Clone Sequence Records
BS10044.complete Sequence
1931 bp assembled on 2010-02-11
GenBank Submission: KX802927
> BS10044.complete
GAAGTTATCAGTCGACATGAGTGCATCGACGAGCACGTCGACGGCGGCGT
CCCAGGACGCCTGCTACATATCGCTCCTTGGCCTGGCGGAGTACTTCCGC
ACCTCGCAGCCGCCGAACATCAAGAAATGCATCCAGTGTCTTCAAGCCCT
GTTCACATTTATGCCGCCCTCGAAGGTCGAGGCGCGGACACATTTGCAGA
TGGGCCAGATCCTGATGGCCTACACTAAGAACATCGATCTGGCGCGCCAG
CATTTGGAGAAGGCGTGGAGCATATCCGAACCGCTGCCCAATTTCGACGT
TAAGTTCGACACCGCCTCGCTGCTGGCCCAACTGCATCTGCAGACGGACA
GAAACTCGCATCAGGCCAAGGCGATGCTCCGGCGGGCCGTGGAACTGTCG
CAAAACAACGTCTATTGGCACTGCAAGCTGCTGCTCCAGCTGGCCCAAAT
ACATGCCAGCGATCGCGAGTACTCGCTGGCCTCCGAACTGCTGGCCGTGG
GCGCGGAAAGTGCCGACGAGGCGAGCGCCACGTACCTGAAAGTGCTCTTC
CTGCTCTCGCGCGCCATGATCCTTATGATCGAGCGCAAGACCAACGACGT
GCTCGCCCTGCTCAACTCCGCCGGCCAAATCATTGACAACAACATACCCA
ATCCACACCAGAAGGAGTACCTGAAGGTGTTTTTCCTGGTGCTACAGGTG
TGCTACTACCTGGCCCTCGGGCAGGTAAAAACGGTGAAGCCTAGTCTCAA
ACAGCTGCAGATGTCCATACAAACGATAATGGCGCCAAATTGGCCTTCGG
ATGAGGCGATTTTCGGGGCAAATCAACTCGAGATGTTTGTGTGGCTGCCC
AAGGAGCAGCTGTACGTCCTGGTCTATCTGGTCACTGTCTCCCACTCAAT
GATGGCGGGCTACATGGACAAAGCACAAAAGTACACGGAAAAAGCACTCA
CCCAGATCGAAAAACTTAAGCAACAGGAGGACAAACCCATTCTATCCGTA
TTCAAGGTGATTCTGCTGGAGCACATTGTGATGTGCCGCATGGTGATGGG
CAACCGGGAACTGGCTATCCGGGAAATAGCAGCCGCGAGAGACGTTTGCA
TGGCCGCTCCGCAACGCAGCCTGCTACGGCGACACTCGGCTCAGCTGCAC
TGCCTCATCGGGCTCTACTCCATGTCCACCAACCTCTTTGAGCATGCGGA
GAGGCAGTTCGTCGTGTGCGTGAGTGAGACCAGCGAGCGAGACCTGAAAC
TGTTTGCCAACCTCAACCTGGCGATCATTTATCTGCGCACCAAGCGGGAC
ACGGACCTCAAGCAAATCCTGGATGCCGTCTCAACGGAAAACACGCACAC
GTATAGCAGTCAAGCGCTGATGGGAGGCTTCTACTACGTCCAGGGACTGC
ATGCTTTTCACAAAAATAGCTTCCACGAGGCGAAACGCTTTCTGCGTGAA
ACTCTGAAAATGGCCAACGCCGAAGACCTCAACCGACTGACCAGCTGCTC
GTTGGTTTTGCTATCGCACGTCTTTCTCAGCATCGGAAACTCAAAGGAAA
GCATGAACATGGTGACGCCGGCCATGCAACTGGCCAGTAAGATACCCGAC
ATCCACGTCCAGCTGTGGGGATCGGCAATACTAAAGGACCTGCATCGTAT
GTCAAAGGATGTGCAGCATGAAAAAGATGCTTATGCTAACCACGTTAAAT
ACTCGGAGAACCTGATTGCAGACCAGCGCAAGTGCGTCCAAAGTGCGCAT
CACGAACTCGTCAACTGGTTCCAGGGCGATCCGCCAGTGACGAGTGGTCC
GCCGGCTGCTCCCGTCCTGCTCATGCCAGAGTCCTCCGTTACAGCCTCAG
TCCCCGTCATCGCCTCCACATCGACAGCCATGCAGCCGGCGGGGCAATAC
GGTCAGTTCTACTAGAAGCTTTCTAGACCAT
BS10044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-RA | 1899 | CG4203-PA | 1..1899 | 17..1915 | 9495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-RA | 2086 | CG4203-RA | 93..1995 | 13..1915 | 9500 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15209296..15210717 | 13..1434 | 7095 | 99.9 | Plus |
| 3R | 32079331 | 3R | 15210776..15211256 | 1435..1915 | 2405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:13:59 has no hits.
BS10044.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-11 10:12:16 Download gff for
BS10044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 95..1993 | 17..1915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:45 Download gff for
BS10044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 97..1995 | 17..1915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:36 Download gff for
BS10044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 95..1993 | 17..1915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:45 Download gff for
BS10044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 97..1995 | 17..1915 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:45 Download gff for
BS10044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15209300..15210717 | 17..1434 | 100 | -> | Plus |
| 3R | 15210776..15211256 | 1435..1915 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:45 Download gff for
BS10044.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11035022..11036439 | 17..1434 | 100 | -> | Plus |
| arm_3R | 11036498..11036978 | 1435..1915 | 100 | | Plus |
BS10044.3prime Sequence
957 bp (807 high quality bases) assembled on 2006-04-19
> BS10044.3prime
ATGGTCTAGAAAGCTTCTAGTAGAACTGACCGTATTGCCCCGCCGGCTGC
ATGGCTGTCGATGTGGAGGCGATGACGGGGACTGAGGCTGTAACGGAGGA
CTCTGGCATGAGCAGGACGGGAGCAGCCGGCGGACCACTCGTCACTGGCG
GATCGCCCTGGAACCAGTTGACGAGTTCGTGATGCGCACTTTGGACGCAC
TTGCGCTGGTCTGCAATCAGGTTCTCCGAGTATTTAACGTGGTTAGCATA
AGCATCTTTTTCATGCTGCACATCCTTTGACATACGATGCAGGTCCTTTA
GTATTGCCGATCCCCACAGCTGGACGTGGATGTCGGGTATCTTACTGGCC
AGTTGCATGGCCGGCGTCACCATGTTCATGCTTTCCTTTGAGTTTCCGAT
GCTGAGAAAGACGTGCGATAGCAAAACCAACGAGCAGCTGGTCAGTCGGT
TGAGGTCTTCGGCGTTGGCCATTTTCAGAGTTTCACGCAGAAAGCGTTTC
GCCTCGTGGAAGCTATTTTTGTGAAAAGCATGCAGTCCCTGGACGTAGTA
GAAGCCTCCCATCAGCGCTTGACTGCTATACGTGTGCGTGTTTTCCGTTG
AGACGGCATCCAGGATTTGCTTGAGGTCCGTGTCCCGCTTGGTGCGCAGA
TAAATGATCGCCAGGTTGAGGTTGGCAAACAGTTTCAGGTCTCGCTCGCT
GGTCTCACTCACGCACACGACGAACTGCCTCTCCGCATGCTCAAAGAGGT
TGGTGGACATGGAGTAGAGCCCGATGAGGCAGTGCAGCTGAGCCGAGTGT
CGCCGTAGCAGGCTGCGTTGCGGAGCGGCCATGCAAACGTCTCTCGCGGC
TGCTATTTCCGGATAGCCAGTTCCCGGTTGCCCATCACCATGCGGCACAT
CACAATGTGCTCCAGCAGAATCACCTTTGATACNGATAGAATGGGTTTGT
CCTCCTG
BS10044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-PA | 1899 | CG4203-RA | 1056..1899 | 860..17 | 4220 | 100 | Minus |
| CG4203-PA | 1899 | CG4203-RA | 958..1056 | 957..859 | 426 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-RA | 2086 | CG4203-RA | 1054..1995 | 957..17 | 4644 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15210776..15211256 | 497..17 | 2405 | 100 | Minus |
| 3R | 32079331 | 3R | 15210257..15210717 | 957..498 | 2214 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:19:16 has no hits.
BS10044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:35 Download gff for
BS10044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-PA | 958..1899 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:09 Download gff for
BS10044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-PA | 958..1899 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:18 Download gff for
BS10044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 1054..1995 | 17..957 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:01 Download gff for
BS10044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 1054..1995 | 17..957 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:01 Download gff for
BS10044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15210257..15210717 | 498..957 | 99 | -> | Minus |
| 3R | 15210776..15211256 | 17..497 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:18 Download gff for
BS10044.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11035979..11036439 | 498..957 | 99 | -> | Minus |
| arm_3R | 11036498..11036978 | 17..497 | 100 | | Minus |
BS10044.5prime Sequence
893 bp (800 high quality bases) assembled on 2006-04-19
> BS10044.5prime
GAAGTTATCAGTCGACATGAGTGCATCGACGAGCACGTCGACGGCGGCGT
CCCAGGACGCCTGCTACATATCGCTCCTTGGCCTGGCGGAGTACTTCCGC
ACCTCGCAGCCGCCGAACATCAAGAAATGCATCCAGTGTCTTCAAGCCCT
GTTCACATTTATGCCGCCCTCGAAGGTCGAGGCGCGGACACATTTGCAGA
TGGGCCAGATCCTGATGGCCTACACTAAGAACATCGATCTGGCGCGCCAG
CATTTGGAGAAGGCGTGGAGCATATCCGAACCGCTGCCCAATTTCGACGT
TAAGTTCGACACCGCCTCGCTGCTGGCCCAACTGCATCTGCAGACGGACA
GAAACTCGCATCAGGCCAAGGCGATGCTCCGGCGGGCCGTGGAACTGTCG
CAAAACAACGTCTATTGGCACTGCAAGCTGCTGCTCCAGCTGGCCCAAAT
ACATGCCAGCGATCGCGAGTACTCGCTGGCCTCCGAACTGCTGGCCGTGG
GCGCGGAAAGTGCCGACGAGGCGAGCGCCACGTACCTGAAAGTGCTCTTC
CTGCTCTCGCGCGCCATGATCCTTATGATCGAGCGCAAGACCAACGACGT
GCTCGCCCTGCTCAACTCCGCCGGCCAAATCATTGACAACAACATACCCA
ATCCACACCAGAAGGAGTACCTGAAGGTGTTTTTCCTGGTGCTACAGGTG
TGCTACTACCTGGCCCTCGGGCAGGTAAAAACGGTGAAGCCTAGTCTCAA
ACAGCTGCAGATGTCCATACAAACGATAATGGCGCCAAATTGGCCTTCGG
ATGAAGCGATTTTCGGGGCAAATCAACTCGAGATGTTTGTGTGGCTGCCC
AGGAGCAGCTGTACGTCCTGGTCTATCTGGTCACTGTCTCCCA
BS10044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-PA | 1899 | CG4203-RA | 1..835 | 17..851 | 4150 | 99.8 | Plus |
| CG4203-PA | 1899 | CG4203-RA | 836..878 | 851..893 | 215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-RA | 2086 | CG4203-RA | 93..974 | 13..893 | 4355 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15209296..15210177 | 13..893 | 4330 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:13:00 has no hits.
BS10044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:36 Download gff for
BS10044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-PA | 1..877 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:12 Download gff for
BS10044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-PA | 1..877 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:59:15 Download gff for
BS10044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 89..973 | 8..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:34:41 Download gff for
BS10044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4203-RA | 89..973 | 8..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:34:41 Download gff for
BS10044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15209292..15210176 | 8..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:59:15 Download gff for
BS10044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11035014..11035898 | 8..892 | 99 | | Plus |
BS10044.pep Sequence
Translation from 16 to 1914
> BS10044.pep
MSASTSTSTAASQDACYISLLGLAEYFRTSQPPNIKKCIQCLQALFTFMP
PSKVEARTHLQMGQILMAYTKNIDLARQHLEKAWSISEPLPNFDVKFDTA
SLLAQLHLQTDRNSHQAKAMLRRAVELSQNNVYWHCKLLLQLAQIHASDR
EYSLASELLAVGAESADEASATYLKVLFLLSRAMILMIERKTNDVLALLN
SAGQIIDNNIPNPHQKEYLKVFFLVLQVCYYLALGQVKTVKPSLKQLQMS
IQTIMAPNWPSDEAIFGANQLEMFVWLPKEQLYVLVYLVTVSHSMMAGYM
DKAQKYTEKALTQIEKLKQQEDKPILSVFKVILLEHIVMCRMVMGNRELA
IREIAAARDVCMAAPQRSLLRRHSAQLHCLIGLYSMSTNLFEHAERQFVV
CVSETSERDLKLFANLNLAIIYLRTKRDTDLKQILDAVSTENTHTYSSQA
LMGGFYYVQGLHAFHKNSFHEAKRFLRETLKMANAEDLNRLTSCSLVLLS
HVFLSIGNSKESMNMVTPAMQLASKIPDIHVQLWGSAILKDLHRMSKDVQ
HEKDAYANHVKYSENLIADQRKCVQSAHHELVNWFQGDPPVTSGPPAAPV
LLMPESSVTASVPVIASTSTAMQPAGQYGQFY*
BS10044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4203-PA | 632 | CG4203-PA | 1..632 | 1..632 | 3224 | 100 | Plus |
