Clone Sequence Records
BS10047.3prime Sequence
873 bp (807 high quality bases) assembled on 2006-04-19
> BS10047.3prime
ATGGTCTAGAAAGCTTTTAATTGCGCAATTGGGCAGATGATTTCGGCAGA
GATTGAATACGCTGGCGACGCTTTGCTTCGAACTCCGTAGCCAGCTGCCA
TGTTTCTTTGTCCAACGTATCCTTCCCCCGGGCGATGCCCAGCAGCCGTG
AGAGGACCAGCAATCCATGCAGATCATCGGCATTACTTTTGACATTAGCT
TTACGCATGTCCACGAAATCCTGCTGGATCATTTCAGTGTGCTCCTCGCT
CACGTTGAAGCCGCTAGTGCGCGCTGTGGTCAAGTACTTGCGAAACTGCT
GCAGACGTGATGGCTGCAGATAGTGGTGGGCTGCCTTTAGAGATTCATCA
ACAAGTTCCACGGCCTTAGAATCGGCATTAATGGGCAGCACAAAATCGCT
CGGCAACATACTTCGCCCTTCACTGAGCACGAGAACTGGAATATTTGCTT
GGTAGTCTATTTGGTAATACTGAAAGTCGCACTTCAGTTCCTGATTATTG
ATCAAGTGCGCTAAATGCTGAACGGCATGAACACCATTGGCCTCCAGCTT
GCCCTGTTGCATGCACGTCTCGTCGAGCACCAAATGCGTATGGGGAGCCA
ACTGTAGTACGCCGGAAACCAGCTTGTTTGTCTCATAATCCTTCTTTGGG
GCAAAGGCTGCCGTGTTTAGTGTGACGAGAGTCATGGGCATGTAATGGCT
GGCCGGCAGTAGCAGCTCCAGAATTTGATACAACTTGGTTGCATACGCCT
CACAATTCTTAGGGAGATTACAAAGGTTAAGGGCGAACTTGCCGATGCTC
TGCATCTCAGAACGACTGTAGACCGTAGATATTAGGTGGGAGAGCAAATA
CTCGGCAGCCAGATCGTCATCAA
BS10047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3430-PA | 1818 | CG3430-RA | 962..1818 | 873..17 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3430-RA | 1973 | CG3430-RA | 1052..1908 | 873..17 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6958655..6959039 | 401..17 | 1925 | 100 | Minus |
2L | 23513712 | 2L | 6958346..6958589 | 644..401 | 1220 | 100 | Minus |
2L | 23513712 | 2L | 6958059..6958288 | 873..644 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:54:12 has no hits.
BS10047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:41 Download gff for
BS10047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-PA | 964..1818 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:19 Download gff for
BS10047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-PA | 964..1818 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:36:51 Download gff for
BS10047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-RA | 1054..1911 | 14..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:56 Download gff for
BS10047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-RA | 1054..1911 | 14..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:56 Download gff for
BS10047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6958061..6958287 | 645..871 | 100 | -> | Minus |
2L | 6958346..6958589 | 401..644 | 100 | -> | Minus |
2L | 6958656..6959042 | 14..400 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:36:51 Download gff for
BS10047.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6958061..6958287 | 645..871 | 100 | -> | Minus |
arm_2L | 6958346..6958589 | 401..644 | 100 | -> | Minus |
arm_2L | 6958656..6959042 | 14..400 | 99 | | Minus |
BS10047.5prime Sequence
970 bp (821 high quality bases) assembled on 2006-04-19
> BS10047.5prime
GAAGTTATCAGTCGACATGCCCTGTGCGATGGAGCTGCCCAGCACGCCCG
ATGAACTGGCCGCCCAGCAAGCGGACAGCGCTGCACTCAAGGACTTGCTC
AAGGATCCCAGTCGTTGGCACTCGATTCCCCTGCTCAACTACACGCCTCT
TCACAAGCTGAAGGATCAGACTCTGGTGCGCTTTCGTGGAATGATCCAGG
ACATGATGGACCCAGAAATCTATCTGGAGCGCTACGAAGTGAAATCCGCC
GACGGCAGCAAACGTGTACAGGAAGGAAAGTACAGGGACTGCTTGAAAAT
AGCCAATGGCGAAGTGATTGACTACAACGCCGATGGAAACGTGCATGGAG
AGAGGCGTACCATGTTCGTGGTCTCTGTGCCTGGTCTGAACGATTGGAGC
AAGGAGCATGAGAAGCTGTGCTGTCCCCAGATCGATTTGGCCAGTCTGGG
TCAATCTCCCAGTTCAGCCAAGAAGCGGACTATTGTAGGCGAAGAAGAAG
CCATGGATGTGGACGTTGCGAGCGAAACAACGTTCAAGCGACCCTGCCTA
AAAGAGATTCAAAAAGATAGCGAGCCAGTCGGCGCCTCCAAATCCTCTGT
TCTTGGGTCTGATTACCTGATTAACTCGCCTCTGCCGGATCGTCCCAGCA
TGGCATGCATGGTAAAGGTTTACGAGGAGTTCGATACCTACCAGCTTAAC
TCGCTGGTCGACTTTGTGGGCTTTCTGTCAGTGGATGCTTCACTAGACGC
CGCTACCCTGGAAATAGACGATTGTGAAAACTTGAGTGAACTGCANGCAG
CTCATCCATCGCCATTTCTTATACCCCGCCTGCATGCCTTCGGAGTCCAG
GTGCTGCCGCATGCCNATCCGCTGCTGGACAAAAGCCTTCGACAGCAACG
GGAATATGTGAGGAGACGTATCCCACCCACCTTGCTGTGCACAAAGATCT
GCGCATGCTTCTTAAACTCT
BS10047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3430-PA | 1818 | CG3430-RA | 1..880 | 17..896 | 4362 | 99.7 | Plus |
CG3430-PA | 1818 | CG3430-RA | 881..955 | 896..970 | 325 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3430-RA | 1973 | CG3430-RA | 91..1045 | 17..970 | 4698 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6957098..6958052 | 17..970 | 4673 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:31:15 has no hits.
BS10047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:42 Download gff for
BS10047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-PA | 1..955 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:21 Download gff for
BS10047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-PA | 1..955 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:59:42 Download gff for
BS10047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-RA | 91..1045 | 17..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:23 Download gff for
BS10047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-RA | 91..1045 | 17..970 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:23 Download gff for
BS10047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6957098..6958052 | 17..970 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:59:42 Download gff for
BS10047.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6957098..6958052 | 17..970 | 99 | | Plus |
BS10047.complete Sequence
1850 bp assembled on 2007-11-30
GenBank Submission: FJ636540
> BS10047.complete
GAAGTTATCAGTCGACATGCCCTGTGCGATGGAGCTGCCCAGCACGCCCG
ATGAACTGGCCGCCCAGCAAGCGGACAGCGCTGCACTCAAGGACTTGCTC
AAGGATCCCAGTCGTTGGCACTCGATTCCCCTGCTCAACTACACGCCTCT
TCACAAGCTGAAGGATCAGACTCTGGTGCGCTTTCGTGGAATGATCCAGG
ACATGATGGACCCAGAAATCTATCTGGAGCGCTACGAAGTGAAATCCGCC
GACGGCAGCAAACGTGTACAGGAAGGAAAGTACAGGGACTGCTTGAAAAT
AGCCAATGGCGAAGTGATTGACTACAACGCCGATGGAAACGTGCATGGAG
AGAGGCGTACCATGTTCGTGGTCTCTGTGCCTGGTCTGAACGATTGGAGC
AAGGAGCATGAGAAGCTGTGCTGTCCCCAGATCGATTTGGCCAGTCTGGG
TCAATCTCCCAGTTCAGCCAAGAAGCGGACTATTGTAGGCGAAGAAGAAG
CCATGGATGTGGACGTTGCGAGCGAAACAACGTTCAAGCGACCCTGCCTA
AAAGAGATTCAAAAAGATAGCGAGCCAGTCGGCGCCTCCAAATCCTCTGT
TCTTGGGTCTGATTACCTGATTAACTCGCCTCTGCCGGATCGTCCCAGCA
TGGCATGCATGGTAAAGGTTTACGAGGAGTTCGATACCTACCAGCTTAAC
TCGCTGGTCGACTTTGTGGGCTTTCTGTCAGTGGATGCTTCACTAGACGC
CGCTACCCTGGAAATAGACGATTGTGAAAACTTGAGTGAACTGCAGGCAG
CTCATCCATCGCCATTTCTTATACCCCGCCTGCATGCCTTCGGAGTCCAG
GTGCTGCCGCATGCCAATCCGCTGCTGGACAAAAGCCTTCGACAGCCAAC
GGAAATATGTGAGGAGACGTATCCAACCCACCTTGCTGTGCACAAAGATC
TGCGCATGCTTCTTAAACTCTGCCTCTTTGATGACGATCTGGCTGCCGAG
TATTTGCTCTCCCACCTAATATCTACGGTCTACAGTCGTTCTGAGATGCA
GAGCATCGGCAAGTTCGCCCTTAACCTTTGTAATCTCCCTAAGAATTGTG
AGGCGTATGCAACCAAGTTGTATCAAATTCTGGAGCTGCTACTGCCGGCC
AGCCATTACATGCCCATGACTCTCGTCACACTAAACACGGCAGCCTTTGC
CCCAAAGAAGGATTATGAGACAAACAAGCTGGTTTCCGGCGTACTACAGT
TGGCTCCCCATACGCATTTGGTGCTCGACGAGACGTGCATGCAACAGGGC
AAGCTGGAGGCCAATGGTGTTCATGCCGTTCAGCATTTAGCGCACTTGAT
CAATAATCAGGAACTGAAGTGCGACTTTCAGTATTACCAAATAGACTACC
AAGCAAATATTCCAGTTCTCGTGCTCAGTGAAGGGCGAAGTATGTTGCCG
AGCGATTTTGTGCTGCCCATTAATGCCGATTCTAAGGCCGTGGAACTTGT
TGATGAATCTCTAAAGGCAGCCCACCACTATCTGCAGCCATCACGTCTGC
AGCAGTTTCGCAAGTACTTGACCACAGCGCGCACTAGCGGCTTCAACGTG
AGCGAGGAGCACACTGAAATGATCCAGCAGGATTTCGTGGACATGCGTAA
AGCTAATGTCAAAAGTAATGCCGATGATCTGCATGGATTGCTGGTCCTCT
CACGGCTGCTGGGCATCGCCCGGGGGAAGGATACGTTGGACAAAGAAACA
TGGCAGCTGGCTACGGAGTTCGAAGCAAAGCGTCGCCAGCGTATTCAATC
TCTGCCGAAATCATCTGCCCAATTGCGCAATTAAAAGCTTTCTAGACCAT
BS10047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3430-RA | 1818 | CG3430-PA | 1..1818 | 17..1834 | 9090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3430-RA | 1973 | CG3430-RA | 91..1908 | 17..1834 | 9090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6957098..6958288 | 17..1207 | 5955 | 100 | Plus |
2L | 23513712 | 2L | 6958655..6959039 | 1450..1834 | 1925 | 100 | Plus |
2L | 23513712 | 2L | 6958346..6958589 | 1207..1450 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:37:58 has no hits.
BS10047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:52 Download gff for
BS10047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-RA | 1..1818 | 17..1834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:02 Download gff for
BS10047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-RA | 89..1909 | 17..1837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:07 Download gff for
BS10047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-RA | 91..1906 | 17..1832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:07 Download gff for
BS10047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-RA | 89..1904 | 17..1832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:51 Download gff for
BS10047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3430-RA | 91..1906 | 17..1832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:51 Download gff for
BS10047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6957098..6958287 | 17..1206 | 100 | -> | Plus |
2L | 6958346..6958589 | 1207..1450 | 100 | -> | Plus |
2L | 6958656..6959037 | 1451..1832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:07 Download gff for
BS10047.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6957098..6958287 | 17..1206 | 100 | -> | Plus |
arm_2L | 6958346..6958589 | 1207..1450 | 100 | -> | Plus |
arm_2L | 6958656..6959037 | 1451..1832 | 100 | | Plus |
BS10047.pep Sequence
Translation from 16 to 1833
> BS10047.pep
MPCAMELPSTPDELAAQQADSAALKDLLKDPSRWHSIPLLNYTPLHKLKD
QTLVRFRGMIQDMMDPEIYLERYEVKSADGSKRVQEGKYRDCLKIANGEV
IDYNADGNVHGERRTMFVVSVPGLNDWSKEHEKLCCPQIDLASLGQSPSS
AKKRTIVGEEEAMDVDVASETTFKRPCLKEIQKDSEPVGASKSSVLGSDY
LINSPLPDRPSMACMVKVYEEFDTYQLNSLVDFVGFLSVDASLDAATLEI
DDCENLSELQAAHPSPFLIPRLHAFGVQVLPHANPLLDKSLRQPTEICEE
TYPTHLAVHKDLRMLLKLCLFDDDLAAEYLLSHLISTVYSRSEMQSIGKF
ALNLCNLPKNCEAYATKLYQILELLLPASHYMPMTLVTLNTAAFAPKKDY
ETNKLVSGVLQLAPHTHLVLDETCMQQGKLEANGVHAVQHLAHLINNQEL
KCDFQYYQIDYQANIPVLVLSEGRSMLPSDFVLPINADSKAVELVDESLK
AAHHYLQPSRLQQFRKYLTTARTSGFNVSEEHTEMIQQDFVDMRKANVKS
NADDLHGLLVLSRLLGIARGKDTLDKETWQLATEFEAKRRQRIQSLPKSS
AQLRN*
BS10047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3430-PA | 605 | CG3430-PA | 1..605 | 1..605 | 3129 | 100 | Plus |