Clone BS10053 Report

Search the DGRC for BS10053

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptGint3-RB
Protein status:BS10053.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10053.3prime Sequence

936 bp (811 high quality bases) assembled on 2006-04-19

> BS10053.3prime
ATGGTCTAGAAAGCTTCTACATAGCCTGCACCAGCATTAGAAGGTCTTCC
TTTAAGTAGTTTATATCCGTTTGCAAAGGAGCGGGTGTATCATTGGCGCT
AAACAGCAGCAGAGTGTTCGGAATGAGTTTGCAGTCATATAGTGTCTTTT
CCAAGTCCTCATCGCCCAGTTTGCCATCGCTGTTGGACACCAAGCTAAAA
TCCAGGCTTTCGTCCGCCAGGCAAGATTGGACAAACTCGAACACATCGGA
TATTTTTTCGTACACATTGAAAGTGCCTTGTATAAAGAGTCCATTGGGAA
ATTTAACCCTGACTAAAGCGTATCGATACATGCGCAAATTGCGCTGCTCC
TCGCGTTCCCGCATCGCCTTTGTCCGCAGCATCTGTGACTGGGCAATGGC
CTCGGATCGCAGCTGTTGCTCTTTCTTGATCTCCTCCGGCGACAGGCGAT
AAAACTCGTCGGGGAGGGCGACACGACATGCCTGCGATGGAAGTAGGACC
TTAATGTTGCGATCCAGCTCCAGGGGAATAATCTCCGAGCTCTTGAGAGC
TTCCACTAGTGTGGGCAAGTCGAGATCCTTCTCCGTCTGCTCCTTGGTCC
ACAAAAGGAAGGGTTCGCCATCGATCTGGACCTCGTTGAAGCCCGCTGCT
TGCAGAACATCCAGGGCACCCTCCACGTAGCGCACCTTTTCGCTGAAGAT
TTTGTTGGACATCCGTATCTTGCAGAACTTCTCCTCCTCGGGATTCTTGA
TAAGATTCTCCAGATATCGGATTAGCGTGGCAATGCACTCGTCGGCCTTC
TCCTTAACATTGCAATTGTGGATGATCAGGCAAGCGGTGAGGCCGCGATC
TGCCCTCAGCTGCTGGGAGAGGAACTCTTTGATGCGAACTTCCACACGCT
CTTGGGTAGAATCTCCTCGCTGATTAGGGGGCAGCG

BS10053.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5469-PD 1326 Gint3-RD 454..1326 889..17 4265 99.5 Minus
CG5469-PB 1326 Gint3-RB 454..1326 889..17 4265 99.5 Minus
CG5469-PC 1326 Gint3-RC 454..1326 889..17 4265 99.5 Minus
CG5469-PD 1326 Gint3-RD 406..453 936..889 240 100 Minus
CG5469-PB 1326 Gint3-RB 406..453 936..889 240 100 Minus
CG5469-PC 1326 Gint3-RC 406..453 936..889 240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG42306-RB 2048 CG42306-RB 1009..1932 936..14 4535 99.5 Minus
CG42306-RA 2399 CG42306-RA 1360..2283 936..14 4535 99.5 Minus
CG42306-RC 1950 CG42306-RC 911..1834 936..14 4535 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18658919..18659579 277..936 3195 99.2 Plus
2R 25286936 2R 18658708..18658856 129..277 745 100 Plus
2R 25286936 2R 18658534..18658648 14..128 575 100 Plus
Blast to na_te.dros performed on 2015-02-06 16:51:16 has no hits.

BS10053.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:54 Download gff for BS10053.3prime
Subject Subject Range Query Range Percent Splice Strand
Gint3-PB 406..1326 17..936 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:36 Download gff for BS10053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5469-PC 406..1326 17..936 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:27:46 Download gff for BS10053.3prime
Subject Subject Range Query Range Percent Splice Strand
Gint3-RB 1009..1932 14..936 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:21:38 Download gff for BS10053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42306-RC 911..1834 14..936 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:21:38 Download gff for BS10053.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18658534..18658648 14..128 100 <- Plus
2R 18658708..18658856 129..277 100 <- Plus
2R 18658920..18659579 278..936 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:27:46 Download gff for BS10053.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14546039..14546153 14..128 100 <- Plus
arm_2R 14546213..14546361 129..277 100 <- Plus
arm_2R 14546425..14547084 278..936 99   Plus

BS10053.5prime Sequence

910 bp (770 high quality bases) assembled on 2006-04-19

> BS10053.5prime
GAAGTTATCAGTCGACATGTCCAAGATTAAGAAGTTCTTTTCGCGGAAGA
AGGCGGAGGCTGCCTTTAAGCTCAATTTAACTGGCAGCGGCATGGGCACT
GGCCACAAGCTGAATTCCCCCAAACAGGAGACTCCTTCAAGTAGTTCCCG
CCAAAAGTATGAGGCCTATGTGCCACCAAAGCGAAATGAAATAAGTAACG
AGGCCAGGGCAGCTGCCAGTGCGGCACTGGCGCGCATTGACAAGAAAACA
TCCAGGGAATTCAATACCTCGCTGTCGGCAGTGAAGGCACAGGCTAAAAG
AGAGCTGGAGGCAGAGCGTCGCCAGAGAGAGGAAGCCATGGGCACGCCAT
CAACGACCAGCACATCCACATCGGCTTCCGGCGGCGACACTCGCAACCTG
GCCTGCGAAGGCGTCTTCTTCCGCTGCCCCCTAATCAGCGAGGAGATTCT
ACCCAAGAGCGTGTGGAAGGTTCGCATCAAAGAGTTCCTCTACCAGCAGC
TGGAGGCAGATCGCGGCCTCACCGCCTGCCTGATCATCCACAATTGCAAT
GTTAAGGAGAAGGCCGACGAGTGCATTGCCACGCTAATCCGATATCTGGA
GAATCTTATCAAGAATCCCGAGGAGGAGAAGTTCTGCAAGATACGGATGT
CCAACAAAATCTTCAGCGAAAAGGTGCGCTACGTGGAGGGTGCCCTGGAT
GTTCTGCAAGCAGCGGGCTTCAACGAGGTCCAGATCGATGGCGAACCCTT
CCTTTTGTGGACCAAGGAGCAGACGGAGAAGGATCTCGACTTGCCCACAC
TAGTGGAAGCTCTCAAGAGCTCGGAGATTATTCCCCTGGAGCTGGATCGC
AACATTAAAGTCCTACTTCAATCGCAAGCATGTCGTGTCGCCCTCCCCGA
CGAGTTTTAT

BS10053.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5469-PD 1326 Gint3-RD 1..894 17..910 4395 99.6 Plus
CG5469-PB 1326 Gint3-RB 1..894 17..910 4395 99.6 Plus
CG5469-PC 1326 Gint3-RC 1..894 17..910 4395 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG42306-RB 2048 CG42306-RB 603..1497 16..910 4430 99.7 Plus
CG42306-RA 2399 CG42306-RA 954..1848 16..910 4430 99.7 Plus
CG42306-RC 1950 CG42306-RC 505..1399 16..910 4430 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18659091..18659932 910..69 4165 99.6 Minus
2R 25286936 2R 18659986..18660040 70..16 275 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:04:54 has no hits.

BS10053.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:55 Download gff for BS10053.5prime
Subject Subject Range Query Range Percent Splice Strand
Gint3-PB 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:38 Download gff for BS10053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5469-PC 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:47:55 Download gff for BS10053.5prime
Subject Subject Range Query Range Percent Splice Strand
Gint3-RB 603..1497 16..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:00 Download gff for BS10053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42306-RC 505..1399 16..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:00 Download gff for BS10053.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18659091..18659930 71..910 99 <- Minus
2R 18659986..18660040 16..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:47:55 Download gff for BS10053.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14546596..14547435 71..910 99 <- Minus
arm_2R 14547491..14547545 16..70 100   Minus

BS10053.complete Sequence

1358 bp (1358 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636543

> BS10053.complete
GAAGTTATCAGTCGACATGTCCAAGATTAAGAAGTTCTTTTCGCGGAAGA
AGGCGGAGGCTGCCTTTAAGCTCAATTTAACTGGCAGCGGCATGGGCACT
GGCCACAAGCTGAATTCCCCCAAACAGGAGACTCCTTCAAGTAGTTCCCG
CCAAAAGTATGAGGCCTATGTGCCACCAAAGCGAAATGAAATAAGTAACG
AGGCCAGGGCAGCTGCCAGTGCGGCACTGGCGCGCATTGACAAGAAAACA
TCCAGGGAATTCAATACCTCGCTGTCGGCAGTGAAGGCACAGGCTAAAAG
AGAGCTGGAGGCAGAGCGTCGCCAGAGAGAGGAAGCCATGGGCACGCCAT
CAACGACCAGCACATCCACATCGGCTTCCGGCGGCGACACTCGCAACCTG
GCCTGCGAAGGCGTCTTCTTCCGCTGCCCCCTAATCAGCGAGGAGATTCT
ACCCAAGAGCGTGTGGAAGGTTCGCATCAAAGAGTTCCTCTACCAGCAGC
TGGAGGCAGATCGCGGCCTCACCGCCTGCCTGATCATCCACAATTGCAAT
GTTAAGGAGAAGGCCGACGAGTGCATTGCCACGCTAATCCGATATCTGGA
GAATCTTATCAAGAATCCCGAGGAGGAGAAGTTCTGCAAGATACGGATGT
CCAACAAAATCTTCAGCGAAAAGGTGCGCTACGTGGAGGGTGCCCTGGAT
GTTCTGCAAGCAGCGGGCTTCAACGAGGTCCAGATCGATGGCGAACCCTT
CCTTTTGTGGACCAAGGAGCAGACGGAGAAGGATCTCGACTTGCCCACAC
TAGTGGAAGCTCTCAAGAGCTCGGAGATTATTCCCCTGGAGCTGGATCGC
AACATTAAGGTCCTACTTCCATCGCAGGCATGTCGTGTCGCCCTCCCCGA
CGAGTTTTATCGCCTGTCGCCGGAGGAGATCAAGAAAGAGCAACAGCTGC
GATCCGAGGCCATTGCCCAGTCACAGATGCTGCGGACAAAGGCGATGCGG
GAACGCGAGGAGCAGCGCAATTTGCGCATGTATCGATACGCTTTAGTCAG
GGTTAAATTTCCCAATGGACTCTTTATACAAGGCACTTTCAATGTGTACG
AAAAAATATCCGATGTGTTCGAGTTTGTCCAATCTTGCCTGGCGGACGAA
AGCCTGGATTTTAGCTTGGTGTCCAACAGCGATGGCAAACTGGGCGATGA
GGACTTGGAAAAGACACTATATGACTGCAAACTCATTCCGAACACTCTGC
TGCTGTTTAGCGCCAATGATACACCCGCTCCTTTGCAAACGGATATAAAC
TACTTAAAGGAAGACCTTCTAATGCTGGTGCAGGCTATGTAGAAGCTTTC
TAGACCAT

BS10053.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Gint3-RE 1326 CG5469-PE 1..1326 17..1342 6630 100 Plus
Gint3-RB 1326 CG5469-PB 1..1326 17..1342 6630 100 Plus
Gint3-RD 1326 CG5469-PD 1..1326 17..1342 6630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG42306-RB 2048 CG42306-RB 603..1932 16..1345 6650 100 Plus
CG42306-RA 2399 CG42306-RA 954..2283 16..1345 6650 100 Plus
CG42306-RC 1950 CG42306-RC 505..1834 16..1345 6650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18658919..18659932 1082..69 5070 100 Minus
2R 25286936 2R 18658708..18658856 1230..1082 745 100 Minus
2R 25286936 2R 18658534..18658648 1345..1231 575 100 Minus
2R 25286936 2R 18659986..18660040 70..16 275 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:43:25 has no hits.

BS10053.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:35 Download gff for BS10053.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RC 1..1326 17..1342 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:18 Download gff for BS10053.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RC 165..1494 16..1345 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:04 Download gff for BS10053.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RB 604..1929 17..1342 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:35 Download gff for BS10053.complete
Subject Subject Range Query Range Percent Splice Strand
Gint3-RC 165..1494 16..1345 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:21 Download gff for BS10053.complete
Subject Subject Range Query Range Percent Splice Strand
CG42306-RC 506..1831 17..1342 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:21 Download gff for BS10053.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18658537..18658648 1231..1342 100 <- Minus
2R 18658708..18658856 1082..1230 100 <- Minus
2R 18658920..18659930 71..1081 100 <- Minus
2R 18659986..18660039 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:04 Download gff for BS10053.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14546042..14546153 1231..1342 100 <- Minus
arm_2R 14546213..14546361 1082..1230 100 <- Minus
arm_2R 14546425..14547435 71..1081 100 <- Minus
arm_2R 14547491..14547544 17..70 100   Minus

BS10053.pep Sequence

Translation from 16 to 1341

> BS10053.pep
MSKIKKFFSRKKAEAAFKLNLTGSGMGTGHKLNSPKQETPSSSSRQKYEA
YVPPKRNEISNEARAAASAALARIDKKTSREFNTSLSAVKAQAKRELEAE
RRQREEAMGTPSTTSTSTSASGGDTRNLACEGVFFRCPLISEEILPKSVW
KVRIKEFLYQQLEADRGLTACLIIHNCNVKEKADECIATLIRYLENLIKN
PEEEKFCKIRMSNKIFSEKVRYVEGALDVLQAAGFNEVQIDGEPFLLWTK
EQTEKDLDLPTLVEALKSSEIIPLELDRNIKVLLPSQACRVALPDEFYRL
SPEEIKKEQQLRSEAIAQSQMLRTKAMREREEQRNLRMYRYALVRVKFPN
GLFIQGTFNVYEKISDVFEFVQSCLADESLDFSLVSNSDGKLGDEDLEKT
LYDCKLIPNTLLLFSANDTPAPLQTDINYLKEDLLMLVQAM*

BS10053.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
Gint3-PE 441 CG5469-PE 1..441 1..441 2228 100 Plus
Gint3-PB 441 CG5469-PB 1..441 1..441 2228 100 Plus
Gint3-PD 441 CG5469-PD 1..441 1..441 2228 100 Plus