Clone BS10043 Report

Search the DGRC for BS10043

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG17746-RA
Protein status:BS10043.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10043.3prime Sequence

896 bp (830 high quality bases) assembled on 2006-04-19

> BS10043.3prime
ATGGTCTAGAAAGCTTTTAATCGTATATATAGTGGCTTTCGATCGCTGCC
ATCTTGTTTAGATGCGACGCCATCTTCACCTCGTCGTCCATGGGACCGGA
ATTGGATTGCTTCTGGCAGGGTTTGGTTTGCGTTTCCGTTTCGGTATCGG
TTTCCGCCTCCGCTTCGTCCTTTGCGACTTCATCCTTCGTCGCGTCGCCG
GCTTCCTCTTGATCATTGTTAGTCGCCTGGCTGCCATTTCGGCAGCGGGC
TATCAGATCGCTGTAGGGACGGCCGTGCAGCAGGCACACCAGCACCACGG
TCATATTGTCGCCGCCGAGGCCTCCCATTTGGCAGTCGGGTGCTAGGCAG
TGATTCATCAGCTCTTCGCAGATCTCCTCCGGAAACATGCCCATGCCGAT
GCGCGTGCGACAGAACTCGAGCACTTCCGCGTTGCTCATTACATCCCAAA
TGCCATCGCAGGCCAGCACGATGAATTCCCAATCGTCCATGATTTTCCGC
GTCTCCACGTCCGGGAAGGCTGTGACGATTTGATCTTCCGGTTTTTTGTT
CTCATGCTTGAATACATAGTCACCGAGGGCGCGGGAAAGCGCAAGATTGC
CGTTGACGCGATTGAACTCAACCCAGCCGCCGCCTTGGATGATCCGCTTG
GACTCCGCCTCGTTATTGGGCTTGTGGTCCAGCGACAGGACCTCCAGTTG
TCCGTTCACGCAGGCAATGGCGCGCGAGTCGCCTGCGTTGGCGCAATAAA
GCTTGTTGTCCTTTACCAAAACAACTACGGCAGTCGAGCCGGCCATCTGG
TCACCACATGTCTTGTTGCGTAGCATAACGTAGTCGATGTCCAGAAAGCC
CTGCTGCAGCGCCTGTTCGATGTTGTCGTTGTACTCCGGCCGCTTG

BS10043.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-PA 1116 CG17746-RA 237..1116 896..17 4400 100 Minus
CG17746-PB 1116 CG17746-RB 237..1116 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-RB 1694 CG17746-RB 458..1337 896..17 4400 100 Minus
CG17746-RA 1577 CG17746-RA 483..1362 896..17 4400 100 Minus
Ppm1-RA 1422 CG12169-RA 621..1038 689..275 380 74.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3237162..3237666 17..521 2525 100 Plus
3L 28110227 3L 3237742..3238076 520..854 1675 100 Plus
3L 28110227 3L 582009..582426 689..275 325 73 Minus
3L 28110227 3L 3238611..3238657 850..896 235 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:58:34 has no hits.

BS10043.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:33 Download gff for BS10043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-PA 237..1116 17..896 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:06 Download gff for BS10043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-PB 237..1116 17..896 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:47:32 Download gff for BS10043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 483..1370 10..896 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:46 Download gff for BS10043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 483..1370 10..896 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:46 Download gff for BS10043.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3237742..3238072 520..850 100 <- Plus
3L 3238612..3238657 851..896 100   Plus
3L 3237154..3237664 10..519 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:47:32 Download gff for BS10043.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3237154..3237664 10..519 99 <- Plus
arm_3L 3237742..3238072 520..850 100 <- Plus
arm_3L 3238612..3238657 851..896 100   Plus

BS10043.5prime Sequence

902 bp (814 high quality bases) assembled on 2006-04-19

> BS10043.5prime
GAAGTTATCAGTCGACATGGGTCAGACTCTATCGGAACCGGTGACCGCCA
AGGAGTCAGCGTACTGCCAGAACGCCGCCTACCGCGTGGGCAGCTCCTGC
ATGCAGGGGTGGCGCATCAACATGGAGGACTCGCACACCCACATCCTCTC
GCTGCCGGACGATCCGGGAGCGGCATTCTTCGCCGTCTACGACGGGCACG
GAGGCGCCACGGTGGCCCAGTACGCCGGCAAGCACCTGCACAAGTACGTT
CTCAAGCGGCCGGAGTACAACGACAACATCGAACAGGCGCTGCAGCAGGG
CTTTCTGGACATCGACTACGTTATGCTACGCAACAAGACATGTGGTGACC
AGATGGCCGGCTCGACTGCCGTAGTTGTTTTGGTAAAGGACAACAAGCTT
TATTGCGCCAACGCAGGCGACTCGCGCGCCATTGCCTGCGTGAACGGACA
ACTGGAGGTCCTGTCGCTGGACCACAAGCCCAATAACGAGGCGGAGTCCA
AGCGGATCATCCAAGGCGGCGGCTGGGTTGAGTTCAATCGCGTCAACGGC
AATCTTGCGCTTTCCCGCGCCCTCGGTGACTATGTATTCAAGCATGAGAA
CAAAAAACCGGAAGATCAAATCGTCACAGCCTTCCCGGACGTGGAGACGC
GGAAAATCATGGACGATTGGGAATTCATCGTGCTGGCCTGCGATGGCATT
TGGGATGTAATGAGCAACGCGGAAGTGCTCGAGTTCTGTCGCACGCGCAT
CGGCATGGGCATGTTTCCGGAGGAGATCTGCGAAGAGCTGATGAATCACT
GCCTAGCACCCGACTGCCCAATGGGAGGCCTCGGCGGCGACAATATGACC
GTGGTGCTGGTGTGCCTGCTGCACGGCCGTCCCTACAGCGATCTGATAGC
CC

BS10043.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-PA 1116 CG17746-RA 1..886 17..902 4405 99.8 Plus
CG17746-PB 1116 CG17746-RB 1..886 17..902 4405 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-RB 1694 CG17746-RB 222..1107 17..902 4415 99.9 Plus
CG17746-RA 1577 CG17746-RA 247..1132 17..902 4415 99.9 Plus
Ppm1-RA 1422 CG12169-RA 175..1038 17..874 535 72.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3237742..3238076 629..295 1675 100 Minus
3L 28110227 3L 3238611..3238893 299..17 1415 100 Minus
3L 28110227 3L 3237392..3237666 902..628 1360 99.6 Minus
3L 28110227 3L 581563..582426 17..874 450 70.9 Plus
Blast to na_te.dros performed on 2015-02-12 06:28:35 has no hits.

BS10043.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:34 Download gff for BS10043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-PA 1..886 17..902 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:07 Download gff for BS10043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-PB 1..886 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:37:36 Download gff for BS10043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 236..1132 6..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:15:13 Download gff for BS10043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 236..1132 6..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:15:13 Download gff for BS10043.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3237392..3237664 630..902 99 <- Minus
3L 3237742..3238072 299..629 100 <- Minus
3L 3238612..3238904 6..298 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:37:36 Download gff for BS10043.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3238612..3238904 6..298 98   Minus
arm_3L 3237392..3237664 630..902 99 <- Minus
arm_3L 3237742..3238072 299..629 100 <- Minus

BS10043.complete Sequence

1148 bp (1148 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636538

> BS10043.complete
GAAGTTATCAGTCGACATGGGTCAGACTCTATCGGAACCGGTGACCGCCA
AGGAGTCAGCGTACTGCCAGAACGCCGCCTACCGCGTGGGCAGCTCCTGC
ATGCAGGGGTGGCGCATCAACATGGAGGACTCGCACACCCACATCCTCTC
GCTGCCGGACGATCCGGGAGCGGCATTCTTCGCCGTCTACGACGGGCACG
GAGGCGCCACGGTGGCCCAGTACGCCGGCAAGCACCTGCACAAGTACGTT
CTCAAGCGGCCGGAGTACAACGACAACATCGAACAGGCGCTGCAGCAGGG
CTTTCTGGACATCGACTACGTTATGCTACGCAACAAGACATGTGGTGACC
AGATGGCCGGCTCGACTGCCGTAGTTGTTTTGGTAAAGGACAACAAGCTT
TATTGCGCCAACGCAGGCGACTCGCGCGCCATTGCCTGCGTGAACGGACA
ACTGGAGGTCCTGTCGCTGGACCACAAGCCCAATAACGAGGCGGAGTCCA
AGCGGATCATCCAAGGCGGCGGCTGGGTTGAGTTCAATCGCGTCAACGGC
AATCTTGCGCTTTCCCGCGCCCTCGGTGACTATGTATTCAAGCATGAGAA
CAAAAAACCGGAAGATCAAATCGTCACAGCCTTCCCGGACGTGGAGACGC
GGAAAATCATGGACGATTGGGAATTCATCGTGCTGGCCTGCGATGGCATT
TGGGATGTAATGAGCAACGCGGAAGTGCTCGAGTTCTGTCGCACGCGCAT
CGGCATGGGCATGTTTCCGGAGGAGATCTGCGAAGAGCTGATGAATCACT
GCCTAGCACCCGACTGCCAAATGGGAGGCCTCGGCGGCGACAATATGACC
GTGGTGCTGGTGTGCCTGCTGCACGGCCGTCCCTACAGCGATCTGATAGC
CCGCTGCCGAAATGGCAGCCAGGCGACTAACAATGATCAAGAGGAAGCCG
GCGACGCGACGAAGGATGAAGTCGCAAAGGACGAAGCGGAGGCGGAAACC
GATACCGAAACGGAAACGCAAACCAAACCCTGCCAGAAGCAATCCAATTC
CGGTCCCATGGACGACGAGGTGAAGATGGCGTCGCATCTAAACAAGATGG
CAGCGATCGAAAGCCACTATATATACGATTAAAAGCTTTCTAGACCAT

BS10043.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-RB 1116 CG17746-PB 1..1116 17..1132 5580 100 Plus
CG17746-RA 1116 CG17746-PA 1..1116 17..1132 5580 100 Plus
Ppm1-RA 1059 CG12169-PA 1..864 17..874 465 71.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-RB 1694 CG17746-RB 222..1337 17..1132 5580 100 Plus
CG17746-RA 1577 CG17746-RA 247..1362 17..1132 5580 100 Plus
Ppm1-RA 1422 CG12169-RA 175..1038 17..874 465 71.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3237162..3237666 1132..628 2525 100 Minus
3L 28110227 3L 3237742..3238076 629..295 1675 100 Minus
3L 28110227 3L 3238611..3238893 299..17 1415 100 Minus
3L 28110227 3L 581563..582426 17..874 465 71.1 Plus
Blast to na_te.dros performed on 2014-11-27 08:36:01 has no hits.

BS10043.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:33 Download gff for BS10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG17746-RB 1..1116 17..1132 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:15 Download gff for BS10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG17746-RB 160..1294 6..1139 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:06 Download gff for BS10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 247..1360 17..1130 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:33 Download gff for BS10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG17746-RB 160..1294 6..1139 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:58 Download gff for BS10043.complete
Subject Subject Range Query Range Percent Splice Strand
CG17746-RA 247..1360 17..1130 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:58 Download gff for BS10043.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3238612..3238893 17..298 100   Minus
3L 3237742..3238072 299..629 100 <- Minus
3L 3237164..3237664 630..1130 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:06 Download gff for BS10043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3237164..3237664 630..1130 100 <- Minus
arm_3L 3237742..3238072 299..629 100 <- Minus
arm_3L 3238612..3238893 17..298 100   Minus

BS10043.pep Sequence

Translation from 16 to 1131

> BS10043.pep
MGQTLSEPVTAKESAYCQNAAYRVGSSCMQGWRINMEDSHTHILSLPDDP
GAAFFAVYDGHGGATVAQYAGKHLHKYVLKRPEYNDNIEQALQQGFLDID
YVMLRNKTCGDQMAGSTAVVVLVKDNKLYCANAGDSRAIACVNGQLEVLS
LDHKPNNEAESKRIIQGGGWVEFNRVNGNLALSRALGDYVFKHENKKPED
QIVTAFPDVETRKIMDDWEFIVLACDGIWDVMSNAEVLEFCRTRIGMGMF
PEEICEELMNHCLAPDCQMGGLGGDNMTVVLVCLLHGRPYSDLIARCRNG
SQATNNDQEEAGDATKDEVAKDEAEAETDTETETQTKPCQKQSNSGPMDD
EVKMASHLNKMAAIESHYIYD*

BS10043.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17746-PB 371 CG17746-PB 1..371 1..371 1982 100 Plus
CG17746-PA 371 CG17746-PA 1..371 1..371 1982 100 Plus
Ppm1-PA 352 CG12169-PA 1..299 1..297 1110 68.9 Plus
CG6036-PA 371 CG6036-PA 5..293 1..295 505 39.6 Plus
alph-PF 332 CG1906-PF 1..282 1..282 457 38.2 Plus