCGGCTTCCTAATGTCGATCACTAACTGCTCTGCCAATTTGGCT
GGTCTCTTAGCGCCCATTGCTGCAGGTCACCTCATTTCTGATCCCAGCAA
GCCCATGATGGGTCAGTGGCAGATCGTGTTCTTCATCGCTGCCTTTGTGT
ACATCATTTGCGGTACCTTCTACAACATCTTCGGATCCGGTGAGCGTCAG
TACTGGGACAATCCGGAGGACGATGAGCAGAAGCCGGCCCTCCAGACGAC
CGTCACCACCTCCCCAGCGAGGCTGAGCAACGGCAGCACGGCACCAGCGG
CCATCTCGAGTTCCTAGAAGCTTTCTAGACCAT

BS10033.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
Picot-RD 1551 CG8098-PD 1..1551 17..1567 7755 100 Plus
Picot-RC 1551 CG8098-PC 1..1551 17..1567 7755 100 Plus
Picot-RA 1551 CG8098-PA 1..1551 17..1567 7755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Picot-RD 2870 CG8098-RD 886..2436 17..1567 7755 100 Plus
Picot-RC 2367 CG8098-RC 383..1933 17..1567 7755 100 Plus
Picot-RA 2735 CG8098-RA 751..2301 17..1567 7755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16656631..16657194 820..257 2820 100 Minus
2R 25286936 2R 16656036..16656568 1351..819 2665 100 Minus
2R 25286936 2R 16655757..16655974 1567..1350 1090 100 Minus
2R 25286936 2R 16657263..16657440 257..80 890 100 Minus
X 23542271 X 4784486..4784872 296..682 465 74.7 Plus
2R 25286936 2R 16663514..16663578 81..17 325 100 Minus
X 23542271 X 4784336..4784422 113..199 270 87.4 Plus
Blast to na_te.dros performed on 2014-11-27 08:32:31 has no hits.

BS10033.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:28 Download gff for BS10033.complete
Subject Subject Range Query Range Percent Splice Strand
Picot-RA 1..1551 17..1567 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:09 Download gff for BS10033.complete
Subject Subject Range Query Range Percent Splice Strand
Picot-RA 747..2308 8..1572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:33 Download gff for BS10033.complete
Subject Subject Range Query Range Percent Splice Strand
Picot-RA 751..2301 17..1567 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:29 Download gff for BS10033.complete
Subject Subject Range Query Range Percent Splice Strand
Picot-RA 747..2308 8..1572 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:25 Download gff for BS10033.complete
Subject Subject Range Query Range Percent Splice Strand
Picot-RA 751..2301 17..1567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:25 Download gff for BS10033.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16655757..16655972 1352..1567 100 <- Minus
2R 16656036..16656566 821..1351 100 <- Minus
2R 16656631..16657194 257..820 100 <- Minus
2R 16657264..16657439 81..256 100 <- Minus
2R 16663515..16663578 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:33 Download gff for BS10033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12543262..12543477 1352..1567 100 <- Minus
arm_2R 12543541..12544071 821..1351 100 <- Minus
arm_2R 12544136..12544699 257..820 100 <- Minus
arm_2R 12544769..12544944 81..256 100 <- Minus
arm_2R 12551020..12551083 17..80 100   Minus

BS10033.pep Sequence

Translation from 16 to 1566

> BS10033.pep
MSASKEAICGSTEKDLEKPALGCFATRYFVTFMLFLGMANAYVMRTNMSV
AIVAMVNHTAIKSGEAEEYDDECGDRDIPIDDSQDGEFAWSSALQGYILS
SFFYGYVITQIPFGILAKKYGSLRFLGYGMLINSVFAFLVPVAARGGGVW
GLCAVRFIQGLGEGPIVPCTHAMLAKWIPPNERSRMGAAVYAGAQFGTII
SMPLSGLLAEYGFDGGWPSIFYVFGIVGTVWSIAFLIFVHEDPSSHPTID
EREKKYINDSLWGTDVVKSPPIPFKAIIKSLPFYAILFAHMGHNYGYETL
MTELPTYMKQVLRFSLKSNGLLSSLPYLAMWLFSMFISVVADWMISSKRF
SHTATRKLINSIGQYGPGVALIAASYTGCDRALTLAILTIGVGLNGGIYS
GFKINHLDLTPRFAGFLMSITNCSANLAGLLAPIAAGHLISDPSKPMMGQ
WQIVFFIAAFVYIICGTFYNIFGSGERQYWDNPEDDEQKPALQTTVTTSP
ARLSNGSTAPAAISSS*

BS10033.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Picot-PD 516 CG8098-PD 1..516 1..516 2708 100 Plus
Picot-PC 516 CG8098-PC 1..516 1..516 2708 100 Plus
Picot-PA 516 CG8098-PA 1..516 1..516 2708 100 Plus
Picot-PB 529 CG8098-PB 27..529 14..516 2603 98.6 Plus
CG6978-PA 479 CG6978-PA 37..479 23..479 1469 60.8 Plus