Clone Sequence Records
BS10056.3prime Sequence
991 bp (850 high quality bases) assembled on 2006-04-19
> BS10056.3prime
ATGGTCTAGAAAGCTTTCACCAGCTCAACTCATCGGGCAGCCCACCGGGA
TATTCACCAGTGAGACAGGCGGTGCAGTGGCCCGTTCCCTTGGATTTACT
ATCGCCTGCATCGCGGTGCTTTAGTTGGACAGCCTCCACTAGTCCCTCCA
CACTAAGATAAGCCAGACTGTCGGCGCCCACATGCCTAGCTAGTTGGTCG
GGGTTCAGCTTGTTGGCAATCAATTCCTCTCGAGTTGGAATATTTATACC
CATATAGCATGGGTACTGCAGCGGTGGGCTGGCAATGCGGATGTGCACCT
CCCGGGCGCCTGCATCCCGTAGCAGCTTGATTATTGGTCCAATGGTGTTG
CCGCGCACAATGGAATCGTCTATCAGGACCAATCTCTTGCCAGCCACGTT
CTCGGATAGGGCTCCGAACTTCTTGGCTACTCCCAACTGCCGCAGCCGGG
TAGAGGGTTGAATAAACGTCCGTCCCACGTAGCGATTCCTGCAGAGAACC
TCGGCAAATTCAATGCCAGACTCACGGGCATAGCCATGCGCCGCCGCTGT
GCCAGACTCGGGAACGGAACTCACAATATCCGCCTCCACTGGAGCCTCTC
GCCACAGCTGCCGGCCGCACTGCAGCCTCACTGTGTACACCATCTGACCC
TCGAAGATGCTGTCTCCGCGGGCGAAGTAAACGTACTCAAATATACAAAA
GGCCATGCGCTTGAAGTCGGGTCTTTCCACAATGTCCACCGTGCGGTAGC
CACTTCGCGACAGCTCCACTATCTCTCCAGGCTCCACTTCGCGGACGTAT
CTGGCACCGATCGACAGGAAGCCACAGCTCTCACTGGACACCACCCAACC
ATCGGCAGGTGTGTCTAAGTTATTTCCGTGCCCAGCATTGATGGGCACTA
TCTTGCCAATGCATAGCGGCCTATTTCCATAGGTGTCCCTCACGGCGTAG
ATTTTGTCCTTTAGCATGATGACCAGCGAGTAGGAGAGTGG
BS10056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2867-PA | 1641 | Prat-RA | 667..1641 | 991..17 | 4875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-RB | 2105 | CG2867-RB | 760..1734 | 991..17 | 4875 | 100 | Minus |
| Prat-RA | 2102 | CG2867-RA | 757..1731 | 991..17 | 4875 | 100 | Minus |
| Prat2-RA | 1737 | CG10078-RA | 671..1536 | 991..126 | 1075 | 75.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7909969..7910943 | 17..991 | 4875 | 100 | Plus |
| 3L | 28110227 | 3L | 6912200..6913065 | 126..991 | 1075 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:05:20 has no hits.
BS10056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:27:59 Download gff for
BS10056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-PA | 667..1641 | 17..991 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:43 Download gff for
BS10056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2867-PA | 667..1641 | 17..991 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:52:14 Download gff for
BS10056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 757..1731 | 17..991 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:23 Download gff for
BS10056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 757..1731 | 17..991 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:23 Download gff for
BS10056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7909969..7910943 | 17..991 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:52:14 Download gff for
BS10056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3735691..3736665 | 17..991 | 100 | | Plus |
BS10056.5prime Sequence
915 bp (870 high quality bases) assembled on 2006-04-19
> BS10056.5prime
GAAGTTATCAGTCGACATGTCAGCGCCACAGCAACAACAACAGTCGCAGC
AGAAGCAACAACAACATGTGCGCGTGGTCGAGCAACAACAGGTGGAACCA
GCTGAGGCGGTGACCTCCAGCATGGAATCGGAATCCATCTCGGCCAGCAA
GGAGCTAACCGGTTTGACGCACGAGTGCGGCGTTTTCGGGGCAATCGCTT
GCGGAGATTGGCCCACCCAAATGGACATTGCACACGTGATCTGTTTGGGG
CTGGTGGCACTGCAGCATCGTGGGCAGGAGTCTGCGGGCATAGCGACCAG
CGAGGGAAAGTGCTCCAAGAACTTCAACGTGCACAAGGGCATGGGTATGA
TCAGCACCCTGTTCAACGACGACTCCATGAAGAAGCTTCGTGGCAACCTG
GGCATCGGTCATACACGCTACTCGACCGCTGGCGGATCCGGAGTGGTTAA
CTGTCAGCCCTTTGAGGTACATACGACACATGGAGCATTGGCCCTGGCCC
ACAATGGTGAGCTTGTTAACAACGAATCTCTAAGAAGGGAGGTTTTGGCC
AGAGGCGTGGGCTTATCCACGCACAGCGACAGTGAGTTGATCGCCCAGTC
GTTGTGCTGCGCCCCGGAGGATGTTTCCGAACTGGATGGACCCAACTGGC
CAGCTAGGATCAGGCATTTCATGATGCTGGCGCCACTCTCCTACTCGCTG
GTCATCATGCTAAAGGACAAAATCTACGCCGTGAGGGACACCTATGGAAA
TAGGCCGCTATGCATTGGCAAGATAGTGCCCATCAATGCTGGGCACGGAA
ATAACTTAGACACACCTGCCGATGGTTGGGTGGTGTCCAGTGAGAGCTGT
GGCTTCCTGTCGATCGGTGCCAGATACGTCCGCGAAGTGGAGCCTGAAGA
GATAGTGGAGCTGTC
BS10056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2867-PA | 1641 | Prat-RA | 1..899 | 17..915 | 4470 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-RB | 2105 | CG2867-RB | 92..992 | 15..915 | 4490 | 99.9 | Plus |
| Prat-RA | 2102 | CG2867-RA | 89..989 | 15..915 | 4490 | 99.9 | Plus |
| Prat2-RB | 1932 | CG10078-RB | 355..1098 | 172..915 | 1065 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7910711..7911611 | 915..15 | 4490 | 99.9 | Minus |
| 3L | 28110227 | 3L | 6912833..6913526 | 915..222 | 995 | 76.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:53:12 has no hits.
BS10056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:00 Download gff for
BS10056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:44 Download gff for
BS10056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2867-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:21 Download gff for
BS10056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 77..989 | 2..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:21:25 Download gff for
BS10056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 77..989 | 2..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:21:25 Download gff for
BS10056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7910711..7911616 | 9..915 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:21 Download gff for
BS10056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3736433..3737338 | 9..915 | 99 | | Minus |
BS10056.complete Sequence
1673 bp (1673 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636544
> BS10056.complete
GAAGTTATCAGTCGACATGTCAGCGCCACAGCAACAACAACAGTCGCAGC
AGAAGCAACAACAACATGTGCGCGTGGTCGAGCAACAACAGGTGGAACCA
GCTGAGGCGGTGACCTCCAGCATGGAATCGGAATCCATCTCGGCCAGCAA
GGAGCTAACCGGTTTGACGCACGAGTGCGGCGTTTTCGGGGCAATCGCTT
GCGGAGATTGGCCCACCCAAATGGACATTGCACACGTGATCTGTTTGGGG
CTGGTGGCACTGCAGCATCGTGGGCAGGAGTCTGCGGGCATAGCGACCAG
CGAGGGAAAGTGCTCCAAGAACTTCAACGTGCACAAGGGCATGGGTATGA
TCAGCACCCTGTTCAACGACGACTCCATGAAGAAGCTTCGTGGCAACCTG
GGCATCGGTCATACACGCTACTCGACCGCTGGCGGATCCGGAGTGGTTAA
CTGTCAGCCCTTTGAGGTACATACGACACATGGAGCATTGGCCCTGGCCC
ACAATGGTGAGCTTGTTAACAACGAATCTCTAAGAAGGGAGGTTTTGGCC
AGAGGCGTGGGCTTATCCACGCACAGCGACAGTGAGTTGATCGCCCAGTC
GTTGTGCTGCGCCCCGGAGGATGTTTCCGAACTGGATGGACCCAACTGGC
CAGCTAGGATCAGGCATTTCATGATGCTGGCGCCACTCTCCTACTCGCTG
GTCATCATGCTAAAGGACAAAATCTACGCCGTGAGGGACACCTATGGAAA
TAGGCCGCTATGCATTGGCAAGATAGTGCCCATCAATGCTGGGCACGGAA
ATAACTTAGACACACCTGCCGATGGTTGGGTGGTGTCCAGTGAGAGCTGT
GGCTTCCTGTCGATCGGTGCCAGATACGTCCGCGAAGTGGAGCCTGGAGA
GATAGTGGAGCTGTCGCGAAGTGGCTACCGCACGGTGGACATTGTGGAAA
GACCCGACTTCAAGCGCATGGCCTTTTGTATATTTGAGTACGTTTACTTC
GCCCGCGGAGACAGCATCTTCGAGGGTCAGATGGTGTACACAGTGAGGCT
GCAGTGCGGCCGGCAGCTGTGGCGAGAGGCTCCAGTGGAGGCGGATATTG
TGAGTTCCGTTCCCGAGTCTGGCACAGCGGCGGCGCATGGCTATGCCCGT
GAGTCTGGCATTGAATTTGCCGAGGTTCTCTGCAGGAATCGCTACGTGGG
ACGGACGTTTATTCAACCCTCTACCCGGCTGCGGCAGTTGGGAGTAGCCA
AGAAGTTCGGAGCCCTATCCGAGAACGTGGCTGGCAAGAGATTGGTCCTG
ATAGACGATTCCATTGTGCGCGGCAACACCATTGGACCAATAATCAAGCT
GCTACGGGATGCAGGCGCCCGGGAGGTGCACATCCGCATTGCCAGCCCAC
CGCTGCAGTACCCATGCTATATGGGTATAAATATTCCAACTCGAGAGGAA
TTGATTGCCAACAAGCTGAACCCCGACCAACTAGCTAGGCATGTGGGCGC
CGACAGTCTGGCTTATCTTAGTGTGGAGGGACTAGTGGAGGCTGTCCAAC
TAAAGCACCGCGATGCAGGCGATAGTAAATCCAAGGGAACGGGCCACTGC
ACCGCCTGTCTCACTGGTGAATATCCCGGTGGGCTGCCCGATGAGTTGAG
CTGGTGAAAGCTTTCTAGACCAT
BS10056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-RB | 1641 | CG2867-PB | 1..1641 | 17..1657 | 8205 | 100 | Plus |
| Prat-RA | 1641 | CG2867-PA | 1..1641 | 17..1657 | 8205 | 100 | Plus |
| Prat2-RB | 1644 | CG10078-PB | 168..1544 | 172..1548 | 1830 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-RB | 2105 | CG2867-RB | 92..1734 | 15..1657 | 8215 | 100 | Plus |
| Prat-RA | 2102 | CG2867-RA | 89..1731 | 15..1657 | 8215 | 100 | Plus |
| Prat2-RB | 1932 | CG10078-RB | 355..1731 | 172..1548 | 1830 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7909969..7911611 | 1657..15 | 8215 | 100 | Minus |
| 3L | 28110227 | 3L | 6912200..6913526 | 1548..222 | 1760 | 75.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:15:16 has no hits.
BS10056.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:21 Download gff for
BS10056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 1..1641 | 17..1657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:01 Download gff for
BS10056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 82..1734 | 3..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:27 Download gff for
BS10056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 91..1730 | 17..1656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:21 Download gff for
BS10056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 82..1734 | 3..1657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:08 Download gff for
BS10056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat-RA | 91..1730 | 17..1656 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:08 Download gff for
BS10056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7909970..7911609 | 17..1656 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:27 Download gff for
BS10056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3735692..3737331 | 17..1656 | 100 | | Minus |
BS10056.pep Sequence
Translation from 16 to 1656
> BS10056.pep
MSAPQQQQQSQQKQQQHVRVVEQQQVEPAEAVTSSMESESISASKELTGL
THECGVFGAIACGDWPTQMDIAHVICLGLVALQHRGQESAGIATSEGKCS
KNFNVHKGMGMISTLFNDDSMKKLRGNLGIGHTRYSTAGGSGVVNCQPFE
VHTTHGALALAHNGELVNNESLRREVLARGVGLSTHSDSELIAQSLCCAP
EDVSELDGPNWPARIRHFMMLAPLSYSLVIMLKDKIYAVRDTYGNRPLCI
GKIVPINAGHGNNLDTPADGWVVSSESCGFLSIGARYVREVEPGEIVELS
RSGYRTVDIVERPDFKRMAFCIFEYVYFARGDSIFEGQMVYTVRLQCGRQ
LWREAPVEADIVSSVPESGTAAAHGYARESGIEFAEVLCRNRYVGRTFIQ
PSTRLRQLGVAKKFGALSENVAGKRLVLIDDSIVRGNTIGPIIKLLRDAG
AREVHIRIASPPLQYPCYMGINIPTREELIANKLNPDQLARHVGADSLAY
LSVEGLVEAVQLKHRDAGDSKSKGTGHCTACLTGEYPGGLPDELSW*
BS10056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat-PB | 546 | CG2867-PB | 1..546 | 1..546 | 2848 | 100 | Plus |
| Prat-PA | 546 | CG2867-PA | 1..546 | 1..546 | 2848 | 100 | Plus |
| Prat2-PB | 547 | CG10078-PB | 49..547 | 45..546 | 2212 | 83.5 | Plus |
| Prat2-PA | 470 | CG10078-PA | 1..470 | 74..546 | 2097 | 84.4 | Plus |
