Clone Sequence Records
BS10050.3prime Sequence
840 bp (839 high quality bases) assembled on 2006-04-19
> BS10050.3prime
ATGGTCTAGAAAGCTTCTAAACATCCTTGTAGTCCACCGATAAATGCAAA
AAGTTGTCGGGATAGCTCAGATGCTCGGACATCCATTGCAGTTGGGTCTC
CTCGTGTAGATCAATGCCGTGCGTGCGACATCCAACCGCTCTGCGCACAG
GTGTCGATAATTCGGCCATTAAATCGGCCAAACTCTTCTTTTGTCCGCCC
ACGCTGATCGGTGAAATCAGTTTCTGGGTGTACGTGAAGTCATCGTCTGT
ATAGATTCGCAGGGGAATGTTTTTGAAGGACTCCAAATCGCCATACGGTT
CCATTAGCCTCCGATTGACGGCCCAGAACTGATCGAACTTTTCGTTGACC
AATCCCAGCCAAAGCTGATTGTGGTCCTTCTTTTGCATAGCGGATATGAC
CAGGCCGCGGTGCTTAAGCACATCTGCCTCCTTCAGGCAGGACATGTAGT
GCGATTCAAGTAGCTCCTTGGAGTTGAGCTTGACGAGCATGTCCTCGGGG
AACTTGGAGAAGTGAATGGTGAGGCACCAGGGCGTGCTGTCCTCCTCCGG
ATGCAGCAGATCGTATAGGACACCAATTGGATAGTGAAGTCGCAGGGGCG
TTCCATTGAAGTCGAACCACACAGCTCCATCCTGGTGTTCGGCGCTTATA
TAGCGTGAGAAGTACTTGCGAACCTTGTCAGTCACCAAAGGCAAGTAGCT
GAGTCGCGATATCATCAGATAGAAAGGCTCCGGCTTAATGCCCACGATCT
CGTCCCGATCCGCCTGGAAGCATATGCCTATCTGGCCCTCCCAGATCATT
CGCAGCACCTCGCGGTCGTGGGCCATGTCGACTGATAACT
BS10050.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1643-PA | 810 | Atg5-RA | 1..810 | 826..17 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg5-RA | 1418 | CG1643-RA | 97..908 | 828..17 | 4060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7322556..7322782 | 241..467 | 1135 | 100 | Plus |
X | 23542271 | X | 7323518..7323674 | 672..828 | 785 | 100 | Plus |
X | 23542271 | X | 7315132..7315251 | 17..136 | 600 | 100 | Plus |
X | 23542271 | X | 7323157..7323264 | 467..574 | 540 | 100 | Plus |
X | 23542271 | X | 7322367..7322472 | 136..241 | 530 | 100 | Plus |
X | 23542271 | X | 7323343..7323447 | 571..675 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:51:18 has no hits.
BS10050.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:48 Download gff for
BS10050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-PA | 1..810 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:28 Download gff for
BS10050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1643-PA | 1..810 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:19:14 Download gff for
BS10050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 90..912 | 11..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:24 Download gff for
BS10050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 90..912 | 11..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:24 Download gff for
BS10050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7315128..7315250 | 11..135 | 97 | <- | Plus |
X | 7322367..7322472 | 136..241 | 100 | <- | Plus |
X | 7322557..7322782 | 242..467 | 100 | <- | Plus |
X | 7323158..7323263 | 468..573 | 100 | <- | Plus |
X | 7323346..7323445 | 574..673 | 100 | <- | Plus |
X | 7323520..7323681 | 674..836 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:19:14 Download gff for
BS10050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7217191..7217296 | 468..573 | 100 | <- | Plus |
arm_X | 7217379..7217478 | 574..673 | 100 | <- | Plus |
arm_X | 7217553..7217714 | 674..836 | 97 | | Plus |
arm_X | 7209161..7209283 | 11..135 | 97 | <- | Plus |
arm_X | 7216400..7216505 | 136..241 | 100 | <- | Plus |
arm_X | 7216590..7216815 | 242..467 | 100 | <- | Plus |
BS10050.5prime Sequence
840 bp (839 high quality bases) assembled on 2006-04-19
> BS10050.5prime
GAAGTTATCAGTCGACATGGCCCACGACCGCGAGGTGCTGCGAATGATCT
GGGAGGGCCAGATAGGCATATGCTTCCAGGCGGATCGGGACGAGATCGTG
GGCATTAAGCCGGAGCCTTTCTATCTGATGATATCGCGACTCAGCTACTT
GCCTTTGGTGACTGACAAGGTTCGCAAGTACTTCTCACGCTATATAAGCG
CCGAACACCAGGATGGAGCTGTGTGGTTCGACTTCAATGGAACGCCCCTG
CGACTTCACTATCCAATTGGTGTCCTATACGATCTGCTGCATCCGGAGGA
GGACAGCACGCCCTGGTGCCTCACCATTCACTTCTCCAAGTTCCCCGAGG
ACATGCTCGTCAAGCTCAACTCCAAGGAGCTACTTGAATCGCACTACATG
TCCTGCCTGAAGGAGGCAGATGTGCTTAAGCACCGCGGCCTGGTCATATC
CGCTATGCAAAAGAAGGACCACAATCAGCTTTGGCTGGGATTGGTCAACG
AAAAGTTCGATCAGTTCTGGGCCGTCAATCGGAGGCTAATGGAACCGTAT
GGCGATTTGGAGTCCTTCAAAAACATTCCCCTGCGAATCTATACAGACGA
TGACTTCACGTACACCCAGAAACTGATTTCACCGATCAGCGTGGGCGGAC
AAAAGAAGAGTTTGGCCGATTTAATGGCCGAATTATCGACACCTGTGCGC
AGAGCGGTTGGATGTCGCACGCACGGCATTGATCTACACGAGGAGACCCA
ACTGCAATGGATGTCCGAGCATCTGAGCTATCCCGACAACTTTTTGCATT
TATCGGTGGACTACAAGGATGTTTAGAAGCTTTCTAGACC
BS10050.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1643-PA | 810 | Atg5-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg5-RA | 1418 | CG1643-RA | 97..908 | 15..826 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7322556..7322782 | 602..376 | 1135 | 100 | Minus |
X | 23542271 | X | 7323518..7323674 | 171..15 | 785 | 100 | Minus |
X | 23542271 | X | 7315132..7315251 | 826..707 | 600 | 100 | Minus |
X | 23542271 | X | 7323157..7323264 | 376..269 | 540 | 100 | Minus |
X | 23542271 | X | 7322367..7322472 | 707..602 | 530 | 100 | Minus |
X | 23542271 | X | 7323343..7323447 | 272..168 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:24:04 has no hits.
BS10050.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:49 Download gff for
BS10050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:29 Download gff for
BS10050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1643-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:33:44 Download gff for
BS10050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 90..912 | 7..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:05:41 Download gff for
BS10050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 90..912 | 7..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:05:41 Download gff for
BS10050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7315128..7315250 | 708..832 | 97 | <- | Minus |
X | 7322367..7322472 | 602..707 | 100 | <- | Minus |
X | 7322557..7322782 | 376..601 | 100 | <- | Minus |
X | 7323158..7323263 | 270..375 | 100 | <- | Minus |
X | 7323346..7323445 | 170..269 | 100 | <- | Minus |
X | 7323520..7323681 | 7..169 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:33:44 Download gff for
BS10050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7209161..7209283 | 708..832 | 97 | <- | Minus |
arm_X | 7216400..7216505 | 602..707 | 100 | <- | Minus |
arm_X | 7216590..7216815 | 376..601 | 100 | <- | Minus |
arm_X | 7217191..7217296 | 270..375 | 100 | <- | Minus |
arm_X | 7217379..7217478 | 170..269 | 100 | <- | Minus |
arm_X | 7217553..7217714 | 7..169 | 97 | | Minus |
BS10050.complete Sequence
842 bp (842 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636542
> BS10050.complete
GAAGTTATCAGTCGACATGGCCCACGACCGCGAGGTGCTGCGAATGATCT
GGGAGGGCCAGATAGGCATATGCTTCCAGGCGGATCGGGACGAGATCGTG
GGCATTAAGCCGGAGCCTTTCTATCTGATGATATCGCGACTCAGCTACTT
GCCTTTGGTGACTGACAAGGTTCGCAAGTACTTCTCACGCTATATAAGCG
CCGAACACCAGGATGGAGCTGTGTGGTTCGACTTCAATGGAACGCCCCTG
CGACTTCACTATCCAATTGGTGTCCTATACGATCTGCTGCATCCGGAGGA
GGACAGCACGCCCTGGTGCCTCACCATTCACTTCTCCAAGTTCCCCGAGG
ACATGCTCGTCAAGCTCAACTCCAAGGAGCTACTTGAATCGCACTACATG
TCCTGCCTGAAGGAGGCAGATGTGCTTAAGCACCGCGGCCTGGTCATATC
CGCTATGCAAAAGAAGGACCACAATCAGCTTTGGCTGGGATTGGTCAACG
AAAAGTTCGATCAGTTCTGGGCCGTCAATCGGAGGCTAATGGAACCGTAT
GGCGATTTGGAGTCCTTCAAAAACATTCCCCTGCGAATCTATACAGACGA
TGACTTCACGTACACCCAGAAACTGATTTCACCGATCAGCGTGGGCGGAC
AAAAGAAGAGTTTGGCCGATTTAATGGCCGAATTATCGACACCTGTGCGC
AGAGCGGTTGGATGTCGCACGCACGGCATTGATCTACACGAGGAGACCCA
ACTGCAATGGATGTCCGAGCATCTGAGCTATCCCGACAACTTTTTGCATT
TATCGGTGGACTACAAGGATGTTTAGAAGCTTTCTAGACCAT
BS10050.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg5-RA | 810 | CG1643-PA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg5-RA | 1418 | CG1643-RA | 97..908 | 15..826 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7322556..7322782 | 602..376 | 1135 | 100 | Minus |
X | 23542271 | X | 7323518..7323674 | 171..15 | 785 | 100 | Minus |
X | 23542271 | X | 7315132..7315251 | 826..707 | 600 | 100 | Minus |
X | 23542271 | X | 7323157..7323264 | 376..269 | 540 | 100 | Minus |
X | 23542271 | X | 7322367..7322472 | 707..602 | 530 | 100 | Minus |
X | 23542271 | X | 7323343..7323447 | 272..168 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:55:07 has no hits.
BS10050.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:43 Download gff for
BS10050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:21 Download gff for
BS10050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 60..882 | 7..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:31 Download gff for
BS10050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 99..908 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:43 Download gff for
BS10050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 60..882 | 7..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:46 Download gff for
BS10050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg5-RA | 99..908 | 17..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:46 Download gff for
BS10050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7315132..7315250 | 708..826 | 100 | <- | Minus |
X | 7322367..7322472 | 602..707 | 100 | <- | Minus |
X | 7322557..7322782 | 376..601 | 100 | <- | Minus |
X | 7323158..7323263 | 270..375 | 100 | <- | Minus |
X | 7323346..7323445 | 170..269 | 100 | <- | Minus |
X | 7323520..7323672 | 17..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:31 Download gff for
BS10050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7217553..7217705 | 17..169 | 100 | | Minus |
arm_X | 7217191..7217296 | 270..375 | 100 | <- | Minus |
arm_X | 7217379..7217478 | 170..269 | 100 | <- | Minus |
arm_X | 7209165..7209283 | 708..826 | 100 | <- | Minus |
arm_X | 7216400..7216505 | 602..707 | 100 | <- | Minus |
arm_X | 7216590..7216815 | 376..601 | 100 | <- | Minus |
BS10050.pep Sequence
Translation from 16 to 825
> BS10050.pep
MAHDREVLRMIWEGQIGICFQADRDEIVGIKPEPFYLMISRLSYLPLVTD
KVRKYFSRYISAEHQDGAVWFDFNGTPLRLHYPIGVLYDLLHPEEDSTPW
CLTIHFSKFPEDMLVKLNSKELLESHYMSCLKEADVLKHRGLVISAMQKK
DHNQLWLGLVNEKFDQFWAVNRRLMEPYGDLESFKNIPLRIYTDDDFTYT
QKLISPISVGGQKKSLADLMAELSTPVRRAVGCRTHGIDLHEETQLQWMS
EHLSYPDNFLHLSVDYKDV*
BS10050.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg5-PA | 269 | CG1643-PA | 1..269 | 1..269 | 1444 | 100 | Plus |