Clone Sequence Records
BS10036.3prime Sequence
825 bp (809 high quality bases) assembled on 2006-04-19
> BS10036.3prime
ATGGTCTAGAAAGCTTCTAATTCTTGAACTGAAAAACGAGTATCAAGATG
ATGGCCAGCAGCACGGCGCTCAGGATGCCCACCAAAATAAGCTTCTTCTT
GCGCACTTTGTTCCTGTAAGAGCTCGCCTTGCGCAGATTTTCCGTGCCCT
GCGAGACAAAAATGCTAGTCTGTTCCACCTGCGACTCGATGGAGTCCACC
GTCAGTCCCTGCTCGTAGACCAGGGCGCCAAGCTTCTTGTATATCTCGTT
CACGCCCACGATGTTGTTCTCCAACTCCCGTATGACCTGCTCCTGTTCCT
CGAGGGCCTGCAGGTCCGCCTGCTCCTCCATCTGAGTCTGCATCTGTTGC
TGGTTTGATTTGCGATTGAAGAAGTTGTCCTCGAAGAAGGAGTTGTTGTC
CTGCTGGCTGGCGCTACTGTTGGAGCTGCCGGTACGCGATGAGCCGGGTG
GACGGGCGATGTTGTAGCTATCTCCGCGCGCCTGCCGCAACGCCGTCTTC
TCTATGTCCGCCGTCTTGCGCTGAACAGACTGGAAGGCGGTCAGTGCCGC
CGTGAACTCGTCCACGAGCCTATCCCGCTGGATCTTCAGGTGGCGCTCCT
TGCACTTGTCCACCTCGTTGATTTGATTGTTTGTGTCGGTCACCAGCTGG
TTGGTGTAGGTCATTATTTGGTGGAGCTGCTTCTTGAGCTCCGGAGAATC
TTGGGGCGTGTTCAGTTGATTGACCATGCGCTGCATCGTGGACACATTCT
GCTGCACCTTCTGGATGCTGGTGGCTATAATCTGGGCCAGCCTTTGGAAA
TCTATTTCGCTTAAGCCACCTCCTC
BS10036.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5081-PB | 849 | Syx7-RB | 41..849 | 825..17 | 4020 | 99.8 | Minus |
| CG5081-PA | 849 | Syx7-RA | 41..849 | 825..17 | 4020 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx7-RB | 1610 | CG5081-RB | 325..1134 | 825..16 | 4035 | 99.9 | Minus |
| Syx7-RA | 1573 | CG5081-RA | 288..1097 | 825..16 | 4035 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21447079..21447497 | 531..113 | 2095 | 100 | Minus |
| 3L | 28110227 | 3L | 21446863..21447007 | 674..530 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 21447555..21447652 | 113..16 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 21446295..21446375 | 825..745 | 390 | 98.8 | Minus |
| 3L | 28110227 | 3L | 21446442..21446512 | 745..675 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:08:02 has no hits.
BS10036.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:19 Download gff for
BS10036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-PA | 41..849 | 17..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:47 Download gff for
BS10036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5081-PA | 41..849 | 17..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:57:10 Download gff for
BS10036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 288..1103 | 9..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:34:30 Download gff for
BS10036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 288..1103 | 9..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:34:30 Download gff for
BS10036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21447556..21447658 | 9..112 | 98 | | Minus |
| 3L | 21446295..21446375 | 745..825 | 98 | -> | Minus |
| 3L | 21446443..21446512 | 675..744 | 100 | -> | Minus |
| 3L | 21446863..21447007 | 530..674 | 100 | -> | Minus |
| 3L | 21447081..21447497 | 113..529 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:57:10 Download gff for
BS10036.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21439395..21439475 | 745..825 | 98 | -> | Minus |
| arm_3L | 21439543..21439612 | 675..744 | 100 | -> | Minus |
| arm_3L | 21439963..21440107 | 530..674 | 100 | -> | Minus |
| arm_3L | 21440181..21440597 | 113..529 | 100 | -> | Minus |
| arm_3L | 21440656..21440758 | 9..112 | 98 | | Minus |
BS10036.5prime Sequence
879 bp (783 high quality bases) assembled on 2006-04-19
> BS10036.5prime
GAAGTTATCAGTCGACATGGACTTACAGCATATGGAGAATGGTCTAAGCG
GCGGGGGAGGAGGTGGCCTAAGCGAAATAGATTTCCAAAGGCTGGCCCAG
ATTATAGCCACCAGCATCCAGAAGGTGCAGCAGAATGTGTCCACGATGCA
GCGCATGGTCAATCAACTGAACACGCCCCAAGATTCTCCGGAGCTCAAGA
AGCAGCTCCACCAAATAATGACCTACACCAACCAGCTGGTGACCGACACA
AACAATCAAATCAACGAGGTGGACAAGTGCAAGGAGCGCCACCTGAAGAT
CCAGCGGGATAGGCTCGTGGACGAGTTCACGGCGGCACTGACCGCCTTCC
AGTCTGTTCAGCGCAAGACGGCGGACATAGAGAAGACGGCGTTGCGGCAG
GCGCGCGGAGATAGCTACAACATCGCCCGTCCACCCGGCTCATCGCGTAC
CGGCAGCTCCAACAGTAGCGCCAGCCAGCAGGACAACAACTCCTTCTTCG
AGGACAACTTCTTCAATCGCAAATCAAACCAGCAACAGATGCAGACTCAG
ATGGAGGAGCAGGCGGACCTGCAGGCCCTCGAGGAACAGGAGCAGGTCAT
ACGGGAGTTGGAGAACAACATCGTGGGCGTGAACGAGATATACAAGAAGC
TTGGCGCCCTGGTCTACGAGCAGGGACTGACGGTGGACTCCATCGAGTCG
CAGGTGGAACAGACTAGCATTTTTGTCTCGCAGGGCACGGAAAATCTGCG
CAAGGCGAGCTCTTACAGGAACAAAGTGCGCAAGAAGAAGCTTATTTTGG
TGGGCATCCTGAGCGCCGTGCTGCTGGCCATCATCTTGATACTCGTTTTT
CAGTTCAAGAATTAGAAGCTTTCTAGACC
BS10036.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5081-PB | 849 | Syx7-RB | 1..849 | 17..865 | 4245 | 100 | Plus |
| CG5081-PA | 849 | Syx7-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx7-RB | 1610 | CG5081-RB | 284..1134 | 16..866 | 4255 | 100 | Plus |
| Syx7-RA | 1573 | CG5081-RA | 247..1097 | 16..866 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21447079..21447497 | 351..769 | 2095 | 100 | Plus |
| 3L | 28110227 | 3L | 21446863..21447007 | 208..352 | 725 | 100 | Plus |
| 3L | 28110227 | 3L | 21446254..21446375 | 16..137 | 610 | 100 | Plus |
| 3L | 28110227 | 3L | 21447555..21447652 | 769..866 | 490 | 100 | Plus |
| 3L | 28110227 | 3L | 21446442..21446512 | 137..207 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:38:12 has no hits.
BS10036.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:20 Download gff for
BS10036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:43:49 Download gff for
BS10036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5081-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:43:35 Download gff for
BS10036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 247..1103 | 16..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:03:31 Download gff for
BS10036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 247..1103 | 16..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:03:31 Download gff for
BS10036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21446443..21446512 | 138..207 | 100 | -> | Plus |
| 3L | 21446863..21447007 | 208..352 | 100 | -> | Plus |
| 3L | 21446254..21446375 | 16..137 | 100 | -> | Plus |
| 3L | 21447081..21447497 | 353..769 | 100 | -> | Plus |
| 3L | 21447556..21447658 | 770..873 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:43:35 Download gff for
BS10036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21439963..21440107 | 208..352 | 100 | -> | Plus |
| arm_3L | 21439354..21439475 | 16..137 | 100 | -> | Plus |
| arm_3L | 21439543..21439612 | 138..207 | 100 | -> | Plus |
| arm_3L | 21440181..21440597 | 353..769 | 100 | -> | Plus |
| arm_3L | 21440656..21440758 | 770..873 | 98 | | Plus |
BS10036.complete Sequence
881 bp (881 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636537
> BS10036.complete
GAAGTTATCAGTCGACATGGACTTACAGCATATGGAGAATGGTCTAAGCG
GCGGGGGAGGAGGTGGCCTAAGCGAAATAGATTTCCAAAGGCTGGCCCAG
ATTATAGCCACCAGCATCCAGAAGGTGCAGCAGAATGTGTCCACGATGCA
GCGCATGGTCAATCAACTGAACACGCCCCAAGATTCTCCGGAGCTCAAGA
AGCAGCTCCACCAAATAATGACCTACACCAACCAGCTGGTGACCGACACA
AACAATCAAATCAACGAGGTGGACAAGTGCAAGGAGCGCCACCTGAAGAT
CCAGCGGGATAGGCTCGTGGACGAGTTCACGGCGGCACTGACCGCCTTCC
AGTCTGTTCAGCGCAAGACGGCGGACATAGAGAAGACGGCGTTGCGGCAG
GCGCGCGGAGATAGCTACAACATCGCCCGTCCACCCGGCTCATCGCGTAC
CGGCAGCTCCAACAGTAGCGCCAGCCAGCAGGACAACAACTCCTTCTTCG
AGGACAACTTCTTCAATCGCAAATCAAACCAGCAACAGATGCAGACTCAG
ATGGAGGAGCAGGCGGACCTGCAGGCCCTCGAGGAACAGGAGCAGGTCAT
ACGGGAGTTGGAGAACAACATCGTGGGCGTGAACGAGATATACAAGAAGC
TTGGCGCCCTGGTCTACGAGCAGGGACTGACGGTGGACTCCATCGAGTCG
CAGGTGGAACAGACTAGCATTTTTGTCTCGCAGGGCACGGAAAATCTGCG
CAAGGCGAGCTCTTACAGGAACAAAGTGCGCAAGAAGAAGCTTATTTTGG
TGGGCATCCTGAGCGCCGTGCTGCTGGCCATCATCTTGATACTCGTTTTT
CAGTTCAAGAATTAGAAGCTTTCTAGACCAT
BS10036.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx7-RB | 849 | CG5081-PB | 1..849 | 17..865 | 4245 | 100 | Plus |
| Syx7-RA | 849 | CG5081-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx7-RB | 1610 | CG5081-RB | 284..1134 | 16..866 | 4255 | 100 | Plus |
| Syx7-RA | 1573 | CG5081-RA | 247..1097 | 16..866 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21447079..21447497 | 351..769 | 2095 | 100 | Plus |
| 3L | 28110227 | 3L | 21446863..21447007 | 208..352 | 725 | 100 | Plus |
| 3L | 28110227 | 3L | 21446254..21446375 | 16..137 | 610 | 100 | Plus |
| 3L | 28110227 | 3L | 21447555..21447652 | 769..866 | 490 | 100 | Plus |
| 3L | 28110227 | 3L | 21446442..21446512 | 137..207 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:08:51 has no hits.
BS10036.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:31 Download gff for
BS10036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RB | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:13 Download gff for
BS10036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RB | 296..1152 | 16..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:24 Download gff for
BS10036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 248..1096 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:32 Download gff for
BS10036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RB | 296..1152 | 16..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:17 Download gff for
BS10036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syx7-RA | 248..1096 | 17..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:17 Download gff for
BS10036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21446255..21446375 | 17..137 | 100 | -> | Plus |
| 3L | 21446443..21446512 | 138..207 | 100 | -> | Plus |
| 3L | 21446863..21447007 | 208..352 | 100 | -> | Plus |
| 3L | 21447081..21447497 | 353..769 | 100 | -> | Plus |
| 3L | 21447556..21447651 | 770..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:24 Download gff for
BS10036.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21439355..21439475 | 17..137 | 100 | -> | Plus |
| arm_3L | 21439543..21439612 | 138..207 | 100 | -> | Plus |
| arm_3L | 21439963..21440107 | 208..352 | 100 | -> | Plus |
| arm_3L | 21440181..21440597 | 353..769 | 100 | -> | Plus |
| arm_3L | 21440656..21440751 | 770..865 | 100 | | Plus |
BS10036.pep Sequence
Translation from 16 to 864
> BS10036.pep
MDLQHMENGLSGGGGGGLSEIDFQRLAQIIATSIQKVQQNVSTMQRMVNQ
LNTPQDSPELKKQLHQIMTYTNQLVTDTNNQINEVDKCKERHLKIQRDRL
VDEFTAALTAFQSVQRKTADIEKTALRQARGDSYNIARPPGSSRTGSSNS
SASQQDNNSFFEDNFFNRKSNQQQMQTQMEEQADLQALEEQEQVIRELEN
NIVGVNEIYKKLGALVYEQGLTVDSIESQVEQTSIFVSQGTENLRKASSY
RNKVRKKKLILVGILSAVLLAIILILVFQFKN*
BS10036.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syx7-PB | 282 | CG5081-PB | 1..282 | 1..282 | 1398 | 100 | Plus |
| Syx7-PA | 282 | CG5081-PA | 1..282 | 1..282 | 1398 | 100 | Plus |
| Syx13-PB | 284 | CG11278-PB | 35..274 | 11..274 | 271 | 25.8 | Plus |
| Syx13-PA | 284 | CG11278-PA | 35..274 | 11..274 | 271 | 25.8 | Plus |
| Syx16-PA | 352 | CG1467-PA | 206..348 | 132..277 | 191 | 34.2 | Plus |
