Clone BS10046 Report

Search the DGRC for BS10046

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:46
Vector:pDNR-Dual
Associated Gene/Transcriptssp-RA
Protein status:BS10046.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10046.3prime Sequence

938 bp (772 high quality bases) assembled on 2006-04-19

> BS10046.3prime
ATGGTCTAGAAAGCTTTTATGCATGTGCGCCGCCTTTGGGATTAGATAGA
AGATCCATGAAGTCCTTATGAAACGACGACATCTCTCGCACGAAAAATTT
CATCAGTTTGCATTTTTTCCTCTCTATGACCAGCTTTTCCTCCTCTATTT
CCATAATTCTGGCAGCTCTTTGACGCTTAGCAATTTTCATGTCCTCGGTC
TTGGAATTCTGTTGATCGAGCTCGTCTTCATAGTTTTCCTGGGAATGAAC
TGTGGACGACTCTTCGATTTCCCTGATTATGTTATCCTTCAGAATACGCA
GTTCATCCACGTCTTCTTGTGCTTCATCCGCATATTCGTTCATATCGAAG
CTATCCCCTTCTCCAGGGTGTACTTTTTGGGACCTTAAGTAGTTCCTATC
TATCAATGGTTCGTCAAGTTGACTGCCAAATGAATTGTGTTCGCTGGTCG
TATTGGGTGCACTTCCAGACTTATCCAGAGGCATATTGTCAATTATGTTA
CGATCGGAACTAAATATCATCTTCATGGTCTCGAAGTATTCCCACTGGGA
TTTGTGTCCAGTTGTCTTTTCCATGTGCGATTCTCGCCGATACTGTTGGC
CCATGTCATCAATTTTGTTCTTTATCTCCGTGAACGTGAAACCCAGTGAC
TTCATCTCGCCCGTCATTTTCCAGATAACCTGGACCCGCTTGCGTGAGTC
TCGCAAATCGACGCAGTGCCTTGCCCAAAGCTCGAGCAGCAGTTCGACCG
CGTGGAATGACCACTCGGACGGCTGAAAGGAGTTCCAGCTCAGGCGGCGC
TCCAACGAATCGTCTAGTTTAGGGGGATGGATTTCCGCGATCCCCTCCTC
GCACAGTTCCTCGGTACGCAGGTAGTCCACATGGCACTTGTGGGTGCGCA
GATTGGACGTGTTGAAGGATCGCATGACGCGCTTGCAG

BS10046.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17153-PA 1107 CG17153-RA 186..1107 938..17 4610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-RA 1412 CG17153-RA 244..1166 938..16 4615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12118971..12119543 588..16 2865 100 Minus
3L 28110227 3L 12118688..12118912 811..587 1125 100 Minus
3L 28110227 3L 12118500..12118627 938..811 640 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:13:50 has no hits.

BS10046.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:39 Download gff for BS10046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17153-PA 186..1107 17..938 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:16 Download gff for BS10046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17153-PA 186..1107 17..938 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:25:09 Download gff for BS10046.3prime
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 244..1179 5..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:47:33 Download gff for BS10046.3prime
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 244..1179 5..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:47:33 Download gff for BS10046.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12118500..12118626 812..938 100 -> Minus
3L 12118688..12118911 588..811 100 -> Minus
3L 12118972..12119556 5..587 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:25:09 Download gff for BS10046.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12111600..12111726 812..938 100 -> Minus
arm_3L 12111788..12112011 588..811 100 -> Minus
arm_3L 12112072..12112656 5..587 99   Minus

BS10046.5prime Sequence

923 bp (776 high quality bases) assembled on 2006-04-19

> BS10046.5prime
GAAGTTATCAGTCGACATGATTGAGGCCCGCACGATGCAGGACGTATCAA
AATTCGAATCCAACCAGGTGATCTCGGCGAAGGTGCTCCGCGGCGAGTAC
CGGCTACTACGACGCAAGCAGCGCGGCTCCGTGTGGAAGGTGTATCGGGA
AATCGTGCGCACCGATGGTGCCATAATCAATGGACTCTACTTCTGCACGG
GCTGCAAGCGCGTCATGCGATCCTTCAACACGTCCAATCTGCGCACCCAC
AAGTGCCATGTGGACTACCTGCGTACCGAGGAACTGTGCGAGGAGGGGAT
CGCGGAAATCCATCCCCCTAAACTAGACGATTCGTTGGAGCGCCGCCTGA
GCTGGAACTCCTTTCAGCCGTCCGAGTGGTCATTCCACGCGGTCGAACTG
CTGCTCGAGCTTTGGGCAAGGCACTGCGTCGATTTGCGAGACTCACGCAA
GCGGGTCCAGGTTATCTGGAAAATGACGGGCGAGATGAAGTCACTGGGTT
TCACGTTCACGGAGATAAAGAACAAAATTGATGACATGGGCCAACAGTAT
CGGCGAGAATCGCACATGGAAAAGACAACTGGACACAAATCCCAGTGGGA
ATACTTCGAGACCATGAAGATGATATTTAGTTCCGATCGTAACATAATTG
ACAATATGCCTCTGGATAAGTCTGGAAGTGCACCCAATACGACCAGCGAA
CACAATTCATTTGGCAGTCAACTTGACGAACCATTGATAGATAGGAACTA
CTTAAGGTCCCAAAAAGTACACCCTGGAGAAGGGGATAGCTTCGATATGA
ACGAATATGCGGATGAAGCACAAGAAGACGTGGATGAACTGCGTATTCTG
AAGGATAACATAATCAGGGAAATCGAAGAGTCGTCAACAGTTCATTCCCA
GGAAAACTATGAAGACGAGCTCG

BS10046.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17153-PA 1107 CG17153-RA 1..907 17..923 4510 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-RA 1412 CG17153-RA 55..965 13..923 4540 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12118971..12119342 552..923 1845 99.7 Plus
3L 28110227 3L 12118311..12118627 13..329 1585 100 Plus
3L 28110227 3L 12118688..12118912 329..553 1125 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:08:49 has no hits.

BS10046.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:40 Download gff for BS10046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17153-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:17 Download gff for BS10046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17153-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:26:09 Download gff for BS10046.5prime
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 55..965 13..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:40:03 Download gff for BS10046.5prime
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 55..965 13..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:40:03 Download gff for BS10046.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12118311..12118626 13..328 100 -> Plus
3L 12118688..12118911 329..552 100 -> Plus
3L 12118972..12119342 553..923 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:26:09 Download gff for BS10046.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12111411..12111726 13..328 100 -> Plus
arm_3L 12111788..12112011 329..552 100 -> Plus
arm_3L 12112072..12112442 553..923 99   Plus

BS10046.complete Sequence

1139 bp (1139 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636539

> BS10046.complete
GAAGTTATCAGTCGACATGATTGAGGCCCGCACGATGCAGGACGTATCAA
AATTCGAATCCAACCAGGTGATCTCGGCGAAGGTGCTCCGCGGCGAGTAC
CGGCTACTACGACGCAAGCAGCGCGGCTCCGTGTGGAAGGTGTATCGGGA
AATCGTGCGCACCGATGGTGCCATAATCAATGGACTCTACTTCTGCACGG
GCTGCAAGCGCGTCATGCGATCCTTCAACACGTCCAATCTGCGCACCCAC
AAGTGCCATGTGGACTACCTGCGTACCGAGGAACTGTGCGAGGAGGGGAT
CGCGGAAATCCATCCCCCTAAACTAGACGATTCGTTGGAGCGCCGCCTGA
GCTGGAACTCCTTTCAGCCGTCCGAGTGGTCATTCCACGCGGTCGAACTG
CTGCTCGAGCTTTGGGCAAGGCACTGCGTCGATTTGCGAGACTCACGCAA
GCGGGTCCAGGTTATCTGGAAAATGACGGGCGAGATGAAGTCACTGGGTT
TCACGTTCACGGAGATAAAGAACAAAATTGATGACATGGGCCAACAGTAT
CGGCGAGAATCGCACATGGAAAAGACAACTGGACACAAATCCCAGTGGGA
ATACTTCGAGACCATGAAGATGATATTTAGTTCCGATCGTAACATAATTG
ACAATATGCCTCTGGATAAGTCTGGAAGTGCACCCAATACGACCAGCGAA
CACAATTCATTTGGCAGTCAACTTGACGAACCATTGATAGATAGGAACTA
CTTAAGGTCCCAAAAAGTACACCCTGGAGAAGGGGATAGCTTCGATATGA
ACGAATATGCGGATGAAGCACAAGAAGACGTGGATGAACTGCGTATTCTG
AAGGATAACATAATCAGGGAAATCGAAGAGTCGTCCACAGTTCATTCCCA
GGAAAACTATGAAGACGAGCTCGATCAACAGAATTCCAAGACCGAGGACA
TGAAAATTGCTAAGCGTCAAAGAGCTGCCAGAATTATGGAAATAGAGGAG
GAAAAGCTGGTCATAGAGAGGAAAAAATGCAAACTGATGAAATTTTTCGT
GCGAGAGATGTCGTCGTTTCATAAGGACTTCATGGATCTTCTATCTAATC
CCAAAGGCGGCGCACATGCATAAAAGCTTTCTAGACCAT

BS10046.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:33
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-RA 1107 CG17153-PA 1..1107 17..1123 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-RA 1412 CG17153-RA 55..1166 13..1124 5560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12118971..12119543 552..1124 2865 100 Plus
3L 28110227 3L 12118311..12118627 13..329 1585 100 Plus
3L 28110227 3L 12118688..12118912 329..553 1125 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:43:32 has no hits.

BS10046.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:34 Download gff for BS10046.complete
Subject Subject Range Query Range Percent Splice Strand
CG17153-RA 1..1107 17..1123 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:17 Download gff for BS10046.complete
Subject Subject Range Query Range Percent Splice Strand
CG17153-RA 69..1193 13..1135 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:21 Download gff for BS10046.complete
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 59..1163 17..1121 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:34 Download gff for BS10046.complete
Subject Subject Range Query Range Percent Splice Strand
CG17153-RA 69..1193 13..1135 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:00 Download gff for BS10046.complete
Subject Subject Range Query Range Percent Splice Strand
ssp-RA 59..1163 17..1121 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:00 Download gff for BS10046.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12118315..12118626 17..328 100 -> Plus
3L 12118688..12118911 329..552 100 -> Plus
3L 12118972..12119540 553..1121 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:21 Download gff for BS10046.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12111415..12111726 17..328 100 -> Plus
arm_3L 12111788..12112011 329..552 100 -> Plus
arm_3L 12112072..12112640 553..1121 100   Plus

BS10046.pep Sequence

Translation from 16 to 1122

> BS10046.pep
MIEARTMQDVSKFESNQVISAKVLRGEYRLLRRKQRGSVWKVYREIVRTD
GAIINGLYFCTGCKRVMRSFNTSNLRTHKCHVDYLRTEELCEEGIAEIHP
PKLDDSLERRLSWNSFQPSEWSFHAVELLLELWARHCVDLRDSRKRVQVI
WKMTGEMKSLGFTFTEIKNKIDDMGQQYRRESHMEKTTGHKSQWEYFETM
KMIFSSDRNIIDNMPLDKSGSAPNTTSEHNSFGSQLDEPLIDRNYLRSQK
VHPGEGDSFDMNEYADEAQEDVDELRILKDNIIREIEESSTVHSQENYED
ELDQQNSKTEDMKIAKRQRAARIMEIEEEKLVIERKKCKLMKFFVREMSS
FHKDFMDLLSNPKGGAHA*

BS10046.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
ssp-PA 368 CG17153-PA 1..368 1..368 1931 100 Plus
l(3)j2D3-PA 391 CG6801-PA 154..388 121..361 270 29.4 Plus
CG11560-PA 303 CG11560-PA 23..97 14..86 210 54.7 Plus
CG34116-PA 211 CG34116-PA 8..84 19..91 156 39.7 Plus