Clone Sequence Records
BS10061.3prime Sequence
886 bp (844 high quality bases) assembled on 2006-04-19
> BS10061.3prime
ATGGTCTAGAAAGCTTTCACTGACACAGAGGTTTTCTAGCCAGCGGCGAG
AAGCGATTCTTTTGGAAATGGCTATTGATGGGTACTTCCTCGACTTCGGA
CTCGCTCTCCGTCTCCATGGGTTCGCCTGCGTCATTCGGCTGATCGTAGA
ATTCATTTAGTTGTGGATATAGAGTGTTTACTGCGGTGGTCGGCTGGAGC
AGGCGACCACGGGCCAGATTGGATCCACTAACTGGAACACTCTGTCGCTG
GCGAATGGGTGCTGGAGCTGGTGCTGGGCCACCAAAAGGCCTAGCGGATC
CGCTGAAAGTGTTTCTTGGCGAAATGGGTGAAAGTTTTGGATTGTACGTA
GATGACTCCTCGTAGCTGGTTGAGTTTAAGTTGGTTTGAGTCAGCAGGGG
ACGCGAAAAACCCAAATCTGTGGGTCTGTATGTCGAAGGTTCGATGCGTG
GCTCGTATGTGGGAAGTGCGTGAAGAGTGGCGGCTGGCACATGGGGTCTT
TCGTAGGTGTAGCTGCGTGGTATATCCTCCTGTTCGTACAGCGGCTGGTC
AACTTCGCGTGTGTAAGATGTGGTCAAAACTCCGGATTTGGCTAGAGAAA
CATAACGTCTAGGCTGCTGGTCCTTGGAGTAATTAGGCACCGGAGAGTCC
ACCATGTAGGAGTCGTCGTCCTCCGACTGGGAGCTCATATCCGACACCGT
GGTAGTAGTCTGCACAGATCTTCCCGAGATCGAGGTGTTGTCTAGTCCAT
AGGCGATTGTGCGACGACTTTGTTCGCTGATCTTGTTGTTGTTGCTGCTA
GTGCGTCCTGCACTCTTGCCGGGCGTACGACGCACTGGCTCCGATGTGGG
CGTCGTTACCTGGCTGCCGTGTACGGTCTCACGCCC
BS10061.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9424-PA | 1056 | bocksbeutel-RA | 188..1056 | 885..17 | 4345 | 100 | Minus |
CG9424-PB | 1200 | bocksbeutel-RB | 188..1047 | 885..26 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bocksbeutel-RA | 1435 | CG9424-RA | 261..1129 | 885..17 | 4345 | 100 | Minus |
bocksbeutel-RB | 1535 | CG9424-RB | 261..1120 | 885..26 | 4300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9589883..9590742 | 26..885 | 4300 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 13:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1129..1166 | 811..773 | 111 | 79.5 | Minus |
BS10061.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:08 Download gff for
BS10061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9424-PA | 186..1056 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:56 Download gff for
BS10061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9424-PA | 186..1056 | 17..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:57:47 Download gff for
BS10061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bocksbeutel-RA | 259..1133 | 12..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:35:54 Download gff for
BS10061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bocksbeutel-RA | 259..1133 | 12..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:35:54 Download gff for
BS10061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9589878..9590742 | 20..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:57:47 Download gff for
BS10061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5415600..5416464 | 20..886 | 99 | | Plus |
BS10061.5prime Sequence
946 bp (825 high quality bases) assembled on 2006-04-19
> BS10061.5prime
GAAGTTATCAGTCGACATGTCGGACCTTTCTTACCTGGACACGTTGGGCA
ACAAGGAGCTGCTGGCCAAGTGCCTGGAGCACGGCCTGCCCGGTGTTCCC
GTGACGGACAGCACCCGCAGCGTCATAATTCGCCGACTAAAGGCCAAAAT
CACCGGGGTTCCGCTGAACAAAAGCAAATCTGCAAGTAAGAAAGCGATTC
CGAGGCGTGAGACCGTACACGGCAGCCAGGTAACGACGCCCACATCGGAG
CCAGTGCGTCGTACGCCCGGCAAGAGTGCAGGACGCACTAGCAGCAACAA
CAACAAGATCAGCGAACAAAGTCGTCGCACAATCGCCTATGGACTAGACA
ACACCTCGATCTCGGGAAGATCTGTGCAGACTACTACCACGGTGTCGGAT
ATGAGCTCCCAGTCGGAGGACGACGACTCCTACATGGTGGACTCTCCGGT
GCCTAATTACTCCAAGGACCAGCAGCCTAGACGTTATGTTTCTCTAGCCA
AATCCGGAGTTTTGACCACATCTTACACACGCGAAGTTGACCAGCCGCTG
TACGAACAGGAGGATATACCACGCAGCTACACCTACGAAAGACCCCATGT
GCCAGCCGCCACTCTTCACGCACTTCCCACATACGAGCCACGCATCGAAC
CTTCGACATACAGACCCACAGATTTGGGTTTTTCGCGTCCCCTGCTGACT
CAAACCAACTTAAACTCAACCAGCTACGAGGAGTCATCTACGTACAATCC
AAAACTTTCACCCATTTCGCCAAGAAACACTTTCAGCGGATCCGCTAGGC
CTTTTGGTGGCCCAGCACCAGCTCCAGCACCCATTCGCCAGCGACAGAGT
GTTCCAGTTAGTGGATCCAATCTGGCCCGTGGTCGCCTGCTCCAGCCGAC
CACCGCATTAAACACTCTATATCCACAACTAAATGAATTCTACGAT
BS10061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9424-PA | 1056 | bocksbeutel-RA | 1..930 | 17..946 | 4625 | 99.8 | Plus |
CG9424-PB | 1200 | bocksbeutel-RB | 1..930 | 17..946 | 4625 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bocksbeutel-RB | 1535 | CG9424-RB | 74..1003 | 17..946 | 4635 | 99.9 | Plus |
bocksbeutel-RA | 1435 | CG9424-RA | 74..1003 | 17..946 | 4635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9590000..9590929 | 946..17 | 4635 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-11 14:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1129..1166 | 278..316 | 111 | 79.5 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3184..3368 | 162..355 | 109 | 58.1 | Plus |
BS10061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:09 Download gff for
BS10061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9424-PA | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:58 Download gff for
BS10061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9424-PB | 1..930 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:44:34 Download gff for
BS10061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bocksbeutel-RA | 74..1003 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:14 Download gff for
BS10061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bocksbeutel-RA | 74..1003 | 17..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:14 Download gff for
BS10061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9590000..9590929 | 17..946 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:44:34 Download gff for
BS10061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5415722..5416651 | 17..946 | 99 | | Minus |
BS10061.complete Sequence
1088 bp (1088 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636547
> BS10061.complete
GAAGTTATCAGTCGACATGTCGGACCTTTCTTACCTGGACACGTTGGGCA
ACAAGGAGCTGCTGGCCAAGTGCCTGGAGCACGGCCTGCCCGGTGTTCCC
GTGACGGACAGCACCCGCAGCGTCATAATTCGCCGACTAAAGGCCAAAAT
CACCGGGGTTCCGCTGAACAAAAGCAAATCTGCAAGTAAGAAAGCGATTC
CGAGGCGTGAGACCGTACACGGCAGCCAGGTAACGACGCCCACATCGGAG
CCAGTGCGTCGTACGCCCGGCAAGAGTGCAGGACGCACTAGCAGCAACAA
CAACAAGATCAGCGAACAAAGTCGTCGCACAATCGCCTATGGACTAGACA
ACACCTCGATCTCGGGAAGATCTGTGCAGACTACTACCACGGTGTCGGAT
ATGAGCTCCCAGTCGGAGGACGACGACTCCTACATGGTGGACTCTCCGGT
GCCTAATTACTCCAAGGACCAGCAGCCTAGACGTTATGTTTCTCTAGCCA
AATCCGGAGTTTTGACCACATCTTACACACGCGAAGTTGACCAGCCGCTG
TACGAACAGGAGGATATACCACGCAGCTACACCTACGAAAGACCCCATGT
GCCAGCCGCCACTCTTCACGCACTTCCCACATACGAGCCACGCATCGAAC
CTTCGACATACAGACCCACAGATTTGGGTTTTTCGCGTCCCCTGCTGACT
CAAACCAACTTAAACTCAACCAGCTACGAGGAGTCATCTACGTACAATCC
AAAACTTTCACCCATTTCGCCAAGAAACACTTTCAGCGGATCCGCTAGGC
CTTTTGGTGGCCCAGCACCAGCTCCAGCACCCATTCGCCAGCGACAGAGT
GTTCCAGTTAGTGGATCCAATCTGGCCCGTGGTCGCCTGCTCCAGCCGAC
CACCGCAGTAAACACTCTATATCCACAACTAAATGAATTCTACGATCAGC
CGAATGACGCAGGCGAACCCATGGAGACGGAGAGCGAGTCCGAAGTCGAG
GAAGTACCCATCAATAGCCATTTCCAAAAGAATCGCTTCTCGCCGCTGGC
TAGAAAACCTCTGTGTCAGTGAAAGCTTTCTAGACCAT
BS10061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bocksbeutel-RA | 1056 | CG9424-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
bocksbeutel-RB | 1200 | CG9424-PB | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bocksbeutel-RA | 1435 | CG9424-RA | 74..1129 | 17..1072 | 5280 | 100 | Plus |
bocksbeutel-RB | 1535 | CG9424-RB | 74..1120 | 17..1063 | 5235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9589883..9590929 | 1063..17 | 5235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1129..1166 | 278..316 | 111 | 79.5 | Plus |
BS10061.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:42 Download gff for
BS10061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bocksbeutel-RA | 1..1056 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:20 Download gff for
BS10061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bocksbeutel-RA | 59..1118 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:45 Download gff for
BS10061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bocksbeutel-RA | 74..1128 | 17..1071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:42 Download gff for
BS10061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bocksbeutel-RA | 59..1118 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:37 Download gff for
BS10061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bocksbeutel-RA | 74..1128 | 17..1071 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:37 Download gff for
BS10061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9589876..9590929 | 17..1071 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:45 Download gff for
BS10061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5415598..5416651 | 17..1071 | 99 | | Minus |
BS10061.pep Sequence
Translation from 16 to 1071
> BS10061.pep
MSDLSYLDTLGNKELLAKCLEHGLPGVPVTDSTRSVIIRRLKAKITGVPL
NKSKSASKKAIPRRETVHGSQVTTPTSEPVRRTPGKSAGRTSSNNNKISE
QSRRTIAYGLDNTSISGRSVQTTTTVSDMSSQSEDDDSYMVDSPVPNYSK
DQQPRRYVSLAKSGVLTTSYTREVDQPLYEQEDIPRSYTYERPHVPAATL
HALPTYEPRIEPSTYRPTDLGFSRPLLTQTNLNSTSYEESSTYNPKLSPI
SPRNTFSGSARPFGGPAPAPAPIRQRQSVPVSGSNLARGRLLQPTTAVNT
LYPQLNEFYDQPNDAGEPMETESESEVEEVPINSHFQKNRFSPLARKPLC
Q*
BS10061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bocksbeutel-PA | 351 | CG9424-PA | 1..351 | 1..351 | 1811 | 100 | Plus |
bocksbeutel-PB | 399 | CG9424-PB | 1..349 | 1..349 | 1797 | 100 | Plus |
Ote-PA | 424 | CG5581-PA | 1..283 | 1..249 | 173 | 25.1 | Plus |