Clone BS10057 Report

Search the DGRC for BS10057

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG3071-RA
Protein status:BS10057.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10057.3prime Sequence

909 bp (791 high quality bases) assembled on 2006-04-19

> BS10057.3prime
ATGGTCTAGAAAGCTTTCACTCAACTAAGACCACATAATTTTGCGCCGCC
ACGGAGGGATGCATCTTAGGTGTCTTTGTCTCCACATAGGTGGGCTTATG
GGCTACCTCGCTATTGTCCATTGAAATCCCAATGAGCATATCCACAGCAC
CCTTCATCCGCATCAGCTCGGCGGTGAGCCTCACCTCCTCCTGCATTGCA
AGTGACAATCGTTGCAAGGCTTTCATCAGCTTCTGGCTGTAGGCCACCAA
TCGTTGCTCGAAGACATCAAGGACCGTGCTCGCGGCCATCATCAGCGGGC
GCATGAATCGCACCTCGCCCAAGTGGTTGCAAATGAAGTCGATGAATCGG
ACAAGCGCTGCCTCATGACGACCCGTGAGGGCTTTTCCCAGTGATCCACG
GTGCAGAAGGTCCGTGATGACAGCCACAATGAGCTCCGGCTGGTATTGCA
TCTTCTGCGCATTCATCACGTCGTCCAAAGCCTTCTTGTGGTTAAACTGG
CGCAAGTGCACATCGTAGGATTTCAATCCAGGCCCCTTGACGTGGTCCTT
GATGGTGTGATCAACCTCTTGGGTGTTGTTCGTGCGTTTCGTACTCACGA
AGTACTTTCGAGCGCGATCCGCACGAATCTTTTTCAAATGACTGGGCTTG
CTGTCTACCATCATGCGACGAATGGAGACTAGACCATCGACCATTCCAGC
CACAACTGCTTGATCTCCGTCAGCAACAGCCATGCTGACCACCGCATTGG
GATAAGTCAATGTGTGCACTGTTTTGTAGGTGCTCACATCGTAGATTTTC
ACGTGCCTATCGAGCCCGCCTGAGAGCAATCTCCTGCCATCGGATCCCAG
TCGCAGACNAGTTACTGTTTTGTGATGCTGCGACATCATGGTGAGCAGAC
GGCAGCCGC

BS10057.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3071-PA 1608 CG3071-RA 716..1608 909..17 4446 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3071-RA 1921 CG3071-RA 775..1667 909..17 4454 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2263679..2264571 909..17 4454 99.9 Minus
Blast to na_te.dros performed on 2015-02-06 16:55:10 has no hits.

BS10057.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:01 Download gff for BS10057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3071-PA 716..1608 17..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:45 Download gff for BS10057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3071-PA 716..1608 17..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:28:19 Download gff for BS10057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3071-RA 775..1667 17..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:22:40 Download gff for BS10057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3071-RA 775..1667 17..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:22:40 Download gff for BS10057.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2263679..2264571 17..909 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:28:19 Download gff for BS10057.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2157712..2158604 17..909 99   Minus

BS10057.5prime Sequence

900 bp (791 high quality bases) assembled on 2006-04-19

> BS10057.5prime
GAAGTTATCAGTCGACATGCAGAACTCCTTTCTTCCACTGAACACACGGC
GTTTTCGACAGCGGGCCCAGGTGGAAACGCCGGATACGGTGTACTGGGAC
CGACTGGCGAAACCAGAACTACTCAAGGAGCACAACACCATCGATTATTT
GGACTTCAGTCCAAGCGATCCTGACAACTTTGTTGTGACCTGTTCGGTGC
GCGTTCAGATTTACAACCTGGTGACCATGCTTGTGGTAAAGAACCTTTCC
CGATTCCAAAAGACCGCATACGGCGCCACCTTCCGGCAGGATGGTCGACT
CCTGGCCGCCGGCGACGAGGAGGGCCATGTCAAGCTATTCGACACCACCA
GTCGCAACATCTTGCGTTTGTTCAAGGGACACACGGCACCAGTACACCGC
ACCTTCTTTACGGCGGACAAGCTGCAGCTAGCCAGTTTTGGAGACGACAA
GTCGGTCCGTCTGTGGGACGTGGCAAACGAGAAGGTGGTGCAAACGTACG
AGGACACGCACACCGACTACGTTCGTGCAGGCGCCATGCATCCGCAGGCA
GGGCATATGTTCGTCTCCGGCGGCTACGATGGCAAGATCAAACTGTACGA
TACGAGAGCGGAAACGGCGGTGCAGCGCACCTTAGATCACGGAGCTCCGG
TGGAGTCCATGTTGTTCCTTCCGAACGGCTCTATTTTCGTCAGCGCCGGC
GGCAGCCAGGTGCGCGTATGGGATCTCATCAGCGGCTGCCGTCTGCTCAC
CATGATGTCGCAGCATCACAAAACAGTAACTTGTCTGCGACTGGGATCCG
ATGGCAGGAGATTGCTCTCAGGCGGGCTCGATAGGCACGTGAAAATCTAC
GATGTGAGCACCTACAAAACAGTGCACACATTGACTTATCCCCATGCGGT

BS10057.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3071-PA 1608 CG3071-RA 1..884 17..900 4395 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3071-RA 1921 CG3071-RA 60..943 17..900 4405 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2263056..2263847 109..900 3945 99.9 Plus
X 23542271 X 2262896..2262988 17..109 465 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:47:37 has no hits.

BS10057.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:02 Download gff for BS10057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3071-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:47 Download gff for BS10057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3071-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:46 Download gff for BS10057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3071-RA 52..943 9..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:39 Download gff for BS10057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3071-RA 52..943 9..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:39 Download gff for BS10057.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2262888..2262988 9..109 96 -> Plus
X 2263057..2263847 110..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:46 Download gff for BS10057.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2156921..2157021 9..109 96 -> Plus
arm_X 2157090..2157880 110..900 99   Plus

BS10057.complete Sequence

1640 bp (1640 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636545

> BS10057.complete
GAAGTTATCAGTCGACATGCAGAACTCCTTTCTTCCACTGAACACACGGC
GTTTTCGACAGCGGGCCCAGGTGGAAACGCCGGATACGGTGTACTGGGAC
CGACTGGCGAAACCAGAACTACTCAAGGAGCACAACACCATCGATTATTT
GGACTTCAGTCCAAGCGATCCTGACAACTTTGTTGTGACCTGTTCGGTGC
GCGTTCAGATTTACAACCTGGTGACCATGCTTGTGGTAAAGAACCTTTCC
CGATTCCAAAAGACCGCATACGGCGCCACCTTCCGGCAGGATGGTCGACT
CCTGGCCGCCGGCGACGAGGAGGGCCATGTCAAGCTATTCGACACCACCA
GTCGCAACATCTTGCGTTTGTTCAAGGGACACACGGCACCAGTACACCGC
ACCTTCTTTACGGCGGACAAGCTGCAGCTAGCCAGTTTTGGAGACGACAA
GTCGGTCCGTCTGTGGGACGTGGCAAACGAGAAGGTGGTGCAAACGTACG
AGGACACGCACACCGACTACGTTCGTGCAGGCGCCATGCATCCGCAGGCA
GGGCATATGTTCGTCTCCGGCGGCTACGATGGCAAGATCAAACTGTACGA
TACGAGAGCGGAAACGGCGGTGCAGCGCACCTTAGATCACGGAGCTCCGG
TGGAGTCCATGTTGTTCCTTCCGAACGGCTCTATTTTCGTCAGCGCCGGC
GGCAGCCAGGTGCGCGTATGGGATCTCATCAGCGGCTGCCGTCTGCTCAC
CATGATGTCGCAGCATCACAAAACAGTAACTTGTCTGCGACTGGGATCCG
ATGGCAGGAGATTGCTCTCAGGCGGGCTCGATAGGCACGTGAAAATCTAC
GATGTGAGCACCTACAAAACAGTGCACACATTGACTTATCCCAATGCGGT
GGTCAGCATGGCTGTTGCTGACGGAGATCAAGCAGTTGTGGCTGGAATGG
TCGATGGTCTAGTCTCCATTCGTCGCATGATGGTAGACAGCAAGCCCAGT
CATTTGAAAAAGATTCGTGCGGATCGCGCTCGAAAGTACTTCGTGAGTAC
GAAACGCACGAACAACACCCAAGAGGTTGATCACACCATCAAGGACCACG
TCAAGGGGCCTGGATTGAAATCCTACGATGTGCACTTGCGCCAGTTTAAC
CACAAGAAGGCTTTGGACGACGTGATGAATGCGCAGAAGATGCAATACCA
GCCGGAGCTCATTGTGGCTGTCATCACGGACCTTCTGCACCGTGGATCAC
TGGGAAAAGCCCTCACGGGTCGTCATGAGGCAGCGCTTGTCCGATTCATC
GACTTCATTTGCAACCACTTGGGCGAGGTGCGATTCATGCGCCCGCTGAT
GATGGCCGCGAGCACGGTCCTTGATGTCTTCGAGCAACGATTGGTGGCCT
ACAGCCAGAAGCTGATGAAAGCCTTGCAACGATTGTCACTTGCAATGCAG
GAGGAGGTGAGGCTCACCGCCGAGCTGATGCGGATGAAGGGTGCTGTGGA
TATGCTCATTGGGATTTCAATGGACAATAGCGAGGTAGCCCATAAGCCCA
CCTATGTGGAGACAAAGACACCTAAGATGCATCCCTCCGTGGCGGCGCAA
AATTATGTGGTCTTAGTTGAGTGAAAGCTTTCTAGACCAT

BS10057.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3071-RA 1608 CG3071-PA 1..1608 17..1624 8040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3071-RA 1921 CG3071-RA 60..1667 17..1624 8040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2263056..2264571 109..1624 7580 100 Plus
X 23542271 X 2262896..2262988 17..109 465 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:56:05 has no hits.

BS10057.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:22 Download gff for BS10057.complete
Subject Subject Range Query Range Percent Splice Strand
CG3071-RA 1..1608 17..1624 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:03 Download gff for BS10057.complete
Subject Subject Range Query Range Percent Splice Strand
CG3071-RA 47..1662 9..1624 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:44 Download gff for BS10057.complete
Subject Subject Range Query Range Percent Splice Strand
CG3071-RA 60..1666 17..1623 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:22 Download gff for BS10057.complete
Subject Subject Range Query Range Percent Splice Strand
CG3071-RA 47..1662 9..1624 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:22 Download gff for BS10057.complete
Subject Subject Range Query Range Percent Splice Strand
CG3071-RA 60..1666 17..1623 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:22 Download gff for BS10057.complete
Subject Subject Range Query Range Percent Splice Strand
X 2262896..2262988 17..109 100 -> Plus
X 2263057..2264570 110..1623 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:44 Download gff for BS10057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2156929..2157021 17..109 100 -> Plus
arm_X 2157090..2158603 110..1623 100   Plus

BS10057.pep Sequence

Translation from 16 to 1623

> BS10057.pep
MQNSFLPLNTRRFRQRAQVETPDTVYWDRLAKPELLKEHNTIDYLDFSPS
DPDNFVVTCSVRVQIYNLVTMLVVKNLSRFQKTAYGATFRQDGRLLAAGD
EEGHVKLFDTTSRNILRLFKGHTAPVHRTFFTADKLQLASFGDDKSVRLW
DVANEKVVQTYEDTHTDYVRAGAMHPQAGHMFVSGGYDGKIKLYDTRAET
AVQRTLDHGAPVESMLFLPNGSIFVSAGGSQVRVWDLISGCRLLTMMSQH
HKTVTCLRLGSDGRRLLSGGLDRHVKIYDVSTYKTVHTLTYPNAVVSMAV
ADGDQAVVAGMVDGLVSIRRMMVDSKPSHLKKIRADRARKYFVSTKRTNN
TQEVDHTIKDHVKGPGLKSYDVHLRQFNHKKALDDVMNAQKMQYQPELIV
AVITDLLHRGSLGKALTGRHEAALVRFIDFICNHLGEVRFMRPLMMAAST
VLDVFEQRLVAYSQKLMKALQRLSLAMQEEVRLTAELMRMKGAVDMLIGI
SMDNSEVAHKPTYVETKTPKMHPSVAAQNYVVLVE*

BS10057.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3071-PA 535 CG3071-PA 1..535 1..535 2754 100 Plus
wds-PB 361 CG17437-PB 68..312 77..318 238 25.1 Plus
wds-PA 361 CG17437-PA 68..312 77..318 238 25.1 Plus
Rack1-PC 318 CG7111-PC 11..296 35..314 229 26.9 Plus
Rack1-PD 318 CG7111-PD 11..296 35..314 229 26.9 Plus
wds-PB 361 CG17437-PB 105..324 79..289 197 26.9 Plus
wds-PA 361 CG17437-PA 105..324 79..289 197 26.9 Plus