Clone Sequence Records
BS10067.3prime Sequence
931 bp (858 high quality bases) assembled on 2006-04-19
> BS10067.3prime
ATGGTCTAGAAAGCTTTCAAATTGGTTTGTCCGCAGCAGTCGTAGGTATT
TCCATAGGTGTTGGCTTTCGTCGGCGACCCCGTCGTTTCACTCTTAAAAT
GACCTCGTCCTTTATCTGTTCGTACTGGTAGTCTGTGTGGCCCAGGGAGC
AGCGTTTGGTCACAGTTGAGCTCTCGTCCTGCAGACTGCAGGCACCCAAA
GTTTCGTCGATGGTAACATCATGGGCTGGCACCTGCGGCGAACTATCCAT
GTTGACCTTTCTCTTCTTCACTGGGGTCTTCTCCGTGGCCGTCTTCTTAG
GCGTCGCCATCGGCGACACAGTCTTCGATTTCGTTTGGGATCTTAGTGGA
TCAGCCTGTTTTGGAGTCTGGGTGAGTATTGTGATGAGGCTTTTTGGCGT
CTGCGGCGCTCTATTCGACGTTGAGGTCACCACAGTTTCGTCCGGCGACT
GCTGGTGCAATTGCTCTAGTGCCATCTCAATGGCATCTTCTGCGATCCGC
AGTTTCGGATATGTGGATTCTGCGGTGCTCGCTGCATCCTGCTCCTTCTT
CAGCATGTCAATGGCAGTTTCCAGGATAACCTCGTCATGTTCATCGCTGT
GATCCAGTTTTGTTGAATCGGGCTTGGCGTATAATATAGTAGCAGACTTT
ATTGGAGTTTCGTCCGAGGTGGTAAAAATAGTTGGATCTTTCATCTCTGC
GCAAATCTTTTGGTCCTGTGTGGCTAGGTTCTCTTGATTTAAAGCGGAAT
CTGTGACAGCTGCTGGCGCTTCACCATGGTTGTCGACCTTTACAGCAAAA
TGGTCGATATTCGCCATCTTGGGCAACCGAATATCCCTCATAATCCTTAC
TCCCAAGTCGGACTCGACCACGGAGTTAACTTGATCCATCGGTTCTCGGA
TCTCTGCTTCATCATTCTCATCATGCTGAGA
BS10067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4616-PA | 2535 | CG4616-RA | 1716..2535 | 836..17 | 4100 | 100 | Minus |
| CG4616-PB | 2535 | CG4616-RB | 1716..2535 | 836..17 | 4100 | 100 | Minus |
| CG4616-PA | 2535 | CG4616-RA | 1621..1712 | 931..840 | 460 | 100 | Minus |
| CG4616-PB | 2535 | CG4616-RB | 1621..1712 | 931..840 | 460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FLASH-RB | 3486 | CG4616-RB | 1898..2814 | 931..15 | 4540 | 99.8 | Minus |
| FLASH-RA | 2830 | CG4616-RA | 1893..2809 | 931..15 | 4540 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13208881..13209797 | 931..15 | 4540 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:12:38 has no hits.
BS10067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:21 Download gff for
BS10067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4616-PA | 1622..2535 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:14 Download gff for
BS10067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4616-PB | 1622..2535 | 17..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:44:11 Download gff for
BS10067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FLASH-RA | 1894..2809 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:19:09 Download gff for
BS10067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FLASH-RA | 1894..2809 | 15..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:19:09 Download gff for
BS10067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13208882..13209797 | 15..930 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:44:11 Download gff for
BS10067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9096387..9097302 | 15..930 | 99 | | Minus |
BS10067.5prime Sequence
769 bp (768 high quality bases) assembled on 2006-04-19
> BS10067.5prime
GAAGTTATCAGTCGACATGGAAACGCCTGCATATGCCACGAAATCTGGCG
GAGAACTGGTGCTGCCCGAAGCTCTGGAGGACTTGATGGATTTGGAAGAC
CAGGACGCGGGCGGGATGAAGTCCAACGTTAAGGATAAATCCATGGATTT
GGATATCTATCACGATTTGTACGATATAGAGCCTGCAGGTTCAAAGAAGC
CTGACCAAATGGACAGATCCCTTGAACTGGACATCTACGATGATTTGGAC
GACTTTCAGAAGGCCGAAGATCGTAATACCAAGGAGCTACAGGCATGGGA
AGCCAAATACGAAAAGGCACTGGCCGAAATTGAAGCGCTAAAGGTTGAGA
ATAAGGCACTTGGCAAGAAGATAAAAACCATGGAGGTTAATCTACAGAAT
CTACTGGACACAGCTAAGGCGGAGGTAAAGAGAAAAGAGACACTGATTGC
CGAGCTGCGAAACGAAAAGGACGATGTATGCTTCCGACGAAAACGAGCAC
GGGCGTTTGACGTACCAGGTGCAAGGGAACCCGAAAGTAAGCGTCCGAAA
GAATTTCAATCTACACCAATCGATGTCAGGAAATATCCGGAAACGAATAG
AAATCCGTTCAAAACGGCTGCAAAGGACGCCGCTAAGGATGATGCTAGGA
AGATGATGACCAAAAAAGATGACACAACGAAAGTCGTATCANAAGATGTT
GAAAGAGGCGTAAAATCCAAGGAGGATAATAAGATGGCGACCAATAAAGA
TGATGACAAGAAGTCATCC
BS10067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4616-PA | 2535 | CG4616-RA | 1..753 | 17..769 | 3746 | 99.8 | Plus |
| CG4616-PB | 2535 | CG4616-RB | 1..753 | 17..769 | 3746 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FLASH-RB | 3486 | CG4616-RB | 278..1030 | 17..769 | 3754 | 99.9 | Plus |
| FLASH-RA | 2830 | CG4616-RA | 273..1025 | 17..769 | 3754 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13207651..13207954 | 466..769 | 1509 | 99.7 | Plus |
| 2R | 25286936 | 2R | 13207092..13207349 | 17..274 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 13207406..13207596 | 275..465 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:47:17 has no hits.
BS10067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:22 Download gff for
BS10067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4616-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:16 Download gff for
BS10067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4616-PB | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:44 Download gff for
BS10067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FLASH-RA | 273..1025 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:37 Download gff for
BS10067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FLASH-RA | 273..1025 | 17..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:37 Download gff for
BS10067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13207092..13207349 | 17..274 | 100 | -> | Plus |
| 2R | 13207406..13207596 | 275..465 | 100 | -> | Plus |
| 2R | 13207651..13207954 | 466..769 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:44 Download gff for
BS10067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9094597..9094854 | 17..274 | 100 | -> | Plus |
| arm_2R | 9094911..9095101 | 275..465 | 100 | -> | Plus |
| arm_2R | 9095156..9095459 | 466..769 | 99 | | Plus |
BS10067.complete Sequence
2567 bp assembled on 2009-12-07
GenBank Submission: KX804621
> BS10067.complete
GAAGTTATCAGTCGACATGGAAACGCCTGCATATGCCACGAAATCTGGCG
GAGAACTGGTGCTGCCCGAAGCTCTGGAGGACTTGATGGATTTGGAAGAC
CAGGACGCGGGCGGGATGAAGTCCAACGTTAAGGATAAATCCATGGATTT
GGATATCTATCACGATTTGTACGATATAGAGCCTGCAGGTTCAAAGAAGC
CTGACCAAATGGACAGATCCCTTGAACTGGACATCTACGATGATTTGGAC
GACTTTCAGAAGGCCGAAGATCGTAATACCAAGGAGCTACAGGCATGGGA
AGCCAAATACGAAAAGGCACTGGCCGAAATTGAAGCGCTAAAGGTTGAGA
ATAAGGCACTTGGCAAGAAGATAAAAACCATGGAGGTTAATCTACAGAAT
CTACTGGACACAGCTAAGGCGGAGGTAAAGAGAAAAGAGACACTGATTGC
CGAGCTGCGAAACGAAAAGGACGATGTATGCTTCCGACGAAAACGAGCAC
GGGCGTTTGACGTACCAGGTGCAAGGGAACCCGAAAGTAAGCGTCCGAAA
GAATTTCAATCTACACCAATCGATGTCAGGAAATATCCGGAAACGAATAG
AAATCCGTTCAAAACGGCTGCAAAGGACGCCGCTAAGGATGATGCTAGGA
AGATGATGACCAAAAAAGATGACACAACGAAAGTCGTATCAAAAGATGTT
GAAAGAGGCGTAAAATCCAAGGAGGATAATAAGATGGCGACCAATAAAGA
TGATGACAAGAAGTCATCCTCAAAGGATGATGCTTGGAAATCTAGGACAA
GAGAAGACGCCAAGAAATCGGTCCAAAGAAGCAAGTCTCCCAGGCCGGAA
CACTCAAAGACCACCGATCGGAAATCTACTGCACAGGCTCGTCGTCCAGA
TCCACATCGCAGCCGGAGTCCAAAACATAATTCCCGGCGAGATCATCACA
GGAATCAAGAAAGCAGTTCCCGGCACGCCAAACGGCGAAGCCAATCCGCA
TCGCCCAGCAAGATACAATTGCCAAGAGAAAAAGCAAATGCCATCATCAC
ACTTACTGACGATGAAACAAATGACCAACGCAGCAAGAGCCCAGTCCCCG
TGACCGTCAAACTCGTAACTGAATCTCAACCGGCTGAAAAAGTCGTTTCC
AACCGAAGGGATGCTGCTTTAGAAACCAATGCAAATTCCTCAAAGGAATC
AAAAGTAGAGACGAAGGATATTACTCAACCGACAAATGGTTTAATTGCTG
AACCTTGTATTCCAAAACATGAGATTATTCCGGGGTTAAGCTTAATTAAC
CCAGAATCGGCGGATTTTTCTAAAAATGAGATCAAGTTAGATCCTGTAAT
CTTACAGGATCGTACAGAAGACTCTGGCCACCAACTTTTAAATAAGGAGC
CTATTCCCAAAGTTGTAGTACTTGAAAAATGTAAAAACATTTTAGCTGAA
GATTGCCCAGCTGATGAGCAACCCCTGGACAAATTCAAGGATGGAAAAGA
ATCTGAAGAGACACAGGCAAAGTTAGACAAAAAAGAGCCTTTTGCAGTTG
AAACTGCTGTTGAAACTCCTAGCAAAGAAGAAAGCAACGACAACATAGTA
TTATCAAAGAATACGACGTCTCAAGCTGATGTGTGTTCTCAGCATGATGA
GAATGATGAAGCAGAGATCCGAGAACCGATGGATCAAGTTAACTCCGTGG
TCGAGTCCGACTTGGGAGTAAGGATTATTGAGGATATTCGGTTGCCCAAG
ATGGCGAATATCGACCATTTTGCTGTAAAGGTCGACAACCATGGTGAAGC
GCCAGCAGCTGTCACAGATTCCGCTTTAAATCAAGAGAACCTAGCCACAC
AGGACCAAAAGATTTGCGCAGAGATGAAAGATCCAACTATTTTTACCACC
TCGGACGAAACTCCAATAAAGTCTGCTACTATATTATACGCCAAGCCCGA
TTCAACAAAACTGGATCACAGCGATGAACATGACGAGGTTATCCTGGAAA
CTGCCATTGACATGCTGAAGAAGGAGCAGGATGCAGCGAGCACCGCAGAA
TCCACATATCCGAAACTGCGGATCGCAGAAGATGCCATTGAGATGGCACT
AGAGCAATTGCACCAGCAGTCGCCGGACGAAACTGTGGTGACCTCAACGT
CGAATAGAGCGCCGCAGACGCCAAAAAGCCTCATCACAATACTCACCCAG
ACTCCAAAACAGGCTGATCCACTAAGATCCCAAACGAAATCGAAGACTGT
GTCGCCGATGGCGACGCCTAAGAAGACGGCCACGGAGAAGACCCCAGTGA
AGAAGAGAAAGGTCAACATGGATAGTTCGCCGCAGGTGCCAGCCCATGAT
GTTACCATCGACGAAACTTTGGGTGCCTGCAGTCTGCAGGACGAGAGCTC
AACTGTGACCAAACGCTGCTCCCTGGGCCACACAGACTACCAGTACGAAC
AGATAAAGGACGAGGTCATTTTAAGAGTGAAACGACGGGGTCGCCGACGA
AAGCCAACACCTATGGAAATACCTACGACTGCTGCGGACAAACCAATTTG
AAAGCTTTCTAGACCAT
BS10067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FLASH-RB | 2535 | CG4616-PB | 1..2535 | 17..2551 | 12675 | 100 | Plus |
| FLASH-RA | 2535 | CG4616-PA | 1..2535 | 17..2551 | 12675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FLASH-RB | 3486 | CG4616-RB | 278..2814 | 17..2553 | 12685 | 100 | Plus |
| FLASH-RA | 2830 | CG4616-RA | 273..2809 | 17..2553 | 12685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13208251..13209797 | 1007..2553 | 7735 | 100 | Plus |
| 2R | 25286936 | 2R | 13207651..13208193 | 466..1008 | 2715 | 100 | Plus |
| 2R | 25286936 | 2R | 13207092..13207349 | 17..274 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 13207406..13207596 | 275..465 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:13:18 has no hits.
BS10067.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:51 Download gff for
BS10067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4616-RB | 267..2800 | 17..2550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:00 Download gff for
BS10067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FLASH-RA | 273..2806 | 17..2550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:58 Download gff for
BS10067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4616-RB | 267..2800 | 17..2550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:31 Download gff for
BS10067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FLASH-RA | 273..2806 | 17..2550 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:31 Download gff for
BS10067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13207092..13207349 | 17..274 | 100 | -> | Plus |
| 2R | 13207406..13207596 | 275..465 | 100 | -> | Plus |
| 2R | 13207651..13208193 | 466..1008 | 100 | -> | Plus |
| 2R | 13208253..13209794 | 1009..2550 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:00 Download gff for
BS10067.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9094597..9094854 | 17..274 | 100 | -> | Plus |
| arm_2R | 9094911..9095101 | 275..465 | 100 | -> | Plus |
| arm_2R | 9095156..9095698 | 466..1008 | 100 | -> | Plus |
| arm_2R | 9095758..9097299 | 1009..2550 | 100 | | Plus |
BS10067.pep Sequence
Translation from 16 to 2550
> BS10067.pep
METPAYATKSGGELVLPEALEDLMDLEDQDAGGMKSNVKDKSMDLDIYHD
LYDIEPAGSKKPDQMDRSLELDIYDDLDDFQKAEDRNTKELQAWEAKYEK
ALAEIEALKVENKALGKKIKTMEVNLQNLLDTAKAEVKRKETLIAELRNE
KDDVCFRRKRARAFDVPGAREPESKRPKEFQSTPIDVRKYPETNRNPFKT
AAKDAAKDDARKMMTKKDDTTKVVSKDVERGVKSKEDNKMATNKDDDKKS
SSKDDAWKSRTREDAKKSVQRSKSPRPEHSKTTDRKSTAQARRPDPHRSR
SPKHNSRRDHHRNQESSSRHAKRRSQSASPSKIQLPREKANAIITLTDDE
TNDQRSKSPVPVTVKLVTESQPAEKVVSNRRDAALETNANSSKESKVETK
DITQPTNGLIAEPCIPKHEIIPGLSLINPESADFSKNEIKLDPVILQDRT
EDSGHQLLNKEPIPKVVVLEKCKNILAEDCPADEQPLDKFKDGKESEETQ
AKLDKKEPFAVETAVETPSKEESNDNIVLSKNTTSQADVCSQHDENDEAE
IREPMDQVNSVVESDLGVRIIEDIRLPKMANIDHFAVKVDNHGEAPAAVT
DSALNQENLATQDQKICAEMKDPTIFTTSDETPIKSATILYAKPDSTKLD
HSDEHDEVILETAIDMLKKEQDAASTAESTYPKLRIAEDAIEMALEQLHQ
QSPDETVVTSTSNRAPQTPKSLITILTQTPKQADPLRSQTKSKTVSPMAT
PKKTATEKTPVKKRKVNMDSSPQVPAHDVTIDETLGACSLQDESSTVTKR
CSLGHTDYQYEQIKDEVILRVKRRGRRRKPTPMEIPTTAADKPI*
BS10067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FLASH-PB | 844 | CG4616-PB | 1..844 | 1..844 | 4305 | 100 | Plus |
| FLASH-PA | 844 | CG4616-PA | 1..844 | 1..844 | 4305 | 100 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3475..4287 | 25..798 | 206 | 19 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3514..4326 | 25..798 | 206 | 19 | Plus |
| Strn-Mlck-PS | 8216 | CG44162-PS | 3475..4287 | 25..798 | 206 | 19 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4320..5093 | 25..816 | 202 | 19.9 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 4359..5132 | 25..816 | 202 | 19.9 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4125..4844 | 25..770 | 201 | 19.7 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 4164..4883 | 25..770 | 201 | 19.7 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4515..5178 | 25..704 | 165 | 18.7 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 4554..5217 | 25..704 | 165 | 18.7 | Plus |
