Clone Sequence Records
BS10057.3prime Sequence
909 bp (791 high quality bases) assembled on 2006-04-19
> BS10057.3prime
ATGGTCTAGAAAGCTTTCACTCAACTAAGACCACATAATTTTGCGCCGCC
ACGGAGGGATGCATCTTAGGTGTCTTTGTCTCCACATAGGTGGGCTTATG
GGCTACCTCGCTATTGTCCATTGAAATCCCAATGAGCATATCCACAGCAC
CCTTCATCCGCATCAGCTCGGCGGTGAGCCTCACCTCCTCCTGCATTGCA
AGTGACAATCGTTGCAAGGCTTTCATCAGCTTCTGGCTGTAGGCCACCAA
TCGTTGCTCGAAGACATCAAGGACCGTGCTCGCGGCCATCATCAGCGGGC
GCATGAATCGCACCTCGCCCAAGTGGTTGCAAATGAAGTCGATGAATCGG
ACAAGCGCTGCCTCATGACGACCCGTGAGGGCTTTTCCCAGTGATCCACG
GTGCAGAAGGTCCGTGATGACAGCCACAATGAGCTCCGGCTGGTATTGCA
TCTTCTGCGCATTCATCACGTCGTCCAAAGCCTTCTTGTGGTTAAACTGG
CGCAAGTGCACATCGTAGGATTTCAATCCAGGCCCCTTGACGTGGTCCTT
GATGGTGTGATCAACCTCTTGGGTGTTGTTCGTGCGTTTCGTACTCACGA
AGTACTTTCGAGCGCGATCCGCACGAATCTTTTTCAAATGACTGGGCTTG
CTGTCTACCATCATGCGACGAATGGAGACTAGACCATCGACCATTCCAGC
CACAACTGCTTGATCTCCGTCAGCAACAGCCATGCTGACCACCGCATTGG
GATAAGTCAATGTGTGCACTGTTTTGTAGGTGCTCACATCGTAGATTTTC
ACGTGCCTATCGAGCCCGCCTGAGAGCAATCTCCTGCCATCGGATCCCAG
TCGCAGACNAGTTACTGTTTTGTGATGCTGCGACATCATGGTGAGCAGAC
GGCAGCCGC
BS10057.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3071-PA | 1608 | CG3071-RA | 716..1608 | 909..17 | 4446 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3071-RA | 1921 | CG3071-RA | 775..1667 | 909..17 | 4454 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2263679..2264571 | 909..17 | 4454 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 16:55:10 has no hits.
BS10057.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:01 Download gff for
BS10057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-PA | 716..1608 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:45 Download gff for
BS10057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-PA | 716..1608 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:28:19 Download gff for
BS10057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-RA | 775..1667 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:22:40 Download gff for
BS10057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-RA | 775..1667 | 17..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:22:40 Download gff for
BS10057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2263679..2264571 | 17..909 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:28:19 Download gff for
BS10057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2157712..2158604 | 17..909 | 99 | | Minus |
BS10057.5prime Sequence
900 bp (791 high quality bases) assembled on 2006-04-19
> BS10057.5prime
GAAGTTATCAGTCGACATGCAGAACTCCTTTCTTCCACTGAACACACGGC
GTTTTCGACAGCGGGCCCAGGTGGAAACGCCGGATACGGTGTACTGGGAC
CGACTGGCGAAACCAGAACTACTCAAGGAGCACAACACCATCGATTATTT
GGACTTCAGTCCAAGCGATCCTGACAACTTTGTTGTGACCTGTTCGGTGC
GCGTTCAGATTTACAACCTGGTGACCATGCTTGTGGTAAAGAACCTTTCC
CGATTCCAAAAGACCGCATACGGCGCCACCTTCCGGCAGGATGGTCGACT
CCTGGCCGCCGGCGACGAGGAGGGCCATGTCAAGCTATTCGACACCACCA
GTCGCAACATCTTGCGTTTGTTCAAGGGACACACGGCACCAGTACACCGC
ACCTTCTTTACGGCGGACAAGCTGCAGCTAGCCAGTTTTGGAGACGACAA
GTCGGTCCGTCTGTGGGACGTGGCAAACGAGAAGGTGGTGCAAACGTACG
AGGACACGCACACCGACTACGTTCGTGCAGGCGCCATGCATCCGCAGGCA
GGGCATATGTTCGTCTCCGGCGGCTACGATGGCAAGATCAAACTGTACGA
TACGAGAGCGGAAACGGCGGTGCAGCGCACCTTAGATCACGGAGCTCCGG
TGGAGTCCATGTTGTTCCTTCCGAACGGCTCTATTTTCGTCAGCGCCGGC
GGCAGCCAGGTGCGCGTATGGGATCTCATCAGCGGCTGCCGTCTGCTCAC
CATGATGTCGCAGCATCACAAAACAGTAACTTGTCTGCGACTGGGATCCG
ATGGCAGGAGATTGCTCTCAGGCGGGCTCGATAGGCACGTGAAAATCTAC
GATGTGAGCACCTACAAAACAGTGCACACATTGACTTATCCCCATGCGGT
BS10057.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3071-PA | 1608 | CG3071-RA | 1..884 | 17..900 | 4395 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3071-RA | 1921 | CG3071-RA | 60..943 | 17..900 | 4405 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2263056..2263847 | 109..900 | 3945 | 99.9 | Plus |
X | 23542271 | X | 2262896..2262988 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:47:37 has no hits.
BS10057.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:02 Download gff for
BS10057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:47 Download gff for
BS10057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:46 Download gff for
BS10057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-RA | 52..943 | 9..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:39 Download gff for
BS10057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-RA | 52..943 | 9..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:39 Download gff for
BS10057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2262888..2262988 | 9..109 | 96 | -> | Plus |
X | 2263057..2263847 | 110..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:46 Download gff for
BS10057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2156921..2157021 | 9..109 | 96 | -> | Plus |
arm_X | 2157090..2157880 | 110..900 | 99 | | Plus |
BS10057.complete Sequence
1640 bp (1640 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636545
> BS10057.complete
GAAGTTATCAGTCGACATGCAGAACTCCTTTCTTCCACTGAACACACGGC
GTTTTCGACAGCGGGCCCAGGTGGAAACGCCGGATACGGTGTACTGGGAC
CGACTGGCGAAACCAGAACTACTCAAGGAGCACAACACCATCGATTATTT
GGACTTCAGTCCAAGCGATCCTGACAACTTTGTTGTGACCTGTTCGGTGC
GCGTTCAGATTTACAACCTGGTGACCATGCTTGTGGTAAAGAACCTTTCC
CGATTCCAAAAGACCGCATACGGCGCCACCTTCCGGCAGGATGGTCGACT
CCTGGCCGCCGGCGACGAGGAGGGCCATGTCAAGCTATTCGACACCACCA
GTCGCAACATCTTGCGTTTGTTCAAGGGACACACGGCACCAGTACACCGC
ACCTTCTTTACGGCGGACAAGCTGCAGCTAGCCAGTTTTGGAGACGACAA
GTCGGTCCGTCTGTGGGACGTGGCAAACGAGAAGGTGGTGCAAACGTACG
AGGACACGCACACCGACTACGTTCGTGCAGGCGCCATGCATCCGCAGGCA
GGGCATATGTTCGTCTCCGGCGGCTACGATGGCAAGATCAAACTGTACGA
TACGAGAGCGGAAACGGCGGTGCAGCGCACCTTAGATCACGGAGCTCCGG
TGGAGTCCATGTTGTTCCTTCCGAACGGCTCTATTTTCGTCAGCGCCGGC
GGCAGCCAGGTGCGCGTATGGGATCTCATCAGCGGCTGCCGTCTGCTCAC
CATGATGTCGCAGCATCACAAAACAGTAACTTGTCTGCGACTGGGATCCG
ATGGCAGGAGATTGCTCTCAGGCGGGCTCGATAGGCACGTGAAAATCTAC
GATGTGAGCACCTACAAAACAGTGCACACATTGACTTATCCCAATGCGGT
GGTCAGCATGGCTGTTGCTGACGGAGATCAAGCAGTTGTGGCTGGAATGG
TCGATGGTCTAGTCTCCATTCGTCGCATGATGGTAGACAGCAAGCCCAGT
CATTTGAAAAAGATTCGTGCGGATCGCGCTCGAAAGTACTTCGTGAGTAC
GAAACGCACGAACAACACCCAAGAGGTTGATCACACCATCAAGGACCACG
TCAAGGGGCCTGGATTGAAATCCTACGATGTGCACTTGCGCCAGTTTAAC
CACAAGAAGGCTTTGGACGACGTGATGAATGCGCAGAAGATGCAATACCA
GCCGGAGCTCATTGTGGCTGTCATCACGGACCTTCTGCACCGTGGATCAC
TGGGAAAAGCCCTCACGGGTCGTCATGAGGCAGCGCTTGTCCGATTCATC
GACTTCATTTGCAACCACTTGGGCGAGGTGCGATTCATGCGCCCGCTGAT
GATGGCCGCGAGCACGGTCCTTGATGTCTTCGAGCAACGATTGGTGGCCT
ACAGCCAGAAGCTGATGAAAGCCTTGCAACGATTGTCACTTGCAATGCAG
GAGGAGGTGAGGCTCACCGCCGAGCTGATGCGGATGAAGGGTGCTGTGGA
TATGCTCATTGGGATTTCAATGGACAATAGCGAGGTAGCCCATAAGCCCA
CCTATGTGGAGACAAAGACACCTAAGATGCATCCCTCCGTGGCGGCGCAA
AATTATGTGGTCTTAGTTGAGTGAAAGCTTTCTAGACCAT
BS10057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3071-RA | 1608 | CG3071-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3071-RA | 1921 | CG3071-RA | 60..1667 | 17..1624 | 8040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2263056..2264571 | 109..1624 | 7580 | 100 | Plus |
X | 23542271 | X | 2262896..2262988 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:05 has no hits.
BS10057.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:22 Download gff for
BS10057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-RA | 1..1608 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:03 Download gff for
BS10057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-RA | 47..1662 | 9..1624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:44 Download gff for
BS10057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-RA | 60..1666 | 17..1623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:22 Download gff for
BS10057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-RA | 47..1662 | 9..1624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:22 Download gff for
BS10057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3071-RA | 60..1666 | 17..1623 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:22 Download gff for
BS10057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2262896..2262988 | 17..109 | 100 | -> | Plus |
X | 2263057..2264570 | 110..1623 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:44 Download gff for
BS10057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2156929..2157021 | 17..109 | 100 | -> | Plus |
arm_X | 2157090..2158603 | 110..1623 | 100 | | Plus |
BS10057.pep Sequence
Translation from 16 to 1623
> BS10057.pep
MQNSFLPLNTRRFRQRAQVETPDTVYWDRLAKPELLKEHNTIDYLDFSPS
DPDNFVVTCSVRVQIYNLVTMLVVKNLSRFQKTAYGATFRQDGRLLAAGD
EEGHVKLFDTTSRNILRLFKGHTAPVHRTFFTADKLQLASFGDDKSVRLW
DVANEKVVQTYEDTHTDYVRAGAMHPQAGHMFVSGGYDGKIKLYDTRAET
AVQRTLDHGAPVESMLFLPNGSIFVSAGGSQVRVWDLISGCRLLTMMSQH
HKTVTCLRLGSDGRRLLSGGLDRHVKIYDVSTYKTVHTLTYPNAVVSMAV
ADGDQAVVAGMVDGLVSIRRMMVDSKPSHLKKIRADRARKYFVSTKRTNN
TQEVDHTIKDHVKGPGLKSYDVHLRQFNHKKALDDVMNAQKMQYQPELIV
AVITDLLHRGSLGKALTGRHEAALVRFIDFICNHLGEVRFMRPLMMAAST
VLDVFEQRLVAYSQKLMKALQRLSLAMQEEVRLTAELMRMKGAVDMLIGI
SMDNSEVAHKPTYVETKTPKMHPSVAAQNYVVLVE*
BS10057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3071-PA | 535 | CG3071-PA | 1..535 | 1..535 | 2754 | 100 | Plus |
wds-PB | 361 | CG17437-PB | 68..312 | 77..318 | 238 | 25.1 | Plus |
wds-PA | 361 | CG17437-PA | 68..312 | 77..318 | 238 | 25.1 | Plus |
Rack1-PC | 318 | CG7111-PC | 11..296 | 35..314 | 229 | 26.9 | Plus |
Rack1-PD | 318 | CG7111-PD | 11..296 | 35..314 | 229 | 26.9 | Plus |
wds-PB | 361 | CG17437-PB | 105..324 | 79..289 | 197 | 26.9 | Plus |
wds-PA | 361 | CG17437-PA | 105..324 | 79..289 | 197 | 26.9 | Plus |