Clone BS10047 Report

Search the DGRC for BS10047

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG3430-RA
Protein status:BS10047.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10047.3prime Sequence

873 bp (807 high quality bases) assembled on 2006-04-19

> BS10047.3prime
ATGGTCTAGAAAGCTTTTAATTGCGCAATTGGGCAGATGATTTCGGCAGA
GATTGAATACGCTGGCGACGCTTTGCTTCGAACTCCGTAGCCAGCTGCCA
TGTTTCTTTGTCCAACGTATCCTTCCCCCGGGCGATGCCCAGCAGCCGTG
AGAGGACCAGCAATCCATGCAGATCATCGGCATTACTTTTGACATTAGCT
TTACGCATGTCCACGAAATCCTGCTGGATCATTTCAGTGTGCTCCTCGCT
CACGTTGAAGCCGCTAGTGCGCGCTGTGGTCAAGTACTTGCGAAACTGCT
GCAGACGTGATGGCTGCAGATAGTGGTGGGCTGCCTTTAGAGATTCATCA
ACAAGTTCCACGGCCTTAGAATCGGCATTAATGGGCAGCACAAAATCGCT
CGGCAACATACTTCGCCCTTCACTGAGCACGAGAACTGGAATATTTGCTT
GGTAGTCTATTTGGTAATACTGAAAGTCGCACTTCAGTTCCTGATTATTG
ATCAAGTGCGCTAAATGCTGAACGGCATGAACACCATTGGCCTCCAGCTT
GCCCTGTTGCATGCACGTCTCGTCGAGCACCAAATGCGTATGGGGAGCCA
ACTGTAGTACGCCGGAAACCAGCTTGTTTGTCTCATAATCCTTCTTTGGG
GCAAAGGCTGCCGTGTTTAGTGTGACGAGAGTCATGGGCATGTAATGGCT
GGCCGGCAGTAGCAGCTCCAGAATTTGATACAACTTGGTTGCATACGCCT
CACAATTCTTAGGGAGATTACAAAGGTTAAGGGCGAACTTGCCGATGCTC
TGCATCTCAGAACGACTGTAGACCGTAGATATTAGGTGGGAGAGCAAATA
CTCGGCAGCCAGATCGTCATCAA

BS10047.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3430-PA 1818 CG3430-RA 962..1818 873..17 4285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3430-RA 1973 CG3430-RA 1052..1908 873..17 4285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6958655..6959039 401..17 1925 100 Minus
2L 23513712 2L 6958346..6958589 644..401 1220 100 Minus
2L 23513712 2L 6958059..6958288 873..644 1150 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:54:12 has no hits.

BS10047.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:41 Download gff for BS10047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3430-PA 964..1818 17..871 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:19 Download gff for BS10047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3430-PA 964..1818 17..871 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:36:51 Download gff for BS10047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 1054..1911 14..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:56 Download gff for BS10047.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 1054..1911 14..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:56 Download gff for BS10047.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6958061..6958287 645..871 100 -> Minus
2L 6958346..6958589 401..644 100 -> Minus
2L 6958656..6959042 14..400 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:36:51 Download gff for BS10047.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6958061..6958287 645..871 100 -> Minus
arm_2L 6958346..6958589 401..644 100 -> Minus
arm_2L 6958656..6959042 14..400 99   Minus

BS10047.5prime Sequence

970 bp (821 high quality bases) assembled on 2006-04-19

> BS10047.5prime
GAAGTTATCAGTCGACATGCCCTGTGCGATGGAGCTGCCCAGCACGCCCG
ATGAACTGGCCGCCCAGCAAGCGGACAGCGCTGCACTCAAGGACTTGCTC
AAGGATCCCAGTCGTTGGCACTCGATTCCCCTGCTCAACTACACGCCTCT
TCACAAGCTGAAGGATCAGACTCTGGTGCGCTTTCGTGGAATGATCCAGG
ACATGATGGACCCAGAAATCTATCTGGAGCGCTACGAAGTGAAATCCGCC
GACGGCAGCAAACGTGTACAGGAAGGAAAGTACAGGGACTGCTTGAAAAT
AGCCAATGGCGAAGTGATTGACTACAACGCCGATGGAAACGTGCATGGAG
AGAGGCGTACCATGTTCGTGGTCTCTGTGCCTGGTCTGAACGATTGGAGC
AAGGAGCATGAGAAGCTGTGCTGTCCCCAGATCGATTTGGCCAGTCTGGG
TCAATCTCCCAGTTCAGCCAAGAAGCGGACTATTGTAGGCGAAGAAGAAG
CCATGGATGTGGACGTTGCGAGCGAAACAACGTTCAAGCGACCCTGCCTA
AAAGAGATTCAAAAAGATAGCGAGCCAGTCGGCGCCTCCAAATCCTCTGT
TCTTGGGTCTGATTACCTGATTAACTCGCCTCTGCCGGATCGTCCCAGCA
TGGCATGCATGGTAAAGGTTTACGAGGAGTTCGATACCTACCAGCTTAAC
TCGCTGGTCGACTTTGTGGGCTTTCTGTCAGTGGATGCTTCACTAGACGC
CGCTACCCTGGAAATAGACGATTGTGAAAACTTGAGTGAACTGCANGCAG
CTCATCCATCGCCATTTCTTATACCCCGCCTGCATGCCTTCGGAGTCCAG
GTGCTGCCGCATGCCNATCCGCTGCTGGACAAAAGCCTTCGACAGCAACG
GGAATATGTGAGGAGACGTATCCCACCCACCTTGCTGTGCACAAAGATCT
GCGCATGCTTCTTAAACTCT

BS10047.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3430-PA 1818 CG3430-RA 1..880 17..896 4362 99.7 Plus
CG3430-PA 1818 CG3430-RA 881..955 896..970 325 97.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3430-RA 1973 CG3430-RA 91..1045 17..970 4698 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6957098..6958052 17..970 4673 99.5 Plus
Blast to na_te.dros performed on 2015-02-13 00:31:15 has no hits.

BS10047.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:42 Download gff for BS10047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3430-PA 1..955 17..970 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:21 Download gff for BS10047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3430-PA 1..955 17..970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:59:42 Download gff for BS10047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 91..1045 17..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:23 Download gff for BS10047.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 91..1045 17..970 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:23 Download gff for BS10047.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6957098..6958052 17..970 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:59:42 Download gff for BS10047.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6957098..6958052 17..970 99   Plus

BS10047.complete Sequence

1850 bp assembled on 2007-11-30

GenBank Submission: FJ636540

> BS10047.complete
GAAGTTATCAGTCGACATGCCCTGTGCGATGGAGCTGCCCAGCACGCCCG
ATGAACTGGCCGCCCAGCAAGCGGACAGCGCTGCACTCAAGGACTTGCTC
AAGGATCCCAGTCGTTGGCACTCGATTCCCCTGCTCAACTACACGCCTCT
TCACAAGCTGAAGGATCAGACTCTGGTGCGCTTTCGTGGAATGATCCAGG
ACATGATGGACCCAGAAATCTATCTGGAGCGCTACGAAGTGAAATCCGCC
GACGGCAGCAAACGTGTACAGGAAGGAAAGTACAGGGACTGCTTGAAAAT
AGCCAATGGCGAAGTGATTGACTACAACGCCGATGGAAACGTGCATGGAG
AGAGGCGTACCATGTTCGTGGTCTCTGTGCCTGGTCTGAACGATTGGAGC
AAGGAGCATGAGAAGCTGTGCTGTCCCCAGATCGATTTGGCCAGTCTGGG
TCAATCTCCCAGTTCAGCCAAGAAGCGGACTATTGTAGGCGAAGAAGAAG
CCATGGATGTGGACGTTGCGAGCGAAACAACGTTCAAGCGACCCTGCCTA
AAAGAGATTCAAAAAGATAGCGAGCCAGTCGGCGCCTCCAAATCCTCTGT
TCTTGGGTCTGATTACCTGATTAACTCGCCTCTGCCGGATCGTCCCAGCA
TGGCATGCATGGTAAAGGTTTACGAGGAGTTCGATACCTACCAGCTTAAC
TCGCTGGTCGACTTTGTGGGCTTTCTGTCAGTGGATGCTTCACTAGACGC
CGCTACCCTGGAAATAGACGATTGTGAAAACTTGAGTGAACTGCAGGCAG
CTCATCCATCGCCATTTCTTATACCCCGCCTGCATGCCTTCGGAGTCCAG
GTGCTGCCGCATGCCAATCCGCTGCTGGACAAAAGCCTTCGACAGCCAAC
GGAAATATGTGAGGAGACGTATCCAACCCACCTTGCTGTGCACAAAGATC
TGCGCATGCTTCTTAAACTCTGCCTCTTTGATGACGATCTGGCTGCCGAG
TATTTGCTCTCCCACCTAATATCTACGGTCTACAGTCGTTCTGAGATGCA
GAGCATCGGCAAGTTCGCCCTTAACCTTTGTAATCTCCCTAAGAATTGTG
AGGCGTATGCAACCAAGTTGTATCAAATTCTGGAGCTGCTACTGCCGGCC
AGCCATTACATGCCCATGACTCTCGTCACACTAAACACGGCAGCCTTTGC
CCCAAAGAAGGATTATGAGACAAACAAGCTGGTTTCCGGCGTACTACAGT
TGGCTCCCCATACGCATTTGGTGCTCGACGAGACGTGCATGCAACAGGGC
AAGCTGGAGGCCAATGGTGTTCATGCCGTTCAGCATTTAGCGCACTTGAT
CAATAATCAGGAACTGAAGTGCGACTTTCAGTATTACCAAATAGACTACC
AAGCAAATATTCCAGTTCTCGTGCTCAGTGAAGGGCGAAGTATGTTGCCG
AGCGATTTTGTGCTGCCCATTAATGCCGATTCTAAGGCCGTGGAACTTGT
TGATGAATCTCTAAAGGCAGCCCACCACTATCTGCAGCCATCACGTCTGC
AGCAGTTTCGCAAGTACTTGACCACAGCGCGCACTAGCGGCTTCAACGTG
AGCGAGGAGCACACTGAAATGATCCAGCAGGATTTCGTGGACATGCGTAA
AGCTAATGTCAAAAGTAATGCCGATGATCTGCATGGATTGCTGGTCCTCT
CACGGCTGCTGGGCATCGCCCGGGGGAAGGATACGTTGGACAAAGAAACA
TGGCAGCTGGCTACGGAGTTCGAAGCAAAGCGTCGCCAGCGTATTCAATC
TCTGCCGAAATCATCTGCCCAATTGCGCAATTAAAAGCTTTCTAGACCAT

BS10047.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3430-RA 1818 CG3430-PA 1..1818 17..1834 9090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3430-RA 1973 CG3430-RA 91..1908 17..1834 9090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6957098..6958288 17..1207 5955 100 Plus
2L 23513712 2L 6958655..6959039 1450..1834 1925 100 Plus
2L 23513712 2L 6958346..6958589 1207..1450 1220 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:37:58 has no hits.

BS10047.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:52 Download gff for BS10047.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 1..1818 17..1834 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:02 Download gff for BS10047.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 89..1909 17..1837 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:07 Download gff for BS10047.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 91..1906 17..1832 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:07 Download gff for BS10047.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 89..1904 17..1832 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:51 Download gff for BS10047.complete
Subject Subject Range Query Range Percent Splice Strand
CG3430-RA 91..1906 17..1832 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:51 Download gff for BS10047.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6957098..6958287 17..1206 100 -> Plus
2L 6958346..6958589 1207..1450 100 -> Plus
2L 6958656..6959037 1451..1832 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:07 Download gff for BS10047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6957098..6958287 17..1206 100 -> Plus
arm_2L 6958346..6958589 1207..1450 100 -> Plus
arm_2L 6958656..6959037 1451..1832 100   Plus

BS10047.pep Sequence

Translation from 16 to 1833

> BS10047.pep
MPCAMELPSTPDELAAQQADSAALKDLLKDPSRWHSIPLLNYTPLHKLKD
QTLVRFRGMIQDMMDPEIYLERYEVKSADGSKRVQEGKYRDCLKIANGEV
IDYNADGNVHGERRTMFVVSVPGLNDWSKEHEKLCCPQIDLASLGQSPSS
AKKRTIVGEEEAMDVDVASETTFKRPCLKEIQKDSEPVGASKSSVLGSDY
LINSPLPDRPSMACMVKVYEEFDTYQLNSLVDFVGFLSVDASLDAATLEI
DDCENLSELQAAHPSPFLIPRLHAFGVQVLPHANPLLDKSLRQPTEICEE
TYPTHLAVHKDLRMLLKLCLFDDDLAAEYLLSHLISTVYSRSEMQSIGKF
ALNLCNLPKNCEAYATKLYQILELLLPASHYMPMTLVTLNTAAFAPKKDY
ETNKLVSGVLQLAPHTHLVLDETCMQQGKLEANGVHAVQHLAHLINNQEL
KCDFQYYQIDYQANIPVLVLSEGRSMLPSDFVLPINADSKAVELVDESLK
AAHHYLQPSRLQQFRKYLTTARTSGFNVSEEHTEMIQQDFVDMRKANVKS
NADDLHGLLVLSRLLGIARGKDTLDKETWQLATEFEAKRRQRIQSLPKSS
AQLRN*

BS10047.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3430-PA 605 CG3430-PA 1..605 1..605 3129 100 Plus