Clone Sequence Records
BS10065.3prime Sequence
890 bp (836 high quality bases) assembled on 2006-04-19
> BS10065.3prime
ATGGTCTAGAAAGCTTCTAGGACTTTCCCAGGAATTGTTCGATGGGCGCC
AGCACCACCAACAGGATCAGCACCGTCACGAAGAGAATCAGCACCACGCC
GTAAACTCCGAGCAATCCCTTGCGCATGCCCGCATACGGGGCATCCATCT
TCCGCTCCATGCTCATGCCATTCCGCATGGCGTGCTGCTGATGATGGGAC
ATGTCGCCCATTTGGAAAGTGTTCGCCCGCTGGCTGAGATGACGCTCCGA
GGCCATGCCGCCAATGGAGAATATCAGGTGGACGAGTACATGCACCACCA
CGAAGCTGACCAGGATCCAGTCCATCCACTCGGGCAGCTCGGCCTTTGGT
AGTTTTACAGAAAAGAAGATGGTAACAATTCCCAGAATATGGGCCAGGTT
ACCGCCCAGCCAATGACCCCAGTTGAAGTATGGCCGCTTCTTGTCATTGG
GTCCCGGTCGGAACAGAGCTCCAATGGGTTGAATGAAGCACAATATCACC
GTGATCAGACCGATTATCGAATGGGCATGCCACACAGCCTGCTTCAGCTC
CACCCAGATGAGTACGTAAGCGGCCACCGTAAGCGACCAGGTGGTGACCA
TGAGGAGGCGATGCCAGGCGAACCATTGATCCGTGCCGCAGCTCTGGCTG
CCCACCCACGTCTGCTTGAAGTAGCGCGCAAAGATGATGCCCAGCGAGGT
GGTTCCAATCCATGCGGCAATCATGAAGGCACCGTGGAGCTGGATGAGCA
GTCTGCTAGAACCACTCAGGTCTTGCACCTCCGCCAGATTGATCGGTTGC
GCCGAGGGCAGGCGTCCAATGTCGTGGTAGCCCACGCTGGTCTCCTTAAG
GCTGCTGCCGGATGCCACCAGCAGATGGTACTTGCCATTG
BS10065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8399-PA | 1944 | CG8399-RA | 1071..1944 | 890..17 | 4345 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8399-RA | 2315 | CG8399-RA | 1207..2080 | 890..17 | 4355 | 99.9 | Minus |
| CG8399-RB | 2342 | CG8399-RB | 1207..2107 | 890..17 | 4040 | 96.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16023176..16023687 | 890..379 | 2545 | 99.8 | Minus |
| 2R | 25286936 | 2R | 16024086..16024214 | 265..137 | 645 | 100 | Minus |
| 2R | 25286936 | 2R | 16024272..16024392 | 137..17 | 605 | 100 | Minus |
| 2R | 25286936 | 2R | 16023747..16023859 | 378..266 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:07:44 has no hits.
BS10065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:17 Download gff for
BS10065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-PA | 1071..1944 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:08 Download gff for
BS10065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-PA | 1071..1944 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:43:12 Download gff for
BS10065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 1207..2082 | 13..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:18:25 Download gff for
BS10065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 1207..2082 | 13..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:18:25 Download gff for
BS10065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16023176..16023687 | 379..890 | 99 | -> | Minus |
| 2R | 16023747..16023859 | 266..378 | 100 | -> | Minus |
| 2R | 16024086..16024214 | 137..265 | 100 | -> | Minus |
| 2R | 16024273..16024394 | 13..136 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:43:12 Download gff for
BS10065.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11910681..11911192 | 379..890 | 99 | -> | Minus |
| arm_2R | 11911252..11911364 | 266..378 | 100 | -> | Minus |
| arm_2R | 11911591..11911719 | 137..265 | 100 | -> | Minus |
| arm_2R | 11911778..11911899 | 13..136 | 98 | | Minus |
BS10065.5prime Sequence
890 bp (844 high quality bases) assembled on 2006-04-19
> BS10065.5prime
GAAGTTATCAGTCGACATGATGCAGGCGCTGACGATGCGGAGTTGGCTGG
CAACGCTGGTGACGGCGCTGCTGGCGGTGGCCATCTGGCCGGATCCGGGA
CAGAGTCTGCCGCAAGGTGCTCCGGAAACCGTGTGCGACACCATGCTGCC
GTTCCACTCCGGCGGCAGTGTGCTACCCCAGAACAGTGTGTCGCCCTTCA
GCGTGGAGACCTCTTCCTCGACACTTGGCCAGGGTCAGACGCTTCGCGTG
GATCTGACGGGTGTGCCGGCGGGCTTAAGCTTCGGTGGCTACATGATCCA
GGCGCGCAATCGGAATCCACCCCATCAGATCATCGGACAATTTGGACCCG
CCCGCGATGGCACCATTAAGCTAATGAACTGCGAGAACTCCGTGAATAAT
TCAGCCACGCATAGCAATGCAGGACCCAAGCAGCAGGTTATCCTGGAGTG
GCAATCACCAGTGGACTTTCTCGGCCAGGTGGTCTTCAATGCCACCATTG
CCCAGAGCTACAATGAATTCTGGGTGGGCGTGCCATCTCAGCCCGTTCAG
ATAGTCCGTCGCGATCTGTCCGCTGCTCCACCACTACCCACACAGAGTCC
ATCTGCCCCTGCGGGCACCACCCGTGCTCCCTATGTGCCGCCCAGCTATG
TGGCGCCAAACAACGTGGTTGCCGTTTCCTCGGATCCCATCTACAATGGC
TGCGGACAGAGCAAGAACTGTTTTGGATTCCCCGACGGTTGCGTGGCGAC
GAAGAGCTGTACCTCCATCACTGTGGTCACGGTGCGTGGAGATGTCTTCG
AGTTTGAGATTCAGTCCCGGCAGGGAACCAATGCTGCTTACGTGGCAGTT
GGTCTTTCTGATGACGCCAAGATGGGTGACGACTTGACCA
BS10065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:40:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8399-PA | 1944 | CG8399-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
| CG8399-PA | 1944 | CG8399-RA | 806..874 | 822..890 | 345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8399-RB | 2342 | CG8399-RB | 137..1010 | 17..890 | 4325 | 99.8 | Plus |
| CG8399-RA | 2315 | CG8399-RA | 137..1010 | 17..890 | 4325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16021904..16022376 | 17..489 | 2365 | 100 | Plus |
| 2R | 25286936 | 2R | 16022444..16022771 | 490..817 | 1640 | 100 | Plus |
| 2R | 25286936 | 2R | 16022837..16022903 | 824..890 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:46:34 has no hits.
BS10065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:18 Download gff for
BS10065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:10 Download gff for
BS10065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:59 Download gff for
BS10065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 131..1009 | 8..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:31 Download gff for
BS10065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 131..1009 | 8..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:31 Download gff for
BS10065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16021898..16022376 | 8..489 | 99 | -> | Plus |
| 2R | 16022444..16022778 | 490..824 | 99 | -> | Plus |
| 2R | 16022838..16022902 | 825..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:59 Download gff for
BS10065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11909403..11909881 | 8..489 | 99 | -> | Plus |
| arm_2R | 11909949..11910283 | 490..824 | 99 | -> | Plus |
| arm_2R | 11910343..11910407 | 825..889 | 100 | | Plus |
BS10065.complete Sequence
1976 bp assembled on 2007-11-30
GenBank Submission: FJ636548
> BS10065.complete
GAAGTTATCAGTCGACATGATGCAGGCGCTGACGATGCGGAGTTGGCTGG
CAACGCTGGTGACGGCGCTGCTGGCGGTGGCCATCTGGCCGGATCCGGGA
CAGAGTCTGCCGCAAGGTGCTCCGGAAACCGTGTGCGACACCATGCTGCC
GTTCCACTCCGGCGGCAGTGTGCTACCCCAGAACAGTGTGTCGCCCTTCA
GCGTGGAGACCTCTTCCTCGACACTTGGCCAGGGTCAGACGCTTCGCGTG
GATCTGACGGGTGTGCCGGCGGGCTTAAGCTTCGGTGGCTACATGATCCA
GGCGCGCAATCGGAATCCACCCCATCAGATCATCGGACAATTTGGACCCG
CCCGCGATGGCACCATTAAGCTAATGAACTGCGAGAACTCCGTGAATAAT
TCAGCCACGCATAGCAATGCAGGACCCAAGCAGCAGGTTATCCTGGAGTG
GCAATCACCAGTGGACTTTCTCGGCCAGGTGGTCTTCAATGCCACCATTG
CCCAGAGCTACAATGAATTCTGGGTGGGCGTGCCATCTCAGCCCGTTCAG
ATAGTCCGTCGCGATCTGTCCGCTGCTCCACCACTACCCACACAGAGTCC
ATCTGCCCCTGCGGGCACCACCCGTGCTCCCTATGTGCCGCCCAGCTATG
TGGCGCCAAACAACGTGGTTGCCGTTTCCTCGGATCCCATCTACAATGGC
TGCGGACAGAGCAAGAACTGTTTTGGATTCCCCGACGGTTGCGTGGCGAC
GAAGAGCTGTACCTCCATCACTGTGGTCACGGTGCGTGGAGATGTCTTCG
AGTTTGAGATTCAGTCCGGCAAGGGAACCAATGCTGCTTACGTGGCAGTT
GGTCTTTCTGATGACGCCAAGATGGGTGACGACTTGACCACCGAATGTGT
GCCAGAGAATGGCCGGGTTAACCTGTATTCCTCCTTGACTTCGGCCTCTC
CTTACTCGGCAGTGAGATCCAATGTGAACCAGAACTCTGCCCGCCTGCTG
GACGCCTCCATTGTGGATGGAGTGATCTACTGCCGTGTGCAAAGGGATGC
AGTGACCAATGTGCAGGGACGCACTTTTGATCTTCGCAATGGCAAGTACC
ATCTGCTGGTGGCATCCGGCAGCAGCCTTAAGGAGAACAGCGTGGGCTAC
CACGACATTGGACGCCTGCCCTCGGCGCAACCGATCAATCTGGCGGAGGT
GCAAGACCTGAGTGGTTCTAGCAGACTGCTCATCCAGCTCCACGGTGCCT
TCATGATTGCCGCATGGATTGGAACCACCTCGCTGGGCATCATCTTTGCG
CGCTACTTCAAGCAGACGTGGGTGGGCAGCCAGAGCTGCGGCACGGATCA
ATGGTTCGCCTGGCATCGCCTCCTCATGGTCACCACCTGGTCGCTTACGG
TGGCCGCTTACGTACTCATCTGGGTGGAGCTGAAGCAGGCTGTGTGGCAT
GCCCATTCGATAATCGGTCTGATCACGGTGATATTGTGCTTCATTCAACC
CATTGGAGCTCTGTTCCGACCGGGACCCAATGACAAGAAGCGGCCATACT
TCAACTGGGGTCATTGGCTGGGCGGTAACCTGGCCCATATTCTGGGAATT
GTTACCATCTTCTTTTCTGTAAAACTACCAAAGGCCGAGCTGCCCGAGTG
GATGGACTGGATCCTGGTCAGCTTCGTGGTGGTGCATGTACTCGTCCACC
TGATATTCTCCATTGGCGGCATGGCCTCGGAGCGTCATCTCAGCCAGCGG
GCGAACACTTTCCAAATGGGCGACATGTCCCATCATCAGCAGCACGCCAT
GCGGAATGGCATGAGCATGGAGCGGAAGATGGATGCCCCGTATGCGGGCA
TGCGCAAGGGATTGCTCGGAGTTTACGGCGTGGTGCTGATTCTCTTCGTG
ACGGTGCTGATCCTGTTGGTGGTGCTGGCGCCCATCGAACAATTCCTGGG
AAAGTCCTAGAAGCTTTCTAGACCAT
BS10065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8399-RA | 1944 | CG8399-PA | 1..1944 | 17..1960 | 9720 | 100 | Plus |
| CG8399-RB | 1971 | CG8399-PB | 1..1701 | 17..1717 | 8490 | 99.9 | Plus |
| CG8399-RB | 1971 | CG8399-PB | 1723..1971 | 1712..1960 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8399-RA | 2315 | CG8399-RA | 137..2080 | 17..1960 | 9720 | 100 | Plus |
| CG8399-RB | 2342 | CG8399-RB | 137..1837 | 17..1717 | 8490 | 99.9 | Plus |
| CG8399-RB | 2342 | CG8399-RB | 1859..2107 | 1712..1960 | 1245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16023065..16023687 | 976..1598 | 3115 | 100 | Plus |
| 2R | 25286936 | 2R | 16021904..16022376 | 17..489 | 2365 | 100 | Plus |
| 2R | 25286936 | 2R | 16022444..16022779 | 490..825 | 1680 | 100 | Plus |
| 2R | 25286936 | 2R | 16022837..16022989 | 824..976 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 16024086..16024214 | 1712..1840 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 16024272..16024392 | 1840..1960 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 16023747..16023859 | 1599..1711 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:03:28 has no hits.
BS10065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:55 Download gff for
BS10065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 1..1944 | 17..1960 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:05 Download gff for
BS10065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 129..2080 | 8..1964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:36 Download gff for
BS10065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 137..2080 | 17..1960 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:33 Download gff for
BS10065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 135..2078 | 17..1960 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:26 Download gff for
BS10065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8399-RA | 137..2080 | 17..1960 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:26 Download gff for
BS10065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16024273..16024392 | 1841..1960 | 100 | | Plus |
| 2R | 16021904..16022376 | 17..489 | 100 | -> | Plus |
| 2R | 16022444..16022778 | 490..824 | 100 | -> | Plus |
| 2R | 16022838..16022989 | 825..976 | 100 | -> | Plus |
| 2R | 16023066..16023687 | 977..1598 | 100 | -> | Plus |
| 2R | 16023747..16023859 | 1599..1711 | 100 | -> | Plus |
| 2R | 16024086..16024214 | 1712..1840 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:36 Download gff for
BS10065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11911778..11911897 | 1841..1960 | 100 | | Plus |
| arm_2R | 11909409..11909881 | 17..489 | 100 | -> | Plus |
| arm_2R | 11909949..11910283 | 490..824 | 100 | -> | Plus |
| arm_2R | 11910343..11910494 | 825..976 | 100 | -> | Plus |
| arm_2R | 11910571..11911192 | 977..1598 | 100 | -> | Plus |
| arm_2R | 11911252..11911364 | 1599..1711 | 100 | -> | Plus |
| arm_2R | 11911591..11911719 | 1712..1840 | 100 | -> | Plus |
BS10065.pep Sequence
Translation from 16 to 1959
> BS10065.pep
MMQALTMRSWLATLVTALLAVAIWPDPGQSLPQGAPETVCDTMLPFHSGG
SVLPQNSVSPFSVETSSSTLGQGQTLRVDLTGVPAGLSFGGYMIQARNRN
PPHQIIGQFGPARDGTIKLMNCENSVNNSATHSNAGPKQQVILEWQSPVD
FLGQVVFNATIAQSYNEFWVGVPSQPVQIVRRDLSAAPPLPTQSPSAPAG
TTRAPYVPPSYVAPNNVVAVSSDPIYNGCGQSKNCFGFPDGCVATKSCTS
ITVVTVRGDVFEFEIQSGKGTNAAYVAVGLSDDAKMGDDLTTECVPENGR
VNLYSSLTSASPYSAVRSNVNQNSARLLDASIVDGVIYCRVQRDAVTNVQ
GRTFDLRNGKYHLLVASGSSLKENSVGYHDIGRLPSAQPINLAEVQDLSG
SSRLLIQLHGAFMIAAWIGTTSLGIIFARYFKQTWVGSQSCGTDQWFAWH
RLLMVTTWSLTVAAYVLIWVELKQAVWHAHSIIGLITVILCFIQPIGALF
RPGPNDKKRPYFNWGHWLGGNLAHILGIVTIFFSVKLPKAELPEWMDWIL
VSFVVVHVLVHLIFSIGGMASERHLSQRANTFQMGDMSHHQQHAMRNGMS
MERKMDAPYAGMRKGLLGVYGVVLILFVTVLILLVVLAPIEQFLGKS*
BS10065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8399-PA | 647 | CG8399-PA | 1..647 | 1..647 | 3391 | 100 | Plus |
| CG8399-PB | 656 | CG8399-PB | 1..656 | 1..647 | 3371 | 98.6 | Plus |
