Clone Sequence Records
BS10053.3prime Sequence
936 bp (811 high quality bases) assembled on 2006-04-19
> BS10053.3prime
ATGGTCTAGAAAGCTTCTACATAGCCTGCACCAGCATTAGAAGGTCTTCC
TTTAAGTAGTTTATATCCGTTTGCAAAGGAGCGGGTGTATCATTGGCGCT
AAACAGCAGCAGAGTGTTCGGAATGAGTTTGCAGTCATATAGTGTCTTTT
CCAAGTCCTCATCGCCCAGTTTGCCATCGCTGTTGGACACCAAGCTAAAA
TCCAGGCTTTCGTCCGCCAGGCAAGATTGGACAAACTCGAACACATCGGA
TATTTTTTCGTACACATTGAAAGTGCCTTGTATAAAGAGTCCATTGGGAA
ATTTAACCCTGACTAAAGCGTATCGATACATGCGCAAATTGCGCTGCTCC
TCGCGTTCCCGCATCGCCTTTGTCCGCAGCATCTGTGACTGGGCAATGGC
CTCGGATCGCAGCTGTTGCTCTTTCTTGATCTCCTCCGGCGACAGGCGAT
AAAACTCGTCGGGGAGGGCGACACGACATGCCTGCGATGGAAGTAGGACC
TTAATGTTGCGATCCAGCTCCAGGGGAATAATCTCCGAGCTCTTGAGAGC
TTCCACTAGTGTGGGCAAGTCGAGATCCTTCTCCGTCTGCTCCTTGGTCC
ACAAAAGGAAGGGTTCGCCATCGATCTGGACCTCGTTGAAGCCCGCTGCT
TGCAGAACATCCAGGGCACCCTCCACGTAGCGCACCTTTTCGCTGAAGAT
TTTGTTGGACATCCGTATCTTGCAGAACTTCTCCTCCTCGGGATTCTTGA
TAAGATTCTCCAGATATCGGATTAGCGTGGCAATGCACTCGTCGGCCTTC
TCCTTAACATTGCAATTGTGGATGATCAGGCAAGCGGTGAGGCCGCGATC
TGCCCTCAGCTGCTGGGAGAGGAACTCTTTGATGCGAACTTCCACACGCT
CTTGGGTAGAATCTCCTCGCTGATTAGGGGGCAGCG
BS10053.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5469-PD | 1326 | Gint3-RD | 454..1326 | 889..17 | 4265 | 99.5 | Minus |
CG5469-PB | 1326 | Gint3-RB | 454..1326 | 889..17 | 4265 | 99.5 | Minus |
CG5469-PC | 1326 | Gint3-RC | 454..1326 | 889..17 | 4265 | 99.5 | Minus |
CG5469-PD | 1326 | Gint3-RD | 406..453 | 936..889 | 240 | 100 | Minus |
CG5469-PB | 1326 | Gint3-RB | 406..453 | 936..889 | 240 | 100 | Minus |
CG5469-PC | 1326 | Gint3-RC | 406..453 | 936..889 | 240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42306-RB | 2048 | CG42306-RB | 1009..1932 | 936..14 | 4535 | 99.5 | Minus |
CG42306-RA | 2399 | CG42306-RA | 1360..2283 | 936..14 | 4535 | 99.5 | Minus |
CG42306-RC | 1950 | CG42306-RC | 911..1834 | 936..14 | 4535 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18658919..18659579 | 277..936 | 3195 | 99.2 | Plus |
2R | 25286936 | 2R | 18658708..18658856 | 129..277 | 745 | 100 | Plus |
2R | 25286936 | 2R | 18658534..18658648 | 14..128 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 16:51:16 has no hits.
BS10053.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:54 Download gff for
BS10053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gint3-PB | 406..1326 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:36 Download gff for
BS10053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5469-PC | 406..1326 | 17..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:27:46 Download gff for
BS10053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gint3-RB | 1009..1932 | 14..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:21:38 Download gff for
BS10053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42306-RC | 911..1834 | 14..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:21:38 Download gff for
BS10053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18658534..18658648 | 14..128 | 100 | <- | Plus |
2R | 18658708..18658856 | 129..277 | 100 | <- | Plus |
2R | 18658920..18659579 | 278..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:27:46 Download gff for
BS10053.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14546039..14546153 | 14..128 | 100 | <- | Plus |
arm_2R | 14546213..14546361 | 129..277 | 100 | <- | Plus |
arm_2R | 14546425..14547084 | 278..936 | 99 | | Plus |
BS10053.5prime Sequence
910 bp (770 high quality bases) assembled on 2006-04-19
> BS10053.5prime
GAAGTTATCAGTCGACATGTCCAAGATTAAGAAGTTCTTTTCGCGGAAGA
AGGCGGAGGCTGCCTTTAAGCTCAATTTAACTGGCAGCGGCATGGGCACT
GGCCACAAGCTGAATTCCCCCAAACAGGAGACTCCTTCAAGTAGTTCCCG
CCAAAAGTATGAGGCCTATGTGCCACCAAAGCGAAATGAAATAAGTAACG
AGGCCAGGGCAGCTGCCAGTGCGGCACTGGCGCGCATTGACAAGAAAACA
TCCAGGGAATTCAATACCTCGCTGTCGGCAGTGAAGGCACAGGCTAAAAG
AGAGCTGGAGGCAGAGCGTCGCCAGAGAGAGGAAGCCATGGGCACGCCAT
CAACGACCAGCACATCCACATCGGCTTCCGGCGGCGACACTCGCAACCTG
GCCTGCGAAGGCGTCTTCTTCCGCTGCCCCCTAATCAGCGAGGAGATTCT
ACCCAAGAGCGTGTGGAAGGTTCGCATCAAAGAGTTCCTCTACCAGCAGC
TGGAGGCAGATCGCGGCCTCACCGCCTGCCTGATCATCCACAATTGCAAT
GTTAAGGAGAAGGCCGACGAGTGCATTGCCACGCTAATCCGATATCTGGA
GAATCTTATCAAGAATCCCGAGGAGGAGAAGTTCTGCAAGATACGGATGT
CCAACAAAATCTTCAGCGAAAAGGTGCGCTACGTGGAGGGTGCCCTGGAT
GTTCTGCAAGCAGCGGGCTTCAACGAGGTCCAGATCGATGGCGAACCCTT
CCTTTTGTGGACCAAGGAGCAGACGGAGAAGGATCTCGACTTGCCCACAC
TAGTGGAAGCTCTCAAGAGCTCGGAGATTATTCCCCTGGAGCTGGATCGC
AACATTAAAGTCCTACTTCAATCGCAAGCATGTCGTGTCGCCCTCCCCGA
CGAGTTTTAT
BS10053.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5469-PD | 1326 | Gint3-RD | 1..894 | 17..910 | 4395 | 99.6 | Plus |
CG5469-PB | 1326 | Gint3-RB | 1..894 | 17..910 | 4395 | 99.6 | Plus |
CG5469-PC | 1326 | Gint3-RC | 1..894 | 17..910 | 4395 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42306-RB | 2048 | CG42306-RB | 603..1497 | 16..910 | 4430 | 99.7 | Plus |
CG42306-RA | 2399 | CG42306-RA | 954..1848 | 16..910 | 4430 | 99.7 | Plus |
CG42306-RC | 1950 | CG42306-RC | 505..1399 | 16..910 | 4430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18659091..18659932 | 910..69 | 4165 | 99.6 | Minus |
2R | 25286936 | 2R | 18659986..18660040 | 70..16 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:04:54 has no hits.
BS10053.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:55 Download gff for
BS10053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gint3-PB | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:38 Download gff for
BS10053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5469-PC | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:47:55 Download gff for
BS10053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gint3-RB | 603..1497 | 16..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:00 Download gff for
BS10053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42306-RC | 505..1399 | 16..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:00 Download gff for
BS10053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18659091..18659930 | 71..910 | 99 | <- | Minus |
2R | 18659986..18660040 | 16..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:47:55 Download gff for
BS10053.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14546596..14547435 | 71..910 | 99 | <- | Minus |
arm_2R | 14547491..14547545 | 16..70 | 100 | | Minus |
BS10053.complete Sequence
1358 bp (1358 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636543
> BS10053.complete
GAAGTTATCAGTCGACATGTCCAAGATTAAGAAGTTCTTTTCGCGGAAGA
AGGCGGAGGCTGCCTTTAAGCTCAATTTAACTGGCAGCGGCATGGGCACT
GGCCACAAGCTGAATTCCCCCAAACAGGAGACTCCTTCAAGTAGTTCCCG
CCAAAAGTATGAGGCCTATGTGCCACCAAAGCGAAATGAAATAAGTAACG
AGGCCAGGGCAGCTGCCAGTGCGGCACTGGCGCGCATTGACAAGAAAACA
TCCAGGGAATTCAATACCTCGCTGTCGGCAGTGAAGGCACAGGCTAAAAG
AGAGCTGGAGGCAGAGCGTCGCCAGAGAGAGGAAGCCATGGGCACGCCAT
CAACGACCAGCACATCCACATCGGCTTCCGGCGGCGACACTCGCAACCTG
GCCTGCGAAGGCGTCTTCTTCCGCTGCCCCCTAATCAGCGAGGAGATTCT
ACCCAAGAGCGTGTGGAAGGTTCGCATCAAAGAGTTCCTCTACCAGCAGC
TGGAGGCAGATCGCGGCCTCACCGCCTGCCTGATCATCCACAATTGCAAT
GTTAAGGAGAAGGCCGACGAGTGCATTGCCACGCTAATCCGATATCTGGA
GAATCTTATCAAGAATCCCGAGGAGGAGAAGTTCTGCAAGATACGGATGT
CCAACAAAATCTTCAGCGAAAAGGTGCGCTACGTGGAGGGTGCCCTGGAT
GTTCTGCAAGCAGCGGGCTTCAACGAGGTCCAGATCGATGGCGAACCCTT
CCTTTTGTGGACCAAGGAGCAGACGGAGAAGGATCTCGACTTGCCCACAC
TAGTGGAAGCTCTCAAGAGCTCGGAGATTATTCCCCTGGAGCTGGATCGC
AACATTAAGGTCCTACTTCCATCGCAGGCATGTCGTGTCGCCCTCCCCGA
CGAGTTTTATCGCCTGTCGCCGGAGGAGATCAAGAAAGAGCAACAGCTGC
GATCCGAGGCCATTGCCCAGTCACAGATGCTGCGGACAAAGGCGATGCGG
GAACGCGAGGAGCAGCGCAATTTGCGCATGTATCGATACGCTTTAGTCAG
GGTTAAATTTCCCAATGGACTCTTTATACAAGGCACTTTCAATGTGTACG
AAAAAATATCCGATGTGTTCGAGTTTGTCCAATCTTGCCTGGCGGACGAA
AGCCTGGATTTTAGCTTGGTGTCCAACAGCGATGGCAAACTGGGCGATGA
GGACTTGGAAAAGACACTATATGACTGCAAACTCATTCCGAACACTCTGC
TGCTGTTTAGCGCCAATGATACACCCGCTCCTTTGCAAACGGATATAAAC
TACTTAAAGGAAGACCTTCTAATGCTGGTGCAGGCTATGTAGAAGCTTTC
TAGACCAT
BS10053.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gint3-RE | 1326 | CG5469-PE | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Gint3-RB | 1326 | CG5469-PB | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Gint3-RD | 1326 | CG5469-PD | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42306-RB | 2048 | CG42306-RB | 603..1932 | 16..1345 | 6650 | 100 | Plus |
CG42306-RA | 2399 | CG42306-RA | 954..2283 | 16..1345 | 6650 | 100 | Plus |
CG42306-RC | 1950 | CG42306-RC | 505..1834 | 16..1345 | 6650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18658919..18659932 | 1082..69 | 5070 | 100 | Minus |
2R | 25286936 | 2R | 18658708..18658856 | 1230..1082 | 745 | 100 | Minus |
2R | 25286936 | 2R | 18658534..18658648 | 1345..1231 | 575 | 100 | Minus |
2R | 25286936 | 2R | 18659986..18660040 | 70..16 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:43:25 has no hits.
BS10053.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:35 Download gff for
BS10053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gint3-RC | 1..1326 | 17..1342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:18 Download gff for
BS10053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gint3-RC | 165..1494 | 16..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:04 Download gff for
BS10053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gint3-RB | 604..1929 | 17..1342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:35 Download gff for
BS10053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gint3-RC | 165..1494 | 16..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:21 Download gff for
BS10053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42306-RC | 506..1831 | 17..1342 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:21 Download gff for
BS10053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18658537..18658648 | 1231..1342 | 100 | <- | Minus |
2R | 18658708..18658856 | 1082..1230 | 100 | <- | Minus |
2R | 18658920..18659930 | 71..1081 | 100 | <- | Minus |
2R | 18659986..18660039 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:04 Download gff for
BS10053.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14546042..14546153 | 1231..1342 | 100 | <- | Minus |
arm_2R | 14546213..14546361 | 1082..1230 | 100 | <- | Minus |
arm_2R | 14546425..14547435 | 71..1081 | 100 | <- | Minus |
arm_2R | 14547491..14547544 | 17..70 | 100 | | Minus |
BS10053.pep Sequence
Translation from 16 to 1341
> BS10053.pep
MSKIKKFFSRKKAEAAFKLNLTGSGMGTGHKLNSPKQETPSSSSRQKYEA
YVPPKRNEISNEARAAASAALARIDKKTSREFNTSLSAVKAQAKRELEAE
RRQREEAMGTPSTTSTSTSASGGDTRNLACEGVFFRCPLISEEILPKSVW
KVRIKEFLYQQLEADRGLTACLIIHNCNVKEKADECIATLIRYLENLIKN
PEEEKFCKIRMSNKIFSEKVRYVEGALDVLQAAGFNEVQIDGEPFLLWTK
EQTEKDLDLPTLVEALKSSEIIPLELDRNIKVLLPSQACRVALPDEFYRL
SPEEIKKEQQLRSEAIAQSQMLRTKAMREREEQRNLRMYRYALVRVKFPN
GLFIQGTFNVYEKISDVFEFVQSCLADESLDFSLVSNSDGKLGDEDLEKT
LYDCKLIPNTLLLFSANDTPAPLQTDINYLKEDLLMLVQAM*
BS10053.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gint3-PE | 441 | CG5469-PE | 1..441 | 1..441 | 2228 | 100 | Plus |
Gint3-PB | 441 | CG5469-PB | 1..441 | 1..441 | 2228 | 100 | Plus |
Gint3-PD | 441 | CG5469-PD | 1..441 | 1..441 | 2228 | 100 | Plus |