Clone Sequence Records
BS10068.3prime Sequence
903 bp (766 high quality bases) assembled on 2006-04-19
> BS10068.3prime
ATGGTCTAGAAAGCTTCTAGATGAATCTAGTTAGCAGGGAAGAGAGCAGA
AGCAAGGAGATGGAGGCCACAATACCAGACGCCGATCCGGTGTCAGCCTT
CTCGTGAATCACAATTCGTTCCTCGATCTCGGGATACACGAAATGGCGCT
GCTTCAGGTACTCCATGGTAGCATTCAGATCGTTTCGCTGCATGCTCTCG
GTGAAGGGATCCGACTCCTCGATCAGAGTGTAGCCATCGCCGCCTTCCAG
CAGGAACTGGGGCACGATCACTTGGTACAGGGCCGTCTCATTGATGCTCT
TGTACGTGGGCACGGCGCAGCTGGCGCATAGGGCCTGTGCGGAAACCACT
CGCTTGCCCTGCTCATTGTTGTAGTTGTACACCACACGCAGTCCGGACAT
CTGCAGGAATCCACCATTGGAGTCCTGCAACCTCACAGACGCGGAGTGTT
CCAGGGCAGCCAGAAGGGTGCTTCCGAGAATCCTTGTCACGTACAGATTA
TTCTCGAACGGAAGAACGGCTAAGAGGGTGGCGCCATTGATGACTCCATC
ATCCTTCTTATCGACGGAGCCACGGATTCCTCCTCCCTGCATAAAAGCAA
TCGCAGTATCTGTCCAGAATTCGCCGCCCTTGTTTTCCAACACGCGACTA
TAGATCATGGCATCTGTCACCAAGTTGCCAAGGTTGCACTCCCTCATGCG
GCAGATGTTGCCGCCCTCGAGAAACACCTTAGTGTAACCCAGAACCGTGT
TCTCCAGCTCGTCCAGCTTGGGGCGGTATTCGTCTAGCAAATCCAGGAGA
TCCTGCTCCTGAGCTACAGAGGCATTCAGCAAAATGGGAGCGCCATCAAA
CTCGATCAGATTTCCCTCGGCATCAAACTGAACATGAATCTTTCCGAGAT
ACT
BS10068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4827-PA | 1800 | CG4827-RA | 914..1800 | 903..17 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:20:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| veil-RB | 2220 | CG4827-RB | 1153..2039 | 903..17 | 4435 | 100 | Minus |
| veil-RA | 2021 | CG4827-RA | 954..1840 | 903..17 | 4435 | 100 | Minus |
| CG43110-RB | 8272 | CG43110-RB | 3900..4464 | 17..581 | 2825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17481373..17481937 | 581..17 | 2825 | 100 | Minus |
| 2R | 25286936 | 2R | 17481013..17481314 | 880..579 | 1510 | 100 | Minus |
| 2R | 25286936 | 2R | 17492277..17492390 | 692..579 | 195 | 78.1 | Minus |
Blast to na_te.dros performed on 2015-02-01 10:20:27 has no hits.
BS10068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:23 Download gff for
BS10068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4827-PA | 914..1800 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:17 Download gff for
BS10068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4827-PA | 914..1800 | 17..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:26:25 Download gff for
BS10068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veil-RA | 954..1850 | 9..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:03:22 Download gff for
BS10068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veil-RA | 954..1850 | 9..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:03:22 Download gff for
BS10068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17480920..17480945 | 878..903 | 100 | -> | Minus |
| 2R | 17481016..17481313 | 580..877 | 100 | -> | Minus |
| 2R | 17481375..17481947 | 9..579 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:26:25 Download gff for
BS10068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13368425..13368450 | 878..903 | 100 | -> | Minus |
| arm_2R | 13368521..13368818 | 580..877 | 100 | -> | Minus |
| arm_2R | 13368880..13369452 | 9..579 | 99 | | Minus |
BS10068.5prime Sequence
907 bp (806 high quality bases) assembled on 2006-04-19
> BS10068.5prime
GAAGTTATCAGTCGACATGTTACCTGCCCGTGGTCTCCTTATCGGATCAT
GCTGCCTACTGGCTCTACTGATTCATCCTGTGCAGCCGAATCCCATTGCA
CCCCGGGCGGAAGTTGCCGCCGAGTTCATCATTCTGCACAACAATGACAT
GCACGCCCGATTCGAGCAGACGAGTGTGACCAGTGGCACCTGCTCCAAGG
AGGAGGCCAATACGGATCAGTGCTACGGAGGATTCGCCAGGGTGGCATAC
GAGGTGCGAAAGTATCGCAAGGAGGCGGAGGAGGGTGGAACTCCAGTGTT
TTATCTCAATGCAGGTGACACCTATACCGGAACTGCTTGGTTCACCGTCT
ATAAGGACAAGATCGCCAGTGCTTTCCTCAACAAGCTATCGCCAGATGCT
ATTTCTCTGGGCAACCATGAGTTTGATCAGAATGTTGAGGGTTTGGTGCC
CTTCCTAAATGCCGTGGAATTCCCTGTTTTGGCCTGTAATCTGAACCTCA
CCGATGTTCCGGAAATGGCGGCTGCCAAGCAGCTGGCCAACTCGACGATC
CTCGAGAGAAATGGGGTGAAGGTTGGCGTTATCGGTTACCTTACGCCCGA
TACCAAGGTGCTTGCCTTTCGGAACAAAGTGGAGTACGAGGAGGAAATCG
TGTCCATCAATGCGGAGGCCGCAAAGCTAAAGGCTCAAGGCATCAATATC
ATCATCGCTTTGGGTCACTCTGGATACCAAAAGGATCAGGAGATAGCCAT
GAACTGCCCGGAGGTGGACATAGTCATTGGTGGCCATTCGCACACATTCT
TAGATGCCAATCAGCCGGTGGCCGATCCCACGGACTCTGATCCGGAGGCG
GTTCGAGGTCCCTATCCACCACAGTGGTGCAGGCGAGCGGCAGAAAGTAC
CAGTGGG
BS10068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4827-PA | 1800 | CG4827-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
| CG30104-PB | 1758 | CG30104-RB | 703..759 | 731..787 | 160 | 91.2 | Plus |
| CG30104-PA | 1758 | CG30104-RA | 703..759 | 731..787 | 160 | 91.2 | Plus |
| CG4827-PA | 1800 | CG4827-RA | 851..877 | 866..892 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| veil-RB | 2220 | CG4827-RB | 240..1131 | 17..906 | 4395 | 99.7 | Plus |
| veil-RA | 2021 | CG4827-RA | 41..932 | 17..906 | 4395 | 99.7 | Plus |
| CG43110-RB | 8272 | CG43110-RB | 5249..5505 | 660..404 | 1285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17480332..17480588 | 404..660 | 1285 | 100 | Plus |
| 2R | 25286936 | 2R | 17479824..17480060 | 17..253 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 17480651..17480898 | 661..906 | 1125 | 98.8 | Plus |
| 2R | 25286936 | 2R | 17480117..17480267 | 253..403 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 17491751..17491873 | 673..795 | 285 | 82.1 | Plus |
| 2R | 25286936 | 2R | 17491022..17491164 | 111..253 | 280 | 79.7 | Plus |
| 2R | 25286936 | 2R | 17491219..17491346 | 257..384 | 235 | 78.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:36:44 has no hits.
BS10068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:24 Download gff for
BS10068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4827-PA | 1..892 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:19 Download gff for
BS10068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4827-PA | 1..892 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:42 Download gff for
BS10068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veil-RA | 32..932 | 7..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:02 Download gff for
BS10068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veil-RA | 32..932 | 7..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:02 Download gff for
BS10068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17479817..17480059 | 9..252 | 98 | -> | Plus |
| 2R | 17480117..17480267 | 253..403 | 100 | -> | Plus |
| 2R | 17480332..17480588 | 404..660 | 100 | -> | Plus |
| 2R | 17480651..17480898 | 661..907 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:42 Download gff for
BS10068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13367322..13367564 | 9..252 | 98 | -> | Plus |
| arm_2R | 13367622..13367772 | 253..403 | 100 | -> | Plus |
| arm_2R | 13367837..13368093 | 404..660 | 100 | -> | Plus |
| arm_2R | 13368156..13368403 | 661..907 | 98 | | Plus |
BS10068.complete Sequence
1832 bp assembled on 2007-11-30
GenBank Submission: FJ636549
> BS10068.complete
GAAGTTATCAGTCGACATGTTACCTGCCCGTGGTCTCCTTATCGGATCAT
GCTGCCTACTGGCTCTACTGATTCATCCTGTGCAGCCGAATCCCATTGCA
CCCCGGGCGGAAGTTGCCGCCGAGTTCATCATTCTGCACAACAATGACAT
GCACGCCCGATTCGAGCAGACGAGTGTGACCAGTGGCACCTGCTCCAAGG
AGGAGGCCAATACGGATCAGTGCTACGGAGGATTCGCCAGGGTGGCATAC
GAGGTGCGAAAGTATCGCAAGGAGGCGGAGGAGGGTGGAACTCCAGTGTT
TTATCTCAATGCAGGTGACACCTATACCGGAACTGCTTGGTTCACCGTCT
ATAAGGACAAGATCGCCAGTGCTTTCCTCAACAAGCTATCGCCAGATGCT
ATTTCTCTGGGCAACCATGAGTTTGATCAGAATGTTGAGGGTTTGGTGCC
CTTCCTAAATGCCGTGGAATTCCCTGTTTTGGCCTGTAATCTGAACCTCA
CCGATGTTCCGGAAATGGCGGCTGCCAAGCAGCTGGCCAACTCGACGATC
CTCGAGAGAAATGGGGTGAAGGTTGGCGTTATCGGTTACCTTACGCCCGA
TACCAAGGTGCTTGCCTTTCGGAACAAAGTGGAGTACGAGGAGGAAATCG
TGTCCATCAATGCGGAGGCCGCAAAGCTAAAGGCTCAAGGCATCAATATC
ATCATCGCTTTGGGTCACTCTGGATACCAAAAGGATCAGGAGATAGCCAT
GAACTGCCCGGAGGTGGACATAGTCATTGGTGGCCATTCGCACACATTCT
TAGATGCCAATCAGCCGGTGGCCGATCCCACGGACTCTGATCCGGAGGCG
GTTCGAGGTCCCTATCCCACCACAGTGGTGCAGGCGAGCGGCAAGAAGGT
ACCAGTGGTTCAGGCATACGCGTATACCAAGTATCTCGGAAAGATTCATG
TTCAGTTTGATGCCGAGGGAAATCTGATCGAGTTTGATGGCGCTCCCATT
TTGCTGAATGCCTCTGTAGCTCAGGAGCAGGATCTCCTGGATTTGCTAGA
CGAATACCGCCCCAAGCTGGACGAGCTGGAGAACACGGTTCTGGGTTACA
CTAAGGTGTTTCTCGAGGGCGGCAACATCTGCCGCATGAGGGAGTGCAAC
CTTGGCAACTTGGTGACAGATGCCATGATCTATAGTCGCGTGTTGGAAAA
CAAGGGCGGCGAATTCTGGACAGATACTGCGATTGCTTTTATGCAGGGAG
GAGGAATCCGTGGCTCCGTCGATAAGAAGGATGATGGAGTCATCAATGGC
GCCACCCTCTTAGCCGTTCTTCCGTTCGAGAATAATCTGTACGTGACAAG
GATTCTCGGAAGCACCCTTCTGGCTGCCCTGGAACACTCCGCGTCTGTGA
GGTTGCAGGACTCCAATGGTGGATTCCTGCAGATGTCCGGACTGCGTGTG
GTGTACAACTACAACAATGAGCAGGGCAAGCGAGTGGTTTCCGCACAGGC
CCTATGCGCCAGCTGCGCCGTGCCCACGTACAAGAGCATCAATGAGACGG
CCCTGTACCAAGTGATCGTGCCCCAGTTCCTGCTGGAAGGCGGCGATGGC
TACACTCTGATCGAGGAGTCGGATCCCTTCACCGAGAGCATGCAGCGAAA
CGATCTGAATGCTACCATGGAGTACCTGAAGCAGCGCCATTTCGTGTATC
CCGAGATCGAGGAACGAATTGTGATTCACGAGAAGGCTGACACCGGATCG
GCGTCTGGTATTGTGGCCTCCATCTCCTTGCTTCTGCTCTCTTCCCTGCT
AACTAGATTCATCTAGAAGCTTTCTAGACCAT
BS10068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| veil-RB | 1800 | CG4827-PB | 1..1800 | 17..1816 | 9000 | 100 | Plus |
| veil-RA | 1800 | CG4827-PA | 1..1800 | 17..1816 | 9000 | 100 | Plus |
| NT5E-2-RA | 1758 | CG30104-PA | 83..767 | 111..795 | 755 | 74 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| veil-RB | 2220 | CG4827-RB | 240..2039 | 17..1816 | 9000 | 100 | Plus |
| veil-RA | 2021 | CG4827-RA | 41..1840 | 17..1816 | 9000 | 100 | Plus |
| CG43110-RB | 8272 | CG43110-RB | 3900..4464 | 1816..1252 | 2825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17481373..17481937 | 1252..1816 | 2825 | 100 | Plus |
| 2R | 25286936 | 2R | 17481013..17481314 | 953..1254 | 1510 | 100 | Plus |
| 2R | 25286936 | 2R | 17480651..17480945 | 661..955 | 1475 | 100 | Plus |
| 2R | 25286936 | 2R | 17480332..17480588 | 404..660 | 1285 | 100 | Plus |
| 2R | 25286936 | 2R | 17479824..17480060 | 17..253 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 17480117..17480267 | 253..403 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 17491751..17491873 | 673..795 | 285 | 82.1 | Plus |
| 2R | 25286936 | 2R | 17491022..17491164 | 111..253 | 280 | 79.7 | Plus |
| 2R | 25286936 | 2R | 17491219..17491346 | 257..384 | 235 | 78.9 | Plus |
| 2R | 25286936 | 2R | 17492277..17492390 | 1141..1254 | 195 | 78.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:12:19 has no hits.
BS10068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:56 Download gff for
BS10068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4827-RA | 1..1800 | 17..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:07 Download gff for
BS10068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4827-RA | 55..1873 | 7..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:39 Download gff for
BS10068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veil-RA | 46..1840 | 22..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:12 Download gff for
BS10068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4827-RA | 69..1863 | 22..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:42 Download gff for
BS10068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veil-RA | 46..1840 | 22..1816 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:42 Download gff for
BS10068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17481016..17481313 | 956..1253 | 100 | -> | Plus |
| 2R | 17480651..17480945 | 661..955 | 100 | -> | Plus |
| 2R | 17479829..17480059 | 22..252 | 100 | -> | Plus |
| 2R | 17480117..17480267 | 253..403 | 100 | -> | Plus |
| 2R | 17480332..17480588 | 404..660 | 100 | -> | Plus |
| 2R | 17481375..17481937 | 1254..1816 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:39 Download gff for
BS10068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13368156..13368450 | 661..955 | 100 | -> | Plus |
| arm_2R | 13368521..13368818 | 956..1253 | 100 | -> | Plus |
| arm_2R | 13367334..13367564 | 22..252 | 100 | -> | Plus |
| arm_2R | 13367622..13367772 | 253..403 | 100 | -> | Plus |
| arm_2R | 13367837..13368093 | 404..660 | 100 | -> | Plus |
| arm_2R | 13368880..13369442 | 1254..1816 | 100 | | Plus |
BS10068.pep Sequence
Translation from 16 to 1815
> BS10068.pep
MLPARGLLIGSCCLLALLIHPVQPNPIAPRAEVAAEFIILHNNDMHARFE
QTSVTSGTCSKEEANTDQCYGGFARVAYEVRKYRKEAEEGGTPVFYLNAG
DTYTGTAWFTVYKDKIASAFLNKLSPDAISLGNHEFDQNVEGLVPFLNAV
EFPVLACNLNLTDVPEMAAAKQLANSTILERNGVKVGVIGYLTPDTKVLA
FRNKVEYEEEIVSINAEAAKLKAQGINIIIALGHSGYQKDQEIAMNCPEV
DIVIGGHSHTFLDANQPVADPTDSDPEAVRGPYPTTVVQASGKKVPVVQA
YAYTKYLGKIHVQFDAEGNLIEFDGAPILLNASVAQEQDLLDLLDEYRPK
LDELENTVLGYTKVFLEGGNICRMRECNLGNLVTDAMIYSRVLENKGGEF
WTDTAIAFMQGGGIRGSVDKKDDGVINGATLLAVLPFENNLYVTRILGST
LLAALEHSASVRLQDSNGGFLQMSGLRVVYNYNNEQGKRVVSAQALCASC
AVPTYKSINETALYQVIVPQFLLEGGDGYTLIEESDPFTESMQRNDLNAT
MEYLKQRHFVYPEIEERIVIHEKADTGSASGIVASISLLLLSSLLTRFI*
BS10068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| veil-PB | 599 | CG4827-PB | 1..599 | 1..599 | 3076 | 100 | Plus |
| veil-PA | 599 | CG4827-PA | 1..599 | 1..599 | 3076 | 100 | Plus |
| NT5E-2-PA | 585 | CG30104-PA | 13..584 | 17..599 | 1922 | 63.5 | Plus |
| NT5E-2-PB | 585 | CG30104-PB | 13..584 | 17..599 | 1922 | 63.5 | Plus |
| CG30103-PA | 584 | CG30103-PA | 26..556 | 36..573 | 1232 | 43.7 | Plus |
