Clone BS10050 Report

Search the DGRC for BS10050

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptAtg5-RA
Protein status:BS10050.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10050.3prime Sequence

840 bp (839 high quality bases) assembled on 2006-04-19

> BS10050.3prime
ATGGTCTAGAAAGCTTCTAAACATCCTTGTAGTCCACCGATAAATGCAAA
AAGTTGTCGGGATAGCTCAGATGCTCGGACATCCATTGCAGTTGGGTCTC
CTCGTGTAGATCAATGCCGTGCGTGCGACATCCAACCGCTCTGCGCACAG
GTGTCGATAATTCGGCCATTAAATCGGCCAAACTCTTCTTTTGTCCGCCC
ACGCTGATCGGTGAAATCAGTTTCTGGGTGTACGTGAAGTCATCGTCTGT
ATAGATTCGCAGGGGAATGTTTTTGAAGGACTCCAAATCGCCATACGGTT
CCATTAGCCTCCGATTGACGGCCCAGAACTGATCGAACTTTTCGTTGACC
AATCCCAGCCAAAGCTGATTGTGGTCCTTCTTTTGCATAGCGGATATGAC
CAGGCCGCGGTGCTTAAGCACATCTGCCTCCTTCAGGCAGGACATGTAGT
GCGATTCAAGTAGCTCCTTGGAGTTGAGCTTGACGAGCATGTCCTCGGGG
AACTTGGAGAAGTGAATGGTGAGGCACCAGGGCGTGCTGTCCTCCTCCGG
ATGCAGCAGATCGTATAGGACACCAATTGGATAGTGAAGTCGCAGGGGCG
TTCCATTGAAGTCGAACCACACAGCTCCATCCTGGTGTTCGGCGCTTATA
TAGCGTGAGAAGTACTTGCGAACCTTGTCAGTCACCAAAGGCAAGTAGCT
GAGTCGCGATATCATCAGATAGAAAGGCTCCGGCTTAATGCCCACGATCT
CGTCCCGATCCGCCTGGAAGCATATGCCTATCTGGCCCTCCCAGATCATT
CGCAGCACCTCGCGGTCGTGGGCCATGTCGACTGATAACT

BS10050.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1643-PA 810 Atg5-RA 1..810 826..17 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-RA 1418 CG1643-RA 97..908 828..17 4060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7322556..7322782 241..467 1135 100 Plus
X 23542271 X 7323518..7323674 672..828 785 100 Plus
X 23542271 X 7315132..7315251 17..136 600 100 Plus
X 23542271 X 7323157..7323264 467..574 540 100 Plus
X 23542271 X 7322367..7322472 136..241 530 100 Plus
X 23542271 X 7323343..7323447 571..675 525 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:51:18 has no hits.

BS10050.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:48 Download gff for BS10050.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-PA 1..810 17..826 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:28 Download gff for BS10050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1643-PA 1..810 17..826 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:19:14 Download gff for BS10050.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 90..912 11..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:24 Download gff for BS10050.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 90..912 11..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:24 Download gff for BS10050.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7315128..7315250 11..135 97 <- Plus
X 7322367..7322472 136..241 100 <- Plus
X 7322557..7322782 242..467 100 <- Plus
X 7323158..7323263 468..573 100 <- Plus
X 7323346..7323445 574..673 100 <- Plus
X 7323520..7323681 674..836 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:19:14 Download gff for BS10050.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7217191..7217296 468..573 100 <- Plus
arm_X 7217379..7217478 574..673 100 <- Plus
arm_X 7217553..7217714 674..836 97   Plus
arm_X 7209161..7209283 11..135 97 <- Plus
arm_X 7216400..7216505 136..241 100 <- Plus
arm_X 7216590..7216815 242..467 100 <- Plus

BS10050.5prime Sequence

840 bp (839 high quality bases) assembled on 2006-04-19

> BS10050.5prime
GAAGTTATCAGTCGACATGGCCCACGACCGCGAGGTGCTGCGAATGATCT
GGGAGGGCCAGATAGGCATATGCTTCCAGGCGGATCGGGACGAGATCGTG
GGCATTAAGCCGGAGCCTTTCTATCTGATGATATCGCGACTCAGCTACTT
GCCTTTGGTGACTGACAAGGTTCGCAAGTACTTCTCACGCTATATAAGCG
CCGAACACCAGGATGGAGCTGTGTGGTTCGACTTCAATGGAACGCCCCTG
CGACTTCACTATCCAATTGGTGTCCTATACGATCTGCTGCATCCGGAGGA
GGACAGCACGCCCTGGTGCCTCACCATTCACTTCTCCAAGTTCCCCGAGG
ACATGCTCGTCAAGCTCAACTCCAAGGAGCTACTTGAATCGCACTACATG
TCCTGCCTGAAGGAGGCAGATGTGCTTAAGCACCGCGGCCTGGTCATATC
CGCTATGCAAAAGAAGGACCACAATCAGCTTTGGCTGGGATTGGTCAACG
AAAAGTTCGATCAGTTCTGGGCCGTCAATCGGAGGCTAATGGAACCGTAT
GGCGATTTGGAGTCCTTCAAAAACATTCCCCTGCGAATCTATACAGACGA
TGACTTCACGTACACCCAGAAACTGATTTCACCGATCAGCGTGGGCGGAC
AAAAGAAGAGTTTGGCCGATTTAATGGCCGAATTATCGACACCTGTGCGC
AGAGCGGTTGGATGTCGCACGCACGGCATTGATCTACACGAGGAGACCCA
ACTGCAATGGATGTCCGAGCATCTGAGCTATCCCGACAACTTTTTGCATT
TATCGGTGGACTACAAGGATGTTTAGAAGCTTTCTAGACC

BS10050.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1643-PA 810 Atg5-RA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-RA 1418 CG1643-RA 97..908 15..826 4060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7322556..7322782 602..376 1135 100 Minus
X 23542271 X 7323518..7323674 171..15 785 100 Minus
X 23542271 X 7315132..7315251 826..707 600 100 Minus
X 23542271 X 7323157..7323264 376..269 540 100 Minus
X 23542271 X 7322367..7322472 707..602 530 100 Minus
X 23542271 X 7323343..7323447 272..168 525 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:24:04 has no hits.

BS10050.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:49 Download gff for BS10050.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:29 Download gff for BS10050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1643-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:33:44 Download gff for BS10050.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 90..912 7..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:05:41 Download gff for BS10050.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 90..912 7..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:05:41 Download gff for BS10050.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7315128..7315250 708..832 97 <- Minus
X 7322367..7322472 602..707 100 <- Minus
X 7322557..7322782 376..601 100 <- Minus
X 7323158..7323263 270..375 100 <- Minus
X 7323346..7323445 170..269 100 <- Minus
X 7323520..7323681 7..169 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:33:44 Download gff for BS10050.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7209161..7209283 708..832 97 <- Minus
arm_X 7216400..7216505 602..707 100 <- Minus
arm_X 7216590..7216815 376..601 100 <- Minus
arm_X 7217191..7217296 270..375 100 <- Minus
arm_X 7217379..7217478 170..269 100 <- Minus
arm_X 7217553..7217714 7..169 97   Minus

BS10050.complete Sequence

842 bp (842 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636542

> BS10050.complete
GAAGTTATCAGTCGACATGGCCCACGACCGCGAGGTGCTGCGAATGATCT
GGGAGGGCCAGATAGGCATATGCTTCCAGGCGGATCGGGACGAGATCGTG
GGCATTAAGCCGGAGCCTTTCTATCTGATGATATCGCGACTCAGCTACTT
GCCTTTGGTGACTGACAAGGTTCGCAAGTACTTCTCACGCTATATAAGCG
CCGAACACCAGGATGGAGCTGTGTGGTTCGACTTCAATGGAACGCCCCTG
CGACTTCACTATCCAATTGGTGTCCTATACGATCTGCTGCATCCGGAGGA
GGACAGCACGCCCTGGTGCCTCACCATTCACTTCTCCAAGTTCCCCGAGG
ACATGCTCGTCAAGCTCAACTCCAAGGAGCTACTTGAATCGCACTACATG
TCCTGCCTGAAGGAGGCAGATGTGCTTAAGCACCGCGGCCTGGTCATATC
CGCTATGCAAAAGAAGGACCACAATCAGCTTTGGCTGGGATTGGTCAACG
AAAAGTTCGATCAGTTCTGGGCCGTCAATCGGAGGCTAATGGAACCGTAT
GGCGATTTGGAGTCCTTCAAAAACATTCCCCTGCGAATCTATACAGACGA
TGACTTCACGTACACCCAGAAACTGATTTCACCGATCAGCGTGGGCGGAC
AAAAGAAGAGTTTGGCCGATTTAATGGCCGAATTATCGACACCTGTGCGC
AGAGCGGTTGGATGTCGCACGCACGGCATTGATCTACACGAGGAGACCCA
ACTGCAATGGATGTCCGAGCATCTGAGCTATCCCGACAACTTTTTGCATT
TATCGGTGGACTACAAGGATGTTTAGAAGCTTTCTAGACCAT

BS10050.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-RA 810 CG1643-PA 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-RA 1418 CG1643-RA 97..908 15..826 4060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7322556..7322782 602..376 1135 100 Minus
X 23542271 X 7323518..7323674 171..15 785 100 Minus
X 23542271 X 7315132..7315251 826..707 600 100 Minus
X 23542271 X 7323157..7323264 376..269 540 100 Minus
X 23542271 X 7322367..7322472 707..602 530 100 Minus
X 23542271 X 7323343..7323447 272..168 525 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:55:07 has no hits.

BS10050.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:43 Download gff for BS10050.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:21 Download gff for BS10050.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 60..882 7..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:31 Download gff for BS10050.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 99..908 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:43 Download gff for BS10050.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 60..882 7..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:46 Download gff for BS10050.complete
Subject Subject Range Query Range Percent Splice Strand
Atg5-RA 99..908 17..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:46 Download gff for BS10050.complete
Subject Subject Range Query Range Percent Splice Strand
X 7315132..7315250 708..826 100 <- Minus
X 7322367..7322472 602..707 100 <- Minus
X 7322557..7322782 376..601 100 <- Minus
X 7323158..7323263 270..375 100 <- Minus
X 7323346..7323445 170..269 100 <- Minus
X 7323520..7323672 17..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:31 Download gff for BS10050.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7217553..7217705 17..169 100   Minus
arm_X 7217191..7217296 270..375 100 <- Minus
arm_X 7217379..7217478 170..269 100 <- Minus
arm_X 7209165..7209283 708..826 100 <- Minus
arm_X 7216400..7216505 602..707 100 <- Minus
arm_X 7216590..7216815 376..601 100 <- Minus

BS10050.pep Sequence

Translation from 16 to 825

> BS10050.pep
MAHDREVLRMIWEGQIGICFQADRDEIVGIKPEPFYLMISRLSYLPLVTD
KVRKYFSRYISAEHQDGAVWFDFNGTPLRLHYPIGVLYDLLHPEEDSTPW
CLTIHFSKFPEDMLVKLNSKELLESHYMSCLKEADVLKHRGLVISAMQKK
DHNQLWLGLVNEKFDQFWAVNRRLMEPYGDLESFKNIPLRIYTDDDFTYT
QKLISPISVGGQKKSLADLMAELSTPVRRAVGCRTHGIDLHEETQLQWMS
EHLSYPDNFLHLSVDYKDV*

BS10050.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Atg5-PA 269 CG1643-PA 1..269 1..269 1444 100 Plus