Clone BS10061 Report

Search the DGRC for BS10061

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:61
Vector:pDNR-Dual
Associated Gene/Transcriptbocksbeutel-RA
Protein status:BS10061.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10061.3prime Sequence

886 bp (844 high quality bases) assembled on 2006-04-19

> BS10061.3prime
ATGGTCTAGAAAGCTTTCACTGACACAGAGGTTTTCTAGCCAGCGGCGAG
AAGCGATTCTTTTGGAAATGGCTATTGATGGGTACTTCCTCGACTTCGGA
CTCGCTCTCCGTCTCCATGGGTTCGCCTGCGTCATTCGGCTGATCGTAGA
ATTCATTTAGTTGTGGATATAGAGTGTTTACTGCGGTGGTCGGCTGGAGC
AGGCGACCACGGGCCAGATTGGATCCACTAACTGGAACACTCTGTCGCTG
GCGAATGGGTGCTGGAGCTGGTGCTGGGCCACCAAAAGGCCTAGCGGATC
CGCTGAAAGTGTTTCTTGGCGAAATGGGTGAAAGTTTTGGATTGTACGTA
GATGACTCCTCGTAGCTGGTTGAGTTTAAGTTGGTTTGAGTCAGCAGGGG
ACGCGAAAAACCCAAATCTGTGGGTCTGTATGTCGAAGGTTCGATGCGTG
GCTCGTATGTGGGAAGTGCGTGAAGAGTGGCGGCTGGCACATGGGGTCTT
TCGTAGGTGTAGCTGCGTGGTATATCCTCCTGTTCGTACAGCGGCTGGTC
AACTTCGCGTGTGTAAGATGTGGTCAAAACTCCGGATTTGGCTAGAGAAA
CATAACGTCTAGGCTGCTGGTCCTTGGAGTAATTAGGCACCGGAGAGTCC
ACCATGTAGGAGTCGTCGTCCTCCGACTGGGAGCTCATATCCGACACCGT
GGTAGTAGTCTGCACAGATCTTCCCGAGATCGAGGTGTTGTCTAGTCCAT
AGGCGATTGTGCGACGACTTTGTTCGCTGATCTTGTTGTTGTTGCTGCTA
GTGCGTCCTGCACTCTTGCCGGGCGTACGACGCACTGGCTCCGATGTGGG
CGTCGTTACCTGGCTGCCGTGTACGGTCTCACGCCC

BS10061.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9424-PA 1056 bocksbeutel-RA 188..1056 885..17 4345 100 Minus
CG9424-PB 1200 bocksbeutel-RB 188..1047 885..26 4300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
bocksbeutel-RA 1435 CG9424-RA 261..1129 885..17 4345 100 Minus
bocksbeutel-RB 1535 CG9424-RB 261..1120 885..26 4300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9589883..9590742 26..885 4300 100 Plus
Blast to na_te.dros performed 2015-02-12 13:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1129..1166 811..773 111 79.5 Minus

BS10061.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:08 Download gff for BS10061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9424-PA 186..1056 17..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:56 Download gff for BS10061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9424-PA 186..1056 17..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:57:47 Download gff for BS10061.3prime
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 259..1133 12..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:35:54 Download gff for BS10061.3prime
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 259..1133 12..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:35:54 Download gff for BS10061.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9589878..9590742 20..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:57:47 Download gff for BS10061.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5415600..5416464 20..886 99   Plus

BS10061.5prime Sequence

946 bp (825 high quality bases) assembled on 2006-04-19

> BS10061.5prime
GAAGTTATCAGTCGACATGTCGGACCTTTCTTACCTGGACACGTTGGGCA
ACAAGGAGCTGCTGGCCAAGTGCCTGGAGCACGGCCTGCCCGGTGTTCCC
GTGACGGACAGCACCCGCAGCGTCATAATTCGCCGACTAAAGGCCAAAAT
CACCGGGGTTCCGCTGAACAAAAGCAAATCTGCAAGTAAGAAAGCGATTC
CGAGGCGTGAGACCGTACACGGCAGCCAGGTAACGACGCCCACATCGGAG
CCAGTGCGTCGTACGCCCGGCAAGAGTGCAGGACGCACTAGCAGCAACAA
CAACAAGATCAGCGAACAAAGTCGTCGCACAATCGCCTATGGACTAGACA
ACACCTCGATCTCGGGAAGATCTGTGCAGACTACTACCACGGTGTCGGAT
ATGAGCTCCCAGTCGGAGGACGACGACTCCTACATGGTGGACTCTCCGGT
GCCTAATTACTCCAAGGACCAGCAGCCTAGACGTTATGTTTCTCTAGCCA
AATCCGGAGTTTTGACCACATCTTACACACGCGAAGTTGACCAGCCGCTG
TACGAACAGGAGGATATACCACGCAGCTACACCTACGAAAGACCCCATGT
GCCAGCCGCCACTCTTCACGCACTTCCCACATACGAGCCACGCATCGAAC
CTTCGACATACAGACCCACAGATTTGGGTTTTTCGCGTCCCCTGCTGACT
CAAACCAACTTAAACTCAACCAGCTACGAGGAGTCATCTACGTACAATCC
AAAACTTTCACCCATTTCGCCAAGAAACACTTTCAGCGGATCCGCTAGGC
CTTTTGGTGGCCCAGCACCAGCTCCAGCACCCATTCGCCAGCGACAGAGT
GTTCCAGTTAGTGGATCCAATCTGGCCCGTGGTCGCCTGCTCCAGCCGAC
CACCGCATTAAACACTCTATATCCACAACTAAATGAATTCTACGAT

BS10061.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9424-PA 1056 bocksbeutel-RA 1..930 17..946 4625 99.8 Plus
CG9424-PB 1200 bocksbeutel-RB 1..930 17..946 4625 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
bocksbeutel-RB 1535 CG9424-RB 74..1003 17..946 4635 99.9 Plus
bocksbeutel-RA 1435 CG9424-RA 74..1003 17..946 4635 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9590000..9590929 946..17 4635 99.9 Minus
Blast to na_te.dros performed 2015-02-11 14:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1129..1166 278..316 111 79.5 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3184..3368 162..355 109 58.1 Plus

BS10061.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:09 Download gff for BS10061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9424-PA 1..930 17..946 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:44:58 Download gff for BS10061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9424-PB 1..930 17..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:44:34 Download gff for BS10061.5prime
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 74..1003 17..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:14 Download gff for BS10061.5prime
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 74..1003 17..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:14 Download gff for BS10061.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9590000..9590929 17..946 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:44:34 Download gff for BS10061.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5415722..5416651 17..946 99   Minus

BS10061.complete Sequence

1088 bp (1088 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636547

> BS10061.complete
GAAGTTATCAGTCGACATGTCGGACCTTTCTTACCTGGACACGTTGGGCA
ACAAGGAGCTGCTGGCCAAGTGCCTGGAGCACGGCCTGCCCGGTGTTCCC
GTGACGGACAGCACCCGCAGCGTCATAATTCGCCGACTAAAGGCCAAAAT
CACCGGGGTTCCGCTGAACAAAAGCAAATCTGCAAGTAAGAAAGCGATTC
CGAGGCGTGAGACCGTACACGGCAGCCAGGTAACGACGCCCACATCGGAG
CCAGTGCGTCGTACGCCCGGCAAGAGTGCAGGACGCACTAGCAGCAACAA
CAACAAGATCAGCGAACAAAGTCGTCGCACAATCGCCTATGGACTAGACA
ACACCTCGATCTCGGGAAGATCTGTGCAGACTACTACCACGGTGTCGGAT
ATGAGCTCCCAGTCGGAGGACGACGACTCCTACATGGTGGACTCTCCGGT
GCCTAATTACTCCAAGGACCAGCAGCCTAGACGTTATGTTTCTCTAGCCA
AATCCGGAGTTTTGACCACATCTTACACACGCGAAGTTGACCAGCCGCTG
TACGAACAGGAGGATATACCACGCAGCTACACCTACGAAAGACCCCATGT
GCCAGCCGCCACTCTTCACGCACTTCCCACATACGAGCCACGCATCGAAC
CTTCGACATACAGACCCACAGATTTGGGTTTTTCGCGTCCCCTGCTGACT
CAAACCAACTTAAACTCAACCAGCTACGAGGAGTCATCTACGTACAATCC
AAAACTTTCACCCATTTCGCCAAGAAACACTTTCAGCGGATCCGCTAGGC
CTTTTGGTGGCCCAGCACCAGCTCCAGCACCCATTCGCCAGCGACAGAGT
GTTCCAGTTAGTGGATCCAATCTGGCCCGTGGTCGCCTGCTCCAGCCGAC
CACCGCAGTAAACACTCTATATCCACAACTAAATGAATTCTACGATCAGC
CGAATGACGCAGGCGAACCCATGGAGACGGAGAGCGAGTCCGAAGTCGAG
GAAGTACCCATCAATAGCCATTTCCAAAAGAATCGCTTCTCGCCGCTGGC
TAGAAAACCTCTGTGTCAGTGAAAGCTTTCTAGACCAT

BS10061.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
bocksbeutel-RA 1056 CG9424-PA 1..1056 17..1072 5280 100 Plus
bocksbeutel-RB 1200 CG9424-PB 1..1047 17..1063 5235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
bocksbeutel-RA 1435 CG9424-RA 74..1129 17..1072 5280 100 Plus
bocksbeutel-RB 1535 CG9424-RB 74..1120 17..1063 5235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9589883..9590929 1063..17 5235 100 Minus
Blast to na_te.dros performed 2014-11-26 21:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1129..1166 278..316 111 79.5 Plus

BS10061.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:42 Download gff for BS10061.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 1..1056 17..1072 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:20 Download gff for BS10061.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 59..1118 17..1077 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:45 Download gff for BS10061.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 74..1128 17..1071 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:42 Download gff for BS10061.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 59..1118 17..1077 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:37 Download gff for BS10061.complete
Subject Subject Range Query Range Percent Splice Strand
bocksbeutel-RA 74..1128 17..1071 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:37 Download gff for BS10061.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9589876..9590929 17..1071 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:45 Download gff for BS10061.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5415598..5416651 17..1071 99   Minus

BS10061.pep Sequence

Translation from 16 to 1071

> BS10061.pep
MSDLSYLDTLGNKELLAKCLEHGLPGVPVTDSTRSVIIRRLKAKITGVPL
NKSKSASKKAIPRRETVHGSQVTTPTSEPVRRTPGKSAGRTSSNNNKISE
QSRRTIAYGLDNTSISGRSVQTTTTVSDMSSQSEDDDSYMVDSPVPNYSK
DQQPRRYVSLAKSGVLTTSYTREVDQPLYEQEDIPRSYTYERPHVPAATL
HALPTYEPRIEPSTYRPTDLGFSRPLLTQTNLNSTSYEESSTYNPKLSPI
SPRNTFSGSARPFGGPAPAPAPIRQRQSVPVSGSNLARGRLLQPTTAVNT
LYPQLNEFYDQPNDAGEPMETESESEVEEVPINSHFQKNRFSPLARKPLC
Q*

BS10061.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
bocksbeutel-PA 351 CG9424-PA 1..351 1..351 1811 100 Plus
bocksbeutel-PB 399 CG9424-PB 1..349 1..349 1797 100 Plus
Ote-PA 424 CG5581-PA 1..283 1..249 173 25.1 Plus