Clone Sequence Records
BS10043.3prime Sequence
896 bp (830 high quality bases) assembled on 2006-04-19
> BS10043.3prime
ATGGTCTAGAAAGCTTTTAATCGTATATATAGTGGCTTTCGATCGCTGCC
ATCTTGTTTAGATGCGACGCCATCTTCACCTCGTCGTCCATGGGACCGGA
ATTGGATTGCTTCTGGCAGGGTTTGGTTTGCGTTTCCGTTTCGGTATCGG
TTTCCGCCTCCGCTTCGTCCTTTGCGACTTCATCCTTCGTCGCGTCGCCG
GCTTCCTCTTGATCATTGTTAGTCGCCTGGCTGCCATTTCGGCAGCGGGC
TATCAGATCGCTGTAGGGACGGCCGTGCAGCAGGCACACCAGCACCACGG
TCATATTGTCGCCGCCGAGGCCTCCCATTTGGCAGTCGGGTGCTAGGCAG
TGATTCATCAGCTCTTCGCAGATCTCCTCCGGAAACATGCCCATGCCGAT
GCGCGTGCGACAGAACTCGAGCACTTCCGCGTTGCTCATTACATCCCAAA
TGCCATCGCAGGCCAGCACGATGAATTCCCAATCGTCCATGATTTTCCGC
GTCTCCACGTCCGGGAAGGCTGTGACGATTTGATCTTCCGGTTTTTTGTT
CTCATGCTTGAATACATAGTCACCGAGGGCGCGGGAAAGCGCAAGATTGC
CGTTGACGCGATTGAACTCAACCCAGCCGCCGCCTTGGATGATCCGCTTG
GACTCCGCCTCGTTATTGGGCTTGTGGTCCAGCGACAGGACCTCCAGTTG
TCCGTTCACGCAGGCAATGGCGCGCGAGTCGCCTGCGTTGGCGCAATAAA
GCTTGTTGTCCTTTACCAAAACAACTACGGCAGTCGAGCCGGCCATCTGG
TCACCACATGTCTTGTTGCGTAGCATAACGTAGTCGATGTCCAGAAAGCC
CTGCTGCAGCGCCTGTTCGATGTTGTCGTTGTACTCCGGCCGCTTG
BS10043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-PA | 1116 | CG17746-RA | 237..1116 | 896..17 | 4400 | 100 | Minus |
CG17746-PB | 1116 | CG17746-RB | 237..1116 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-RB | 1694 | CG17746-RB | 458..1337 | 896..17 | 4400 | 100 | Minus |
CG17746-RA | 1577 | CG17746-RA | 483..1362 | 896..17 | 4400 | 100 | Minus |
Ppm1-RA | 1422 | CG12169-RA | 621..1038 | 689..275 | 380 | 74.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3237162..3237666 | 17..521 | 2525 | 100 | Plus |
3L | 28110227 | 3L | 3237742..3238076 | 520..854 | 1675 | 100 | Plus |
3L | 28110227 | 3L | 582009..582426 | 689..275 | 325 | 73 | Minus |
3L | 28110227 | 3L | 3238611..3238657 | 850..896 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:58:34 has no hits.
BS10043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:33 Download gff for
BS10043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-PA | 237..1116 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:06 Download gff for
BS10043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-PB | 237..1116 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:47:32 Download gff for
BS10043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 483..1370 | 10..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:46 Download gff for
BS10043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 483..1370 | 10..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:46 Download gff for
BS10043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3237742..3238072 | 520..850 | 100 | <- | Plus |
3L | 3238612..3238657 | 851..896 | 100 | | Plus |
3L | 3237154..3237664 | 10..519 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:47:32 Download gff for
BS10043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3237154..3237664 | 10..519 | 99 | <- | Plus |
arm_3L | 3237742..3238072 | 520..850 | 100 | <- | Plus |
arm_3L | 3238612..3238657 | 851..896 | 100 | | Plus |
BS10043.5prime Sequence
902 bp (814 high quality bases) assembled on 2006-04-19
> BS10043.5prime
GAAGTTATCAGTCGACATGGGTCAGACTCTATCGGAACCGGTGACCGCCA
AGGAGTCAGCGTACTGCCAGAACGCCGCCTACCGCGTGGGCAGCTCCTGC
ATGCAGGGGTGGCGCATCAACATGGAGGACTCGCACACCCACATCCTCTC
GCTGCCGGACGATCCGGGAGCGGCATTCTTCGCCGTCTACGACGGGCACG
GAGGCGCCACGGTGGCCCAGTACGCCGGCAAGCACCTGCACAAGTACGTT
CTCAAGCGGCCGGAGTACAACGACAACATCGAACAGGCGCTGCAGCAGGG
CTTTCTGGACATCGACTACGTTATGCTACGCAACAAGACATGTGGTGACC
AGATGGCCGGCTCGACTGCCGTAGTTGTTTTGGTAAAGGACAACAAGCTT
TATTGCGCCAACGCAGGCGACTCGCGCGCCATTGCCTGCGTGAACGGACA
ACTGGAGGTCCTGTCGCTGGACCACAAGCCCAATAACGAGGCGGAGTCCA
AGCGGATCATCCAAGGCGGCGGCTGGGTTGAGTTCAATCGCGTCAACGGC
AATCTTGCGCTTTCCCGCGCCCTCGGTGACTATGTATTCAAGCATGAGAA
CAAAAAACCGGAAGATCAAATCGTCACAGCCTTCCCGGACGTGGAGACGC
GGAAAATCATGGACGATTGGGAATTCATCGTGCTGGCCTGCGATGGCATT
TGGGATGTAATGAGCAACGCGGAAGTGCTCGAGTTCTGTCGCACGCGCAT
CGGCATGGGCATGTTTCCGGAGGAGATCTGCGAAGAGCTGATGAATCACT
GCCTAGCACCCGACTGCCCAATGGGAGGCCTCGGCGGCGACAATATGACC
GTGGTGCTGGTGTGCCTGCTGCACGGCCGTCCCTACAGCGATCTGATAGC
CC
BS10043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-PA | 1116 | CG17746-RA | 1..886 | 17..902 | 4405 | 99.8 | Plus |
CG17746-PB | 1116 | CG17746-RB | 1..886 | 17..902 | 4405 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-RB | 1694 | CG17746-RB | 222..1107 | 17..902 | 4415 | 99.9 | Plus |
CG17746-RA | 1577 | CG17746-RA | 247..1132 | 17..902 | 4415 | 99.9 | Plus |
Ppm1-RA | 1422 | CG12169-RA | 175..1038 | 17..874 | 535 | 72.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3237742..3238076 | 629..295 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 3238611..3238893 | 299..17 | 1415 | 100 | Minus |
3L | 28110227 | 3L | 3237392..3237666 | 902..628 | 1360 | 99.6 | Minus |
3L | 28110227 | 3L | 581563..582426 | 17..874 | 450 | 70.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:28:35 has no hits.
BS10043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:34 Download gff for
BS10043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:07 Download gff for
BS10043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-PB | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:37:36 Download gff for
BS10043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 236..1132 | 6..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:15:13 Download gff for
BS10043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 236..1132 | 6..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:15:13 Download gff for
BS10043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3237392..3237664 | 630..902 | 99 | <- | Minus |
3L | 3237742..3238072 | 299..629 | 100 | <- | Minus |
3L | 3238612..3238904 | 6..298 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:37:36 Download gff for
BS10043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3238612..3238904 | 6..298 | 98 | | Minus |
arm_3L | 3237392..3237664 | 630..902 | 99 | <- | Minus |
arm_3L | 3237742..3238072 | 299..629 | 100 | <- | Minus |
BS10043.complete Sequence
1148 bp (1148 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636538
> BS10043.complete
GAAGTTATCAGTCGACATGGGTCAGACTCTATCGGAACCGGTGACCGCCA
AGGAGTCAGCGTACTGCCAGAACGCCGCCTACCGCGTGGGCAGCTCCTGC
ATGCAGGGGTGGCGCATCAACATGGAGGACTCGCACACCCACATCCTCTC
GCTGCCGGACGATCCGGGAGCGGCATTCTTCGCCGTCTACGACGGGCACG
GAGGCGCCACGGTGGCCCAGTACGCCGGCAAGCACCTGCACAAGTACGTT
CTCAAGCGGCCGGAGTACAACGACAACATCGAACAGGCGCTGCAGCAGGG
CTTTCTGGACATCGACTACGTTATGCTACGCAACAAGACATGTGGTGACC
AGATGGCCGGCTCGACTGCCGTAGTTGTTTTGGTAAAGGACAACAAGCTT
TATTGCGCCAACGCAGGCGACTCGCGCGCCATTGCCTGCGTGAACGGACA
ACTGGAGGTCCTGTCGCTGGACCACAAGCCCAATAACGAGGCGGAGTCCA
AGCGGATCATCCAAGGCGGCGGCTGGGTTGAGTTCAATCGCGTCAACGGC
AATCTTGCGCTTTCCCGCGCCCTCGGTGACTATGTATTCAAGCATGAGAA
CAAAAAACCGGAAGATCAAATCGTCACAGCCTTCCCGGACGTGGAGACGC
GGAAAATCATGGACGATTGGGAATTCATCGTGCTGGCCTGCGATGGCATT
TGGGATGTAATGAGCAACGCGGAAGTGCTCGAGTTCTGTCGCACGCGCAT
CGGCATGGGCATGTTTCCGGAGGAGATCTGCGAAGAGCTGATGAATCACT
GCCTAGCACCCGACTGCCAAATGGGAGGCCTCGGCGGCGACAATATGACC
GTGGTGCTGGTGTGCCTGCTGCACGGCCGTCCCTACAGCGATCTGATAGC
CCGCTGCCGAAATGGCAGCCAGGCGACTAACAATGATCAAGAGGAAGCCG
GCGACGCGACGAAGGATGAAGTCGCAAAGGACGAAGCGGAGGCGGAAACC
GATACCGAAACGGAAACGCAAACCAAACCCTGCCAGAAGCAATCCAATTC
CGGTCCCATGGACGACGAGGTGAAGATGGCGTCGCATCTAAACAAGATGG
CAGCGATCGAAAGCCACTATATATACGATTAAAAGCTTTCTAGACCAT
BS10043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-RB | 1116 | CG17746-PB | 1..1116 | 17..1132 | 5580 | 100 | Plus |
CG17746-RA | 1116 | CG17746-PA | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Ppm1-RA | 1059 | CG12169-PA | 1..864 | 17..874 | 465 | 71.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-RB | 1694 | CG17746-RB | 222..1337 | 17..1132 | 5580 | 100 | Plus |
CG17746-RA | 1577 | CG17746-RA | 247..1362 | 17..1132 | 5580 | 100 | Plus |
Ppm1-RA | 1422 | CG12169-RA | 175..1038 | 17..874 | 465 | 71.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3237162..3237666 | 1132..628 | 2525 | 100 | Minus |
3L | 28110227 | 3L | 3237742..3238076 | 629..295 | 1675 | 100 | Minus |
3L | 28110227 | 3L | 3238611..3238893 | 299..17 | 1415 | 100 | Minus |
3L | 28110227 | 3L | 581563..582426 | 17..874 | 465 | 71.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:36:01 has no hits.
BS10043.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:33 Download gff for
BS10043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RB | 1..1116 | 17..1132 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:15 Download gff for
BS10043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RB | 160..1294 | 6..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:06 Download gff for
BS10043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 247..1360 | 17..1130 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:33 Download gff for
BS10043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RB | 160..1294 | 6..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:58 Download gff for
BS10043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17746-RA | 247..1360 | 17..1130 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:58 Download gff for
BS10043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3238612..3238893 | 17..298 | 100 | | Minus |
3L | 3237742..3238072 | 299..629 | 100 | <- | Minus |
3L | 3237164..3237664 | 630..1130 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:06 Download gff for
BS10043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3237164..3237664 | 630..1130 | 100 | <- | Minus |
arm_3L | 3237742..3238072 | 299..629 | 100 | <- | Minus |
arm_3L | 3238612..3238893 | 17..298 | 100 | | Minus |
BS10043.pep Sequence
Translation from 16 to 1131
> BS10043.pep
MGQTLSEPVTAKESAYCQNAAYRVGSSCMQGWRINMEDSHTHILSLPDDP
GAAFFAVYDGHGGATVAQYAGKHLHKYVLKRPEYNDNIEQALQQGFLDID
YVMLRNKTCGDQMAGSTAVVVLVKDNKLYCANAGDSRAIACVNGQLEVLS
LDHKPNNEAESKRIIQGGGWVEFNRVNGNLALSRALGDYVFKHENKKPED
QIVTAFPDVETRKIMDDWEFIVLACDGIWDVMSNAEVLEFCRTRIGMGMF
PEEICEELMNHCLAPDCQMGGLGGDNMTVVLVCLLHGRPYSDLIARCRNG
SQATNNDQEEAGDATKDEVAKDEAEAETDTETETQTKPCQKQSNSGPMDD
EVKMASHLNKMAAIESHYIYD*
BS10043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17746-PB | 371 | CG17746-PB | 1..371 | 1..371 | 1982 | 100 | Plus |
CG17746-PA | 371 | CG17746-PA | 1..371 | 1..371 | 1982 | 100 | Plus |
Ppm1-PA | 352 | CG12169-PA | 1..299 | 1..297 | 1110 | 68.9 | Plus |
CG6036-PA | 371 | CG6036-PA | 5..293 | 1..295 | 505 | 39.6 | Plus |
alph-PF | 332 | CG1906-PF | 1..282 | 1..282 | 457 | 38.2 | Plus |