Clone Sequence Records
BS10048.3prime Sequence
931 bp (742 high quality bases) assembled on 2006-04-19
> BS10048.3prime
ATGGTCTAGAAAGCTTTTAACTACGTACGGATTCCTCCTTAACATTGGGC
GTAATACTGGCCCCCGTCGTAACTGTGTCTTTGTCCTTGGTACCAAAATC
CGGATACAGCTTGGCCACTTGACCCAACGGAGTGCAAAGGCGTCCCGAGA
AATCCAATCGTTTGTTGGACTGGCTTCGCTCTGCTGAGGATATAATATCT
AGCAGGGATCTTTGCCCACAACTAGACATGCGACGCTTGCTCGCCTTGAG
AAGGCTATTGGAGCTGCTGCTGCCACTAGCACCGACGCTACTGATGGGCT
CCAGCCGTTCGGGAGAGAGTGGGGATTCCGTGTAGGTGCGCAGGAGACTT
GCTCCAGGTTCCGACTTCAGCGGGGCATCGCCGTATGCGGCTCGCAAACT
CTGTAGGCTTTCCAGCAGATTTTTATGGTGCATTGTGGTGGCATTTAGTT
GAATTAATTGCTCCAGTTCCCTGTACAGCAAGCGGTACTGGTCTTTGGCC
TTGGAAAGCTTTAGTCTTGCTCCATTGGTGTGGGTAAATGGTAGGACATC
GCCACGCGAGGCGCTTTTGTACAGCTCGTGAATGTGCTGCTGGCACCGCA
CCTCGTCCTGCTTATCCATGTCTTCCTTCACTAAAAGATGGAGAAAATGC
GGAAGCCAACTGATGTGTCGCTGTAGATGGAACAGAATCGAAGAGCTGGT
GGTCAGGGGGAAGTAGCGAGGCAACCGGCGCGTCAAGGGCGGAGCAGATG
GATCCTTAACCTTGAGCGGAACCACGCGCGACATCTTGATCAGTTGACCA
AGTTCGGCGGTGCGATAGTCCGAGACACGTCCTCCGGGGCCATCAGTAAT
TGATGGAGCCTCATCCATGCAGGAGCGCGTGATGCACAGGGAGTGCACAA
AGATCTCGCCCACGCGTGCAGAAAGCATATG
BS10048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6814-PA | 2070 | Mat89Bb-RA | 1156..2070 | 931..17 | 4525 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asun-RA | 2497 | CG6814-RA | 1238..2154 | 931..15 | 4555 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16265508..16265923 | 931..516 | 2050 | 99.5 | Minus |
| 3R | 32079331 | 3R | 16265986..16266293 | 517..210 | 1540 | 100 | Minus |
| 3R | 32079331 | 3R | 16266352..16266548 | 211..15 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:07:02 has no hits.
BS10048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:44 Download gff for
BS10048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6814-PA | 1156..2070 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:22 Download gff for
BS10048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6814-PA | 1156..2070 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:57:02 Download gff for
BS10048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 1238..2154 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:16 Download gff for
BS10048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 1238..2154 | 15..931 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:16 Download gff for
BS10048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16265508..16265923 | 516..931 | 99 | -> | Minus |
| 3R | 16265988..16266293 | 210..515 | 100 | -> | Minus |
| 3R | 16266354..16266548 | 15..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:57:02 Download gff for
BS10048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12091230..12091645 | 516..931 | 99 | -> | Minus |
| arm_3R | 12091710..12092015 | 210..515 | 100 | -> | Minus |
| arm_3R | 12092076..12092270 | 15..209 | 100 | | Minus |
BS10048.5prime Sequence
909 bp (851 high quality bases) assembled on 2006-04-19
> BS10048.5prime
GAAGTTATCAGTCGACATGTTCGAACGCAACCAGAAGACCATCTTTGTGC
TGGACCACACCCGATACTTTAGCATCGCCAGCGAGGAGTACATCTCGATG
GACTTCCTAAAGGGAAAACCATCTGCAGACGGCGGCGCAACAGGAGCGGC
GGGAAATGCAACCGGCAGCGGTGGATCCCAATTCAGCAAGAGCCTGTGGA
CATGCGCCTGCGAATCCTCCATCGAGTACTGCCGCGTGGTCTGGGATCTC
TTTCCCGGCAAAAAGCATGTGCGGTTTATTGTCTCGGACACGGCGGCGCA
TATCGTGAACACCTGGAGGCCCAGCACGCAAAATATGGCGCACGTGATGA
ACGCAATGCTAATTGTGGGCGTGCCGTCGCGCAACGTACCCACATCTTCT
GACTACTCGGTAATCCATGGCCTGCGGGCCGCCATCGAAGCGCTGGCGGA
GCCCACCGATGAGCAGTTGGCGGCAATGGCCGACTTTGGGACCGACGAAC
TGCCGCGCATTCCCAACAAGGGTCGCGTCATCTGCATAACTTCAGCGCGT
GACAATACCAGCATGAAAAGCCTGGAGGACATCTTTAACACCGTGCTGGT
GCAGCAGAACACCCTAGCAGCTCCGCCCTCCAAGAAGGGACTGGTCATCG
ACCATTGCCACCTAGTTATCCTCAACATTGTGCCGCTGGGCGTTGAATCG
TTGGTTACCAATCGCAGCCTGCTCAAGATATCGCCGCTGCTTGATGTCGA
GATCCACACAGTCAGTGCCCCGGATATTTCCTATAAGCTGACGCACCTCA
TACTGAACCATTACGACCTAGCTAGTACCACGGTGACTAACATACCCATG
AAAGAGGAGCAGAACGCCAACTCCAGCGCCAACTACGATGTGGAAATCCT
GCACAGCCG
BS10048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6814-PA | 2070 | Mat89Bb-RA | 1..893 | 17..909 | 4465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asun-RA | 2497 | CG6814-RA | 82..975 | 16..909 | 4470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16264352..16265245 | 16..909 | 4470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:34:58 has no hits.
BS10048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:45 Download gff for
BS10048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6814-PA | 1..893 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:23 Download gff for
BS10048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6814-PA | 1..893 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:42:52 Download gff for
BS10048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 75..975 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:54 Download gff for
BS10048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 75..975 | 10..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:54 Download gff for
BS10048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16264345..16265245 | 10..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:42:52 Download gff for
BS10048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12090067..12090967 | 10..909 | 99 | | Plus |
BS10048.complete Sequence
2102 bp assembled on 2007-11-30
GenBank Submission: FJ636541
> BS10048.complete
GAAGTTATCAGTCGACATGTTCGAACGCAACCAGAAGACCATCTTTGTGC
TGGACCACACCCGATACTTTAGCATCGCCAGCGAGGAGTACATCTCGATG
GACTTCCTAAAGGGAAAACCATCTGCAGACGGCGGCGCAACAGGAGCGGC
GGGAAATGCAACCGGCAGCGGTGGATCCCAATTCAGCAAGAGCCTGTGGA
CATGCGCCTGCGAATCCTCCATCGAGTACTGCCGCGTGGTCTGGGATCTC
TTTCCCGGCAAAAAGCATGTGCGGTTTATTGTCTCGGACACGGCGGCGCA
TATCGTGAACACCTGGAGGCCCAGCACGCAAAATATGGCGCACGTGATGA
ACGCAATGCTAATTGTGGGCGTGCCGTCGCGCAACGTACCCACATCTTCT
GACTACTCGGTAATCCATGGCCTGCGGGCCGCCATCGAAGCGCTGGCGGA
GCCCACCGATGAGCAGTTGGCGGCAATGGCCGACTTTGGGACCGACGAAC
TGCCGCGCATTCCCAACAAGGGTCGCGTCATCTGCATAACTTCAGCGCGT
GACAATACCAGCATGAAAAGCCTGGAGGACATCTTTAACACCGTGCTGGT
GCAGCAGAACACCCTAGCAGCTCCGCCCTCCAAGAAGGGACTGGTCATCG
ACCATTGCCACCTAGTTATCCTCAACATTGTGCCGCTGGGCGTTGAATCG
TTGGTTACCAATCGCAGCCTGCTCAAGATATCGCCGCTGCTTGATGTCGA
GATCCACACAGTCAGTGCCCCGGATATTTCCTATAAGCTGACGCACCTCA
TACTGAACCATTACGACCTAGCTAGTACCACGGTGACTAACATACCCATG
AAAGAGGAGCAGAACGCCAACTCCAGCGCCAACTACGATGTGGAAATCCT
GCACAGCCGAAGGGCCCACTCCATCACCTGTGGCCCAGATTTCAGTCTAC
CCACGAGCATCAAGCAAGGTGCCACATACGAAACAGTGACTCTTAAGTGG
TGCACACCGCGCGGTTGCGGCTCTGCAGATCTACAGCCCTGTCTGGGTCA
GTTCCTCGTGACACCGGTGGACGTCACCTCGCGGCCCAGTTCTTGCTTGA
TTAACTTTCTGCTTAACGGACGTTCAGTCTTGCTGGAAATGCCGCGCAAG
ACCGGCTCAAAGGCCACCAGCCATATGCTTTCTGCACGCGGTGGCGAGAT
CTTTGTGCACTCCCTGTGCATCACGCGCTCCTGCATGGATGAGGCTCCAT
CAATTACTGATGGCCCCGGAGGACGTGTCTCGGACTATCGCACCGCCGAA
CTTGGTCAACTGATCAAGATGTCGCGCGTGGTTCCGCTCAAGGTTAAGGA
TCCATCTGCTCCGCCCTTGACGCGCCGGTTGCCTCGCTACTTCCCCCTGA
CCACCAGCTCTTCGATTCTGTTCCATCTACAGCGACACATCAGTTGGCTT
CCGCATTTTCTCCATCTTTTAGTGAAGGAAGACATGGATAAGCAGGACGA
GGTGCGGTGCCAGCAGCACATTCACGAGCTGTACAAAAGCGCCTCGCGTG
GCGATGTCCTACCATTTACCCACACCAATGGAGCAAGACTAAAGCTTTCC
AAGGCCAAAGACCAGTACCGCTTGCTGTACAGGGAACTGGAGCAATTAAT
TCAACTAAATGCCACCACAATGCACCATAAAAATCTGCTGGAAAGCCTAC
AGAGTTTGCGAGCCGCATACGGCGATGCCCCGCTGAAGTCGGAACCTGGA
GCAAGTCTCCTGCGCACCTACACGGAATCCCCACTCTCTCCCGAACGGCT
GGAGCCCATCAGTAGCGTCGGTGCTAGTGGCAGCAGCAGCTCCAATAGCC
TTCTCAAGGCGAGCAAGCGTCGCATGTCTAGTTGTGGGCAAAGATCCCTG
CTAGATATTATATCCTCAGCAGAGCGAAGCCAGTCCAACAAACGATTGGA
TTTCTCGGGACGCCTTTGCACTCCGTTGGGTCAAGTGGCCAAGCTGTATC
CGGATTTTGGTACCAAGGACAAAGACACAGTTACGACGGGGGCCAGTATT
ACGCCCAATGTTAAGGAGGAATCCGTACGTAGTTAAAAGCTTTCTAGACC
AT
BS10048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asun-RA | 2070 | CG6814-PA | 1..2070 | 17..2086 | 10350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asun-RA | 2497 | CG6814-RA | 82..2154 | 16..2088 | 10365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16264352..16265923 | 16..1587 | 7860 | 100 | Plus |
| 3R | 32079331 | 3R | 16265986..16266293 | 1586..1893 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 16266352..16266548 | 1892..2088 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:08:18 has no hits.
BS10048.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:53 Download gff for
BS10048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mat89Bb-RA | 1..2070 | 17..2086 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:04 Download gff for
BS10048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mat89Bb-RA | 178..2257 | 10..2088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:05 Download gff for
BS10048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 88..2150 | 22..2084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:11 Download gff for
BS10048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mat89Bb-RA | 191..2253 | 22..2084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:32 Download gff for
BS10048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asun-RA | 88..2150 | 22..2084 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:32 Download gff for
BS10048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16264358..16265923 | 22..1587 | 100 | -> | Plus |
| 3R | 16265988..16266293 | 1588..1893 | 100 | -> | Plus |
| 3R | 16266354..16266544 | 1894..2084 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:05 Download gff for
BS10048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12090080..12091645 | 22..1587 | 100 | -> | Plus |
| arm_3R | 12091710..12092015 | 1588..1893 | 100 | -> | Plus |
| arm_3R | 12092076..12092266 | 1894..2084 | 100 | | Plus |
BS10048.pep Sequence
Translation from 16 to 2085
> BS10048.pep
MFERNQKTIFVLDHTRYFSIASEEYISMDFLKGKPSADGGATGAAGNATG
SGGSQFSKSLWTCACESSIEYCRVVWDLFPGKKHVRFIVSDTAAHIVNTW
RPSTQNMAHVMNAMLIVGVPSRNVPTSSDYSVIHGLRAAIEALAEPTDEQ
LAAMADFGTDELPRIPNKGRVICITSARDNTSMKSLEDIFNTVLVQQNTL
AAPPSKKGLVIDHCHLVILNIVPLGVESLVTNRSLLKISPLLDVEIHTVS
APDISYKLTHLILNHYDLASTTVTNIPMKEEQNANSSANYDVEILHSRRA
HSITCGPDFSLPTSIKQGATYETVTLKWCTPRGCGSADLQPCLGQFLVTP
VDVTSRPSSCLINFLLNGRSVLLEMPRKTGSKATSHMLSARGGEIFVHSL
CITRSCMDEAPSITDGPGGRVSDYRTAELGQLIKMSRVVPLKVKDPSAPP
LTRRLPRYFPLTTSSSILFHLQRHISWLPHFLHLLVKEDMDKQDEVRCQQ
HIHELYKSASRGDVLPFTHTNGARLKLSKAKDQYRLLYRELEQLIQLNAT
TMHHKNLLESLQSLRAAYGDAPLKSEPGASLLRTYTESPLSPERLEPISS
VGASGSSSSNSLLKASKRRMSSCGQRSLLDIISSAERSQSNKRLDFSGRL
CTPLGQVAKLYPDFGTKDKDTVTTGASITPNVKEESVRS*
BS10048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asun-PA | 689 | CG6814-PA | 1..689 | 1..689 | 3552 | 100 | Plus |
