Clone Sequence Records
BS10034.3prime Sequence
931 bp (811 high quality bases) assembled on 2006-04-19
> BS10034.3prime
ATGGTCTAGAAAGCTTCTAATCCGGATACAGGTAGTCCTGCAGGATGTTC
TGGAAGGCTATCTTTATCTTGCCGCGATCACGGCCGTTCAGCTTTTGGAT
GTCGGGCAGCAGGCTCATCAGAAACATGGCATCCGGATCGGTCTTGCAGT
CGCACAGCTCCGCACCGCCGTTGGACACGGATCCGCCGGACGCGTTGTTG
GCTTCCAAACGCAGAGGAAGCGCTGACGGCGGCACCTGTGGATGTCCTCC
ATGCATATGGTTGTGCCCATGCCGTTGACTCAAGTAGCTACTGCTACTGC
TGGCACTAACACTACTACTGGGCGCCATCGGGGTGGCCACGGCCGCAGTG
GATGGTGTGGGCAGTTCCGCTTCGGATAAGCCAGCAGTTCCTGGAACACC
TCCTCCTCCTCCGCCTCCGGCGTGCGTTGTAGTGCTAACCAAATCCACGG
GCTTGCTGAAAGTAGGTCGCACAAACGAAATGTTTGGATGGGCAGTCGGC
TGTGCGGAGTAGTTGACCCCGGCCACTGCTGCAGTTGGAGCTTGGAGTTC
CTGGGAACGCGGACGAATAGCGCCACGCATCTCGTCATGGTAGGTGCGCA
TTTGGAGGCGACCCGGAAGCATTCGGCTGGCGTGTGAATGCTGGTTGGCA
TAACGACGCTGGGCCTCCGCCGATGAAGAGCTAGAAGTAGGCGCCATCTT
GTGTAGGTCCTGGTCATCCTGTTCATCCTCCTCGGGCTCGTGCGCCTCTT
GTTCGTAGTCATCCACCGGCTCCTCGCACTCCGACTTAATGTCGTTGCCG
TCCAACTGGCCGTGGTAACGACTGTTGCGCTGCTGCTCCTCCTCCATGAT
GTCATCCAGCTCGGAGTTGTTTGTGTCCGCCTCGTCAAAGTAGTCCAGAT
AGTTGTCCAGCTGCTGTGCAGGTGGTGACTG
BS10034.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-PA | 1413 | CG6276-RA | 559..1413 | 871..17 | 4275 | 100 | Minus |
| CG6276-PA | 1413 | CG6276-RA | 499..554 | 931..876 | 280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-RA | 1806 | CG6276-RA | 655..1569 | 931..17 | 4530 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15318440..15319354 | 17..931 | 4515 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:40:25 has no hits.
BS10034.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:14 Download gff for
BS10034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-PA | 499..1413 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:41 Download gff for
BS10034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-PA | 499..1413 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:27:32 Download gff for
BS10034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 655..1573 | 11..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:40 Download gff for
BS10034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 655..1573 | 11..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:40 Download gff for
BS10034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15318436..15319354 | 11..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:27:32 Download gff for
BS10034.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11144158..11145076 | 11..931 | 99 | | Plus |
BS10034.5prime Sequence
920 bp (776 high quality bases) assembled on 2006-04-19
> BS10034.5prime
GAAGTTATCAGTCGACATGATGACGACCGACTTCGCGGGCAGCCAGTTCG
TGTCCAGCAATCCCAACACCAGCTGTAGTGCATCCCGCTGGCTAACGGAG
GAGGTCTTTAAACTAATCGAAATTGTGCAGCGCGACGAGGCCATCTACAA
TCCGAGGCACAAATACTACTTTTGCCGCCCGTACGTGGAGAACTTTTGGC
GCGAGGTGGATTTGAAGCTGGAAAAGAATCCGGGCGCCAGTCTGGCCAAG
TGGACCAATTTGCGCATCTCGTTCCGACGAGAGTACACCAACTATCTGGA
GGAAAAGGTGCCACCCTGCTGGTCCTACTTCGACCGCATGTTCTTTCTGC
ATCCGTATCTACGCAAGAAGCACCAGCAGCCCAAATCGCTGGACACACAG
GTGCAGGACGCCCTGGCACACCTCTCGAACCTTTCTAGTCGTATGCAGCG
TGAGCGTTCAGTGACCATTCCGGGCAGCAGCAGTATTGGTGGCCAGCCCA
CGCCCTCCGCCCACCAGTCACCACCTGCACAGCAGCTGGACAACTATCTG
GACTACTTTGACGAGGCGGAACACAACAACTCCGAGCTGGATGACATCAT
GGAGGAGGAGCAGCAGCGCAACAGTCGTTACCACGGCCAGTTGGACGGCA
ACGACATTAAGTCGGAGTGCGAGGAGCCGGTGGATGACTACGAACAAGAG
GCGCACGAGCCCGAGGAGGATGAACAGGATGACCAGGACCTACACAAGAT
GGCGCCTACTTCTAGCTCTTCATCGGCGGAGGCCCAGCGTCGTTATGCCA
ACCAGCATTCACACGCCAGCCGAATGCTTCCGGGTCGCCTCCAAATGCGC
ACCTACCATGACGAGATGCGTGGCGCTATTCGTCCGCGTTCCCAGGAACT
CCAAGCTCCNACTGCAGCAG
BS10034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-PA | 1413 | CG6276-RA | 1..904 | 17..920 | 4501 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:31:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-RA | 1806 | CG6276-RA | 156..1060 | 16..920 | 4514 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15318949..15319767 | 920..102 | 4084 | 99.9 | Minus |
| 3R | 32079331 | 3R | 15319821..15319914 | 109..16 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:31:50 has no hits.
BS10034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:16 Download gff for
BS10034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:43 Download gff for
BS10034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:44:19 Download gff for
BS10034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 147..1060 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:05:34 Download gff for
BS10034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 147..1060 | 9..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:05:34 Download gff for
BS10034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15318949..15319765 | 104..920 | 99 | <- | Minus |
| 3R | 15319827..15319918 | 9..103 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:44:19 Download gff for
BS10034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11144671..11145487 | 104..920 | 99 | <- | Minus |
| arm_3R | 11145549..11145640 | 9..103 | 95 | | Minus |
BS10034.complete Sequence
1445 bp (1445 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636536
> BS10034.complete
GAAGTTATCAGTCGACATGATGACGACCGACTTCGCGGGCAGCCAGTTCG
TGTCCAGCAATCCCAACACCAGCTGTAGTGCATCCCGCTGGCTAACGGAG
GAGGTCTTTAAACTAATCGAAATTGTGCAGCGCGACGAGGCCATCTACAA
TCCGAGGCACAAATACTACTTTTGCCGCCCGTACGTGGAGAACTTTTGGC
GCGAGGTGGATTTGAAGCTGGAAAAGAATCCGGGCGCCAGTCTGGCCAAG
TGGACCAATTTGCGCATCTCGTTCCGACGAGAGTACACCAACTATCTGGA
GGAAAAGGTGCCACCCTGCTGGTCCTACTTCGACCGCATGTTCTTTCTGC
ATCCGTATCTACGCAAGAAGCACCAGCAGCCCAAATCGCTGGACACACAG
GTGCAGGACGCCCTGGCACACCTCTCGAACCTTTCTAGTCGTATGCAGCG
TGAGCGTTCAGTGACCATTCCGGGCAGCAGCAGTATTGGTGGCCAGCCCA
CGCCCTCCGCCCACCAGTCACCACCTGCACAGCAGCTGGACAACTATCTG
GACTACTTTGACGAGGCGGAACACAACAACTCCGAGCTGGATGACATCAT
GGAGGAGGAGCAGCAGCGCAACAGTCGTTACCACGGCCAGTTGGACGGCA
ACGACATTAAGTCGGAGTGCGAGGAGCCGGTGGATGACTACGAACAAGAG
GCGCACGAGCCCGAGGAGGATGAACAGGATGACCAGGACCTACACAAGAT
GGCGCCTACTTCTAGCTCTTCATCGGCGGAGGCCCAGCGTCGTTATGCCA
ACCAGCATTCACACGCCAGCCGAATGCTTCCGGGTCGCCTCCAAATGCGC
ACCTACCATGACGAGATGCGTGGCGCTATTCGTCCGCGTTCCCAGGAACT
CCAAGCTCCAACTGCAGCAGTGGCCGGGGTCAACTACTCCGCACAGCCGA
CTGCCCATCCAAACATTTCGTTTGTGCGACCTACTTTCAGCAAGCCCGTG
GATTTGGTTAGCACTACAACGCACGCCGGAGGCGGAGGAGGAGGAGGTGT
TCCAGGAACTGCTGGCTTATCCGAAGCGGAACTGCCCACACCATCCACTG
CGGCCGTGGCCACCCCGATGGCGCCCAGTAGTAGTGTTAGTGCCAGCAGT
AGCAGTAGCTACTTGAGTCAACGGCATGGGCACAACCATATGCATGGAGG
ACATCCACAGGTGCCGCCGTCAGCGCTTCCTCTGCGTTTGGAAGCCAACA
ACGCGTCCGGCGGATCCGTGTCCAACGGCGGTGCGGAGCTGTGCGACTGC
AAGACCGATCCGGATGCCATGTTTCTGATGAGCCTGCTGCCCGACATCCA
AAAGCTGAACGGCCGTGATCGCGGCAAGATAAAGATAGCCTTCCAGAACA
TCCTGCAGGACTACCTGTATCCGGATTAGAAGCTTTCTAGACCAT
BS10034.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-RA | 1413 | CG6276-PA | 1..1413 | 17..1429 | 7065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-RA | 1806 | CG6276-RA | 156..1569 | 16..1429 | 7070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15318440..15319767 | 1429..102 | 6640 | 100 | Minus |
| 3R | 32079331 | 3R | 15319821..15319914 | 109..16 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:49:05 has no hits.
BS10034.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:30 Download gff for
BS10034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 1..1413 | 17..1429 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:12 Download gff for
BS10034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 124..1550 | 9..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:38 Download gff for
BS10034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 157..1569 | 17..1429 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:30 Download gff for
BS10034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 124..1550 | 9..1435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:54 Download gff for
BS10034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6276-RA | 157..1569 | 17..1429 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:54 Download gff for
BS10034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15318440..15319765 | 104..1429 | 100 | <- | Minus |
| 3R | 15319827..15319913 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:38 Download gff for
BS10034.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11144162..11145487 | 104..1429 | 100 | <- | Minus |
| arm_3R | 11145549..11145635 | 17..103 | 100 | | Minus |
BS10034.pep Sequence
Translation from 16 to 1428
> BS10034.pep
MMTTDFAGSQFVSSNPNTSCSASRWLTEEVFKLIEIVQRDEAIYNPRHKY
YFCRPYVENFWREVDLKLEKNPGASLAKWTNLRISFRREYTNYLEEKVPP
CWSYFDRMFFLHPYLRKKHQQPKSLDTQVQDALAHLSNLSSRMQRERSVT
IPGSSSIGGQPTPSAHQSPPAQQLDNYLDYFDEAEHNNSELDDIMEEEQQ
RNSRYHGQLDGNDIKSECEEPVDDYEQEAHEPEEDEQDDQDLHKMAPTSS
SSSAEAQRRYANQHSHASRMLPGRLQMRTYHDEMRGAIRPRSQELQAPTA
AVAGVNYSAQPTAHPNISFVRPTFSKPVDLVSTTTHAGGGGGGGVPGTAG
LSEAELPTPSTAAVATPMAPSSSVSASSSSSYLSQRHGHNHMHGGHPQVP
PSALPLRLEANNASGGSVSNGGAELCDCKTDPDAMFLMSLLPDIQKLNGR
DRGKIKIAFQNILQDYLYPD*
BS10034.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6276-PA | 470 | CG6276-PA | 1..470 | 1..470 | 2497 | 100 | Plus |
