Clone Sequence Records
BS10046.3prime Sequence
938 bp (772 high quality bases) assembled on 2006-04-19
> BS10046.3prime
ATGGTCTAGAAAGCTTTTATGCATGTGCGCCGCCTTTGGGATTAGATAGA
AGATCCATGAAGTCCTTATGAAACGACGACATCTCTCGCACGAAAAATTT
CATCAGTTTGCATTTTTTCCTCTCTATGACCAGCTTTTCCTCCTCTATTT
CCATAATTCTGGCAGCTCTTTGACGCTTAGCAATTTTCATGTCCTCGGTC
TTGGAATTCTGTTGATCGAGCTCGTCTTCATAGTTTTCCTGGGAATGAAC
TGTGGACGACTCTTCGATTTCCCTGATTATGTTATCCTTCAGAATACGCA
GTTCATCCACGTCTTCTTGTGCTTCATCCGCATATTCGTTCATATCGAAG
CTATCCCCTTCTCCAGGGTGTACTTTTTGGGACCTTAAGTAGTTCCTATC
TATCAATGGTTCGTCAAGTTGACTGCCAAATGAATTGTGTTCGCTGGTCG
TATTGGGTGCACTTCCAGACTTATCCAGAGGCATATTGTCAATTATGTTA
CGATCGGAACTAAATATCATCTTCATGGTCTCGAAGTATTCCCACTGGGA
TTTGTGTCCAGTTGTCTTTTCCATGTGCGATTCTCGCCGATACTGTTGGC
CCATGTCATCAATTTTGTTCTTTATCTCCGTGAACGTGAAACCCAGTGAC
TTCATCTCGCCCGTCATTTTCCAGATAACCTGGACCCGCTTGCGTGAGTC
TCGCAAATCGACGCAGTGCCTTGCCCAAAGCTCGAGCAGCAGTTCGACCG
CGTGGAATGACCACTCGGACGGCTGAAAGGAGTTCCAGCTCAGGCGGCGC
TCCAACGAATCGTCTAGTTTAGGGGGATGGATTTCCGCGATCCCCTCCTC
GCACAGTTCCTCGGTACGCAGGTAGTCCACATGGCACTTGTGGGTGCGCA
GATTGGACGTGTTGAAGGATCGCATGACGCGCTTGCAG
BS10046.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17153-PA | 1107 | CG17153-RA | 186..1107 | 938..17 | 4610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp-RA | 1412 | CG17153-RA | 244..1166 | 938..16 | 4615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12118971..12119543 | 588..16 | 2865 | 100 | Minus |
3L | 28110227 | 3L | 12118688..12118912 | 811..587 | 1125 | 100 | Minus |
3L | 28110227 | 3L | 12118500..12118627 | 938..811 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:13:50 has no hits.
BS10046.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:39 Download gff for
BS10046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-PA | 186..1107 | 17..938 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:16 Download gff for
BS10046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-PA | 186..1107 | 17..938 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:25:09 Download gff for
BS10046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 244..1179 | 5..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:47:33 Download gff for
BS10046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 244..1179 | 5..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:47:33 Download gff for
BS10046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12118500..12118626 | 812..938 | 100 | -> | Minus |
3L | 12118688..12118911 | 588..811 | 100 | -> | Minus |
3L | 12118972..12119556 | 5..587 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:25:09 Download gff for
BS10046.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12111600..12111726 | 812..938 | 100 | -> | Minus |
arm_3L | 12111788..12112011 | 588..811 | 100 | -> | Minus |
arm_3L | 12112072..12112656 | 5..587 | 99 | | Minus |
BS10046.5prime Sequence
923 bp (776 high quality bases) assembled on 2006-04-19
> BS10046.5prime
GAAGTTATCAGTCGACATGATTGAGGCCCGCACGATGCAGGACGTATCAA
AATTCGAATCCAACCAGGTGATCTCGGCGAAGGTGCTCCGCGGCGAGTAC
CGGCTACTACGACGCAAGCAGCGCGGCTCCGTGTGGAAGGTGTATCGGGA
AATCGTGCGCACCGATGGTGCCATAATCAATGGACTCTACTTCTGCACGG
GCTGCAAGCGCGTCATGCGATCCTTCAACACGTCCAATCTGCGCACCCAC
AAGTGCCATGTGGACTACCTGCGTACCGAGGAACTGTGCGAGGAGGGGAT
CGCGGAAATCCATCCCCCTAAACTAGACGATTCGTTGGAGCGCCGCCTGA
GCTGGAACTCCTTTCAGCCGTCCGAGTGGTCATTCCACGCGGTCGAACTG
CTGCTCGAGCTTTGGGCAAGGCACTGCGTCGATTTGCGAGACTCACGCAA
GCGGGTCCAGGTTATCTGGAAAATGACGGGCGAGATGAAGTCACTGGGTT
TCACGTTCACGGAGATAAAGAACAAAATTGATGACATGGGCCAACAGTAT
CGGCGAGAATCGCACATGGAAAAGACAACTGGACACAAATCCCAGTGGGA
ATACTTCGAGACCATGAAGATGATATTTAGTTCCGATCGTAACATAATTG
ACAATATGCCTCTGGATAAGTCTGGAAGTGCACCCAATACGACCAGCGAA
CACAATTCATTTGGCAGTCAACTTGACGAACCATTGATAGATAGGAACTA
CTTAAGGTCCCAAAAAGTACACCCTGGAGAAGGGGATAGCTTCGATATGA
ACGAATATGCGGATGAAGCACAAGAAGACGTGGATGAACTGCGTATTCTG
AAGGATAACATAATCAGGGAAATCGAAGAGTCGTCAACAGTTCATTCCCA
GGAAAACTATGAAGACGAGCTCG
BS10046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17153-PA | 1107 | CG17153-RA | 1..907 | 17..923 | 4510 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp-RA | 1412 | CG17153-RA | 55..965 | 13..923 | 4540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12118971..12119342 | 552..923 | 1845 | 99.7 | Plus |
3L | 28110227 | 3L | 12118311..12118627 | 13..329 | 1585 | 100 | Plus |
3L | 28110227 | 3L | 12118688..12118912 | 329..553 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:08:49 has no hits.
BS10046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:40 Download gff for
BS10046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:17 Download gff for
BS10046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:26:09 Download gff for
BS10046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 55..965 | 13..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:40:03 Download gff for
BS10046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 55..965 | 13..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:40:03 Download gff for
BS10046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12118311..12118626 | 13..328 | 100 | -> | Plus |
3L | 12118688..12118911 | 329..552 | 100 | -> | Plus |
3L | 12118972..12119342 | 553..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:26:09 Download gff for
BS10046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12111411..12111726 | 13..328 | 100 | -> | Plus |
arm_3L | 12111788..12112011 | 329..552 | 100 | -> | Plus |
arm_3L | 12112072..12112442 | 553..923 | 99 | | Plus |
BS10046.complete Sequence
1139 bp (1139 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636539
> BS10046.complete
GAAGTTATCAGTCGACATGATTGAGGCCCGCACGATGCAGGACGTATCAA
AATTCGAATCCAACCAGGTGATCTCGGCGAAGGTGCTCCGCGGCGAGTAC
CGGCTACTACGACGCAAGCAGCGCGGCTCCGTGTGGAAGGTGTATCGGGA
AATCGTGCGCACCGATGGTGCCATAATCAATGGACTCTACTTCTGCACGG
GCTGCAAGCGCGTCATGCGATCCTTCAACACGTCCAATCTGCGCACCCAC
AAGTGCCATGTGGACTACCTGCGTACCGAGGAACTGTGCGAGGAGGGGAT
CGCGGAAATCCATCCCCCTAAACTAGACGATTCGTTGGAGCGCCGCCTGA
GCTGGAACTCCTTTCAGCCGTCCGAGTGGTCATTCCACGCGGTCGAACTG
CTGCTCGAGCTTTGGGCAAGGCACTGCGTCGATTTGCGAGACTCACGCAA
GCGGGTCCAGGTTATCTGGAAAATGACGGGCGAGATGAAGTCACTGGGTT
TCACGTTCACGGAGATAAAGAACAAAATTGATGACATGGGCCAACAGTAT
CGGCGAGAATCGCACATGGAAAAGACAACTGGACACAAATCCCAGTGGGA
ATACTTCGAGACCATGAAGATGATATTTAGTTCCGATCGTAACATAATTG
ACAATATGCCTCTGGATAAGTCTGGAAGTGCACCCAATACGACCAGCGAA
CACAATTCATTTGGCAGTCAACTTGACGAACCATTGATAGATAGGAACTA
CTTAAGGTCCCAAAAAGTACACCCTGGAGAAGGGGATAGCTTCGATATGA
ACGAATATGCGGATGAAGCACAAGAAGACGTGGATGAACTGCGTATTCTG
AAGGATAACATAATCAGGGAAATCGAAGAGTCGTCCACAGTTCATTCCCA
GGAAAACTATGAAGACGAGCTCGATCAACAGAATTCCAAGACCGAGGACA
TGAAAATTGCTAAGCGTCAAAGAGCTGCCAGAATTATGGAAATAGAGGAG
GAAAAGCTGGTCATAGAGAGGAAAAAATGCAAACTGATGAAATTTTTCGT
GCGAGAGATGTCGTCGTTTCATAAGGACTTCATGGATCTTCTATCTAATC
CCAAAGGCGGCGCACATGCATAAAAGCTTTCTAGACCAT
BS10046.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp-RA | 1107 | CG17153-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp-RA | 1412 | CG17153-RA | 55..1166 | 13..1124 | 5560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12118971..12119543 | 552..1124 | 2865 | 100 | Plus |
3L | 28110227 | 3L | 12118311..12118627 | 13..329 | 1585 | 100 | Plus |
3L | 28110227 | 3L | 12118688..12118912 | 329..553 | 1125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:43:32 has no hits.
BS10046.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:34 Download gff for
BS10046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-RA | 1..1107 | 17..1123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:17 Download gff for
BS10046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-RA | 69..1193 | 13..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:21 Download gff for
BS10046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 59..1163 | 17..1121 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:34 Download gff for
BS10046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17153-RA | 69..1193 | 13..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:00 Download gff for
BS10046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ssp-RA | 59..1163 | 17..1121 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:00 Download gff for
BS10046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12118315..12118626 | 17..328 | 100 | -> | Plus |
3L | 12118688..12118911 | 329..552 | 100 | -> | Plus |
3L | 12118972..12119540 | 553..1121 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:21 Download gff for
BS10046.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12111415..12111726 | 17..328 | 100 | -> | Plus |
arm_3L | 12111788..12112011 | 329..552 | 100 | -> | Plus |
arm_3L | 12112072..12112640 | 553..1121 | 100 | | Plus |
BS10046.pep Sequence
Translation from 16 to 1122
> BS10046.pep
MIEARTMQDVSKFESNQVISAKVLRGEYRLLRRKQRGSVWKVYREIVRTD
GAIINGLYFCTGCKRVMRSFNTSNLRTHKCHVDYLRTEELCEEGIAEIHP
PKLDDSLERRLSWNSFQPSEWSFHAVELLLELWARHCVDLRDSRKRVQVI
WKMTGEMKSLGFTFTEIKNKIDDMGQQYRRESHMEKTTGHKSQWEYFETM
KMIFSSDRNIIDNMPLDKSGSAPNTTSEHNSFGSQLDEPLIDRNYLRSQK
VHPGEGDSFDMNEYADEAQEDVDELRILKDNIIREIEESSTVHSQENYED
ELDQQNSKTEDMKIAKRQRAARIMEIEEEKLVIERKKCKLMKFFVREMSS
FHKDFMDLLSNPKGGAHA*
BS10046.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ssp-PA | 368 | CG17153-PA | 1..368 | 1..368 | 1931 | 100 | Plus |
l(3)j2D3-PA | 391 | CG6801-PA | 154..388 | 121..361 | 270 | 29.4 | Plus |
CG11560-PA | 303 | CG11560-PA | 23..97 | 14..86 | 210 | 54.7 | Plus |
CG34116-PA | 211 | CG34116-PA | 8..84 | 19..91 | 156 | 39.7 | Plus |