Clone BS10071 Report

Search the DGRC for BS10071

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG5844-RA
Protein status:BS10071.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10071.3prime Sequence

962 bp (745 high quality bases) assembled on 2006-04-19

> BS10071.3prime
ATGGTCTAGAAAGCTTCTACTTTTCGTTTGGCTTATCCTTGGGATCTTTA
CTATCGACACTTTCAGCCGCACTTTCCTCGGTCTTCTTCGACCTTTTCTG
CGCCTTTTCAGCCTGCTTTTGCTTTTCGGCCTCAGCCAGAGCAGCCTCCT
GCTCCTGTTTTAGTTTTTCCTTCTGCGCTGCAGCCTCAGCCACTTCCTCA
TCGTCCCAGTCGGCCATCGAGCGGTCGCGCTTTAGCCACGAATGCGTGGT
GTCCGGCTTGAAGGTCTGGTTGAACCATTTGATGCCGTTCTGCATGTCCT
CGATGATTTCACGGGACGTGAACATCACCTCATTCTGCACCGCCTGGTGG
AACGTTGAGGTCTCGAACGTGCTCGAGTAGACCGAGTTGCGATCGTGGAT
GAGCGCGCGTTGCGGGAACTTGGCCAGACAGGTGGCCAGCTCCAGGGCAT
TGCCCAAGGCCGTGCCTGTGGGCACAATCCTGTTGACCAGTCCAATGTCG
TGGGCCTCCTGGGAGCCCACCGGACGTCCCGTAAGTATCAGGTCCAGGGC
ACGCGACAATCCAATCATAGCCGGCAGCCGGATGGTGCCGGCATCGAGCA
TTGGCACTCCAAAGCGTCGATTGAAAAATCCCAGTACTGCGGACTCCTCC
ATCACGCGCAGATCGCACATGAGAGCCAGCTCCAGACCGTTGGCTATGCA
GTAGCCATTGATGCCGCACACGACCGGCTTCTTGATCTGGCGACGCGTGG
GACCCACGGAGCCCTCCGGTCGCATCAGGATGTCCACGCTGATCTCCTCC
TTCTCGTCGGTGCTAATCTCCAGGATGTCGAAGCCGGAGCAAAAGGAGCC
GCCCACGCCGTACAGCACGGCCACCGGCGACGTGTCGTCCGCCTCGAAAT
TGGCGAAGGCGTCGCAAAGCTGCGATGCAGTAAGCGAATCGATGGCATTA
CGCTGCTGCGGG

BS10071.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-PA 1137 CG5844-RA 193..1137 961..17 4725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:15:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-RA 1355 CG5844-RA 277..1221 961..17 4725 100 Minus
CG5611-RC 1375 CG5611-RC 470..548 684..606 200 83.5 Minus
CG5611-RA 1096 CG5611-RA 470..548 684..606 200 83.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12434506..12435202 961..265 3485 100 Minus
3R 32079331 3R 12435262..12435509 264..17 1240 100 Minus
3R 32079331 3R 27635513..27635591 606..684 200 83.5 Plus
Blast to na_te.dros performed on 2015-02-01 10:15:44 has no hits.

BS10071.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:29 Download gff for BS10071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-PA 192..1137 17..962 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:27 Download gff for BS10071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-PA 192..1137 17..962 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:25:31 Download gff for BS10071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 272..1217 17..962 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:02:39 Download gff for BS10071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 276..1221 17..962 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:02:39 Download gff for BS10071.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12434505..12435202 265..962 99 -> Minus
3R 12435262..12435509 17..264 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:25:31 Download gff for BS10071.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8260227..8260924 265..962 99 -> Minus
arm_3R 8260984..8261231 17..264 100   Minus

BS10071.5prime Sequence

979 bp (809 high quality bases) assembled on 2006-04-19

> BS10071.5prime
GAAGTTATCAGTCGACATGCTTCGCAAATTTGGAGGTCTGTTGGCCCAGC
AGGTGGGTCAGCAAGCACGTTTCACCGCCGCGAGTCGCACATTTTCCTCG
ACAAAAGCGCTGCACAAAGATCCAGCGACCCAGGAAGCAGAGGCGGCGCC
ACCGAAGAACATCCTTGTGGAAAAGGATAAGAACATCACGCTGATCGGCA
TCAATCGACCGCAGCAGCGTAATGCCATCGATTCGCTTACTGCATCGCAG
CTTTGCGACGCCTTCGCCAATTTCGAGGCGGACGACACGTCGCCGGTGGC
CGTGCTGTACGGCGTGGGCGGCTCCTTTTGCTCCGGCTTCGACATCCTGG
AGATTAGCACCGACGAGAAGGAGGAGATCAGCGTGGACATCCTGATGCGA
CCGGAGGGCTCCGTGGGTCCCACGCGTCGCCAGATCAAGAAGCCGGTCGT
GTGCGGCATCAATGGCTACTGCATAGCCAACGGTCTGGAGCTGGCTCTCA
TGTGCGATCTGCGCGTGATGGAGGAGTCCGCAGTACTGGGATTTTTCAAT
CGACGCTTTGGAGTGCCAATGCTCGATGCCGGCACCATCCGGCTGCCGGC
TATGATTGGATTGTCGCGTGCCCTGGACCTGATACTTACGGGACGTCCGG
TGGGCTCCCAGGAGGCCCACGACATTGGACTGGTCAACAGGATTGTGCCC
ACAGGCACGGCCTTGGGCAATGCCCTGGAGCTGGCCACCTGTCTGGCCAA
GTTCCCGCAACGCGCGCTCATCCACGATCGCAACTCGGTCTACTCGAGCA
CGTTCGAGACCTNCACGTTCCACCAGGCGGTGCAGAATGAGGTGATGTTC
ACGTCCCGTGAAATCATCGAGGACATGCAGAACGGCATCAAATGGTTCAA
CCAGACTTCAAGCCGGGACACACGCATTCGTGGCTAAAGCGCGACCGCTC
GATGGCCGACTGGAACGATGAAGAAGTGG

BS10071.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-PA 1137 CG5844-RA 1..890 17..906 4406 99.7 Plus
CG5844-PA 1137 CG5844-RA 906..964 921..979 245 96.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-RA 1355 CG5844-RA 84..1048 16..979 4699 99.3 Plus
CG5611-RC 1375 CG5611-RC 470..548 486..564 200 83.5 Plus
CG5611-RA 1096 CG5611-RA 470..548 486..564 200 83.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12434415..12435202 118..905 3914 99.7 Plus
3R 32079331 3R 12434242..12434345 16..119 520 100 Plus
3R 32079331 3R 12435259..12435336 902..979 285 91 Plus
3R 32079331 3R 27635513..27635591 564..486 200 83.5 Minus
Blast to na_te.dros performed on 2015-02-12 06:26:31 has no hits.

BS10071.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:30 Download gff for BS10071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-PA 1..964 17..979 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:28 Download gff for BS10071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-PA 1..964 17..979 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:37:05 Download gff for BS10071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 74..1044 8..979 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:07:52 Download gff for BS10071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 78..1048 8..979 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:07:52 Download gff for BS10071.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12434242..12434345 16..119 100 -> Plus
3R 12434417..12435202 120..905 99 -> Plus
3R 12435262..12435336 906..979 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:37:05 Download gff for BS10071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8259964..8260067 16..119 100 -> Plus
arm_3R 8260139..8260924 120..905 99 -> Plus
arm_3R 8260984..8261058 906..979 93   Plus

BS10071.complete Sequence

1169 bp (1169 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636550

> BS10071.complete
GAAGTTATCAGTCGACATGCTTCGCAAATTTGGAGGTCTGTTGGCCCAGC
AGGTGGGTCAGCAAGCACGTTTCACCGCCGCGAGTCGCACATTTTCCTCG
ACAAAAGCGCTGCACAAAGATCCAGCGACCCAGGAAGCAGAGGCGGCGCC
ACCGAAGAACATCCTTGTGGAAAAGGATAAGAACATCACGCTGATCGGCA
TCAATCGACCGCAGCAGCGTAATGCCATCGATTCGCTTACTGCATCGCAG
CTTTGCGACGCCTTCGCCAATTTCGAGGCGGACGACACGTCGCCGGTGGC
CGTGCTGTACGGCGTGGGCGGCTCCTTTTGCTCCGGCTTCGACATCCTGG
AGATTAGCACCGACGAGAAGGAGGAGATCAGCGTGGACATCCTGATGCGA
CCGGAGGGCTCCGTGGGTCCCACGCGTCGCCAGATCAAGAAGCCGGTCGT
GTGCGGCATCAATGGCTACTGCATAGCCAACGGTCTGGAGCTGGCTCTCA
TGTGCGATCTGCGCGTGATGGAGGAGTCCGCAGTACTGGGATTTTTCAAT
CGACGCTTTGGAGTGCCAATGCTCGATGCCGGCACCATCCGGCTGCCGGC
TATGATTGGATTGTCGCGTGCCCTGGACCTGATACTTACGGGACGTCCGG
TGGGCTCCCAGGAGGCCCACGACATTGGACTGGTCAACAGGATTGTGCCC
ACAGGCACGGCCTTGGGCAATGCCCTGGAGCTGGCCACCTGTCTGGCCAA
GTTCCCGCAACGCGCGCTCATCCACGATCGCAACTCGGTCTACTCGAGCA
CGTTCGAGACCTCAACGTTCCACCAGGCGGTGCAGAATGAGGTGATGTTC
ACGTCCCGTGAAATCATCGAGGACATGCAGAACGGCATCAAATGGTTCAA
CCAGACCTTCAAGCCGGACACCACGCATTCGTGGCTAAAGCGCGACCGCT
CGATGGCCGACTGGGACGATGAGGAAGTGGCTGAGGCTGCAGCGCAGAAG
GAAAAACTAAAACAGGAGCAGGAGGCTGCTCTGGCTGAGGCCGAAAAGCA
AAAGCAGGCTGAAAAGGCGCAGAAAAGGTCGAAGAAGACCGAGGAAAGTG
CGGCTGAAAGTGTCGATAGTAAAGATCCCAAGGATAAGCCAAACGAAAAG
TAGAAGCTTTCTAGACCAT

BS10071.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-RA 1137 CG5844-PA 1..1137 17..1153 5685 100 Plus
CG5611-RC 981 CG5611-PC 449..527 486..564 200 83.5 Plus
CG5611-RA 981 CG5611-PA 449..527 486..564 200 83.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-RA 1355 CG5844-RA 84..1221 16..1153 5690 100 Plus
CG5611-RC 1375 CG5611-RC 470..548 486..564 200 83.5 Plus
CG5611-RA 1096 CG5611-RA 470..548 486..564 200 83.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12434415..12435202 118..905 3940 100 Plus
3R 32079331 3R 12435262..12435509 906..1153 1240 100 Plus
3R 32079331 3R 12434242..12434345 16..119 520 100 Plus
3R 32079331 3R 27635513..27635591 564..486 200 83.5 Minus
Blast to na_te.dros performed on 2014-11-26 22:34:40 has no hits.

BS10071.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:24 Download gff for BS10071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:06 Download gff for BS10071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 74..1217 8..1153 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:36 Download gff for BS10071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 81..1217 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:25 Download gff for BS10071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 74..1217 8..1153 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:51 Download gff for BS10071.complete
Subject Subject Range Query Range Percent Splice Strand
CG5844-RA 85..1221 17..1153 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:51 Download gff for BS10071.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12434243..12434345 17..119 100 -> Plus
3R 12434417..12435202 120..905 100 -> Plus
3R 12435262..12435509 906..1153 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:36 Download gff for BS10071.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8259965..8260067 17..119 100 -> Plus
arm_3R 8260139..8260924 120..905 100 -> Plus
arm_3R 8260984..8261231 906..1153 100   Plus

BS10071.pep Sequence

Translation from 16 to 1152

> BS10071.pep
MLRKFGGLLAQQVGQQARFTAASRTFSSTKALHKDPATQEAEAAPPKNIL
VEKDKNITLIGINRPQQRNAIDSLTASQLCDAFANFEADDTSPVAVLYGV
GGSFCSGFDILEISTDEKEEISVDILMRPEGSVGPTRRQIKKPVVCGING
YCIANGLELALMCDLRVMEESAVLGFFNRRFGVPMLDAGTIRLPAMIGLS
RALDLILTGRPVGSQEAHDIGLVNRIVPTGTALGNALELATCLAKFPQRA
LIHDRNSVYSSTFETSTFHQAVQNEVMFTSREIIEDMQNGIKWFNQTFKP
DTTHSWLKRDRSMADWDDEEVAEAAAQKEKLKQEQEAALAEAEKQKQAEK
AQKRSKKTEESAAESVDSKDPKDKPNEK*

BS10071.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5844-PA 378 CG5844-PA 1..378 1..378 1924 100 Plus
CG5611-PC 326 CG5611-PC 28..325 34..330 832 54.3 Plus
CG5611-PA 326 CG5611-PA 28..325 34..330 832 54.3 Plus
CG6543-PA 295 CG6543-PA 42..269 47..269 259 29.7 Plus
CG6543-PB 295 CG6543-PB 42..269 47..269 259 29.7 Plus