Clone Sequence Records
BS10071.3prime Sequence
962 bp (745 high quality bases) assembled on 2006-04-19
> BS10071.3prime
ATGGTCTAGAAAGCTTCTACTTTTCGTTTGGCTTATCCTTGGGATCTTTA
CTATCGACACTTTCAGCCGCACTTTCCTCGGTCTTCTTCGACCTTTTCTG
CGCCTTTTCAGCCTGCTTTTGCTTTTCGGCCTCAGCCAGAGCAGCCTCCT
GCTCCTGTTTTAGTTTTTCCTTCTGCGCTGCAGCCTCAGCCACTTCCTCA
TCGTCCCAGTCGGCCATCGAGCGGTCGCGCTTTAGCCACGAATGCGTGGT
GTCCGGCTTGAAGGTCTGGTTGAACCATTTGATGCCGTTCTGCATGTCCT
CGATGATTTCACGGGACGTGAACATCACCTCATTCTGCACCGCCTGGTGG
AACGTTGAGGTCTCGAACGTGCTCGAGTAGACCGAGTTGCGATCGTGGAT
GAGCGCGCGTTGCGGGAACTTGGCCAGACAGGTGGCCAGCTCCAGGGCAT
TGCCCAAGGCCGTGCCTGTGGGCACAATCCTGTTGACCAGTCCAATGTCG
TGGGCCTCCTGGGAGCCCACCGGACGTCCCGTAAGTATCAGGTCCAGGGC
ACGCGACAATCCAATCATAGCCGGCAGCCGGATGGTGCCGGCATCGAGCA
TTGGCACTCCAAAGCGTCGATTGAAAAATCCCAGTACTGCGGACTCCTCC
ATCACGCGCAGATCGCACATGAGAGCCAGCTCCAGACCGTTGGCTATGCA
GTAGCCATTGATGCCGCACACGACCGGCTTCTTGATCTGGCGACGCGTGG
GACCCACGGAGCCCTCCGGTCGCATCAGGATGTCCACGCTGATCTCCTCC
TTCTCGTCGGTGCTAATCTCCAGGATGTCGAAGCCGGAGCAAAAGGAGCC
GCCCACGCCGTACAGCACGGCCACCGGCGACGTGTCGTCCGCCTCGAAAT
TGGCGAAGGCGTCGCAAAGCTGCGATGCAGTAAGCGAATCGATGGCATTA
CGCTGCTGCGGG
BS10071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-PA | 1137 | CG5844-RA | 193..1137 | 961..17 | 4725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:15:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-RA | 1355 | CG5844-RA | 277..1221 | 961..17 | 4725 | 100 | Minus |
CG5611-RC | 1375 | CG5611-RC | 470..548 | 684..606 | 200 | 83.5 | Minus |
CG5611-RA | 1096 | CG5611-RA | 470..548 | 684..606 | 200 | 83.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12434506..12435202 | 961..265 | 3485 | 100 | Minus |
3R | 32079331 | 3R | 12435262..12435509 | 264..17 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 27635513..27635591 | 606..684 | 200 | 83.5 | Plus |
Blast to na_te.dros performed on 2015-02-01 10:15:44 has no hits.
BS10071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:29 Download gff for
BS10071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-PA | 192..1137 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:27 Download gff for
BS10071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-PA | 192..1137 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:25:31 Download gff for
BS10071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 272..1217 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:02:39 Download gff for
BS10071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 276..1221 | 17..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:02:39 Download gff for
BS10071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12434505..12435202 | 265..962 | 99 | -> | Minus |
3R | 12435262..12435509 | 17..264 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:25:31 Download gff for
BS10071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8260227..8260924 | 265..962 | 99 | -> | Minus |
arm_3R | 8260984..8261231 | 17..264 | 100 | | Minus |
BS10071.5prime Sequence
979 bp (809 high quality bases) assembled on 2006-04-19
> BS10071.5prime
GAAGTTATCAGTCGACATGCTTCGCAAATTTGGAGGTCTGTTGGCCCAGC
AGGTGGGTCAGCAAGCACGTTTCACCGCCGCGAGTCGCACATTTTCCTCG
ACAAAAGCGCTGCACAAAGATCCAGCGACCCAGGAAGCAGAGGCGGCGCC
ACCGAAGAACATCCTTGTGGAAAAGGATAAGAACATCACGCTGATCGGCA
TCAATCGACCGCAGCAGCGTAATGCCATCGATTCGCTTACTGCATCGCAG
CTTTGCGACGCCTTCGCCAATTTCGAGGCGGACGACACGTCGCCGGTGGC
CGTGCTGTACGGCGTGGGCGGCTCCTTTTGCTCCGGCTTCGACATCCTGG
AGATTAGCACCGACGAGAAGGAGGAGATCAGCGTGGACATCCTGATGCGA
CCGGAGGGCTCCGTGGGTCCCACGCGTCGCCAGATCAAGAAGCCGGTCGT
GTGCGGCATCAATGGCTACTGCATAGCCAACGGTCTGGAGCTGGCTCTCA
TGTGCGATCTGCGCGTGATGGAGGAGTCCGCAGTACTGGGATTTTTCAAT
CGACGCTTTGGAGTGCCAATGCTCGATGCCGGCACCATCCGGCTGCCGGC
TATGATTGGATTGTCGCGTGCCCTGGACCTGATACTTACGGGACGTCCGG
TGGGCTCCCAGGAGGCCCACGACATTGGACTGGTCAACAGGATTGTGCCC
ACAGGCACGGCCTTGGGCAATGCCCTGGAGCTGGCCACCTGTCTGGCCAA
GTTCCCGCAACGCGCGCTCATCCACGATCGCAACTCGGTCTACTCGAGCA
CGTTCGAGACCTNCACGTTCCACCAGGCGGTGCAGAATGAGGTGATGTTC
ACGTCCCGTGAAATCATCGAGGACATGCAGAACGGCATCAAATGGTTCAA
CCAGACTTCAAGCCGGGACACACGCATTCGTGGCTAAAGCGCGACCGCTC
GATGGCCGACTGGAACGATGAAGAAGTGG
BS10071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-PA | 1137 | CG5844-RA | 1..890 | 17..906 | 4406 | 99.7 | Plus |
CG5844-PA | 1137 | CG5844-RA | 906..964 | 921..979 | 245 | 96.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-RA | 1355 | CG5844-RA | 84..1048 | 16..979 | 4699 | 99.3 | Plus |
CG5611-RC | 1375 | CG5611-RC | 470..548 | 486..564 | 200 | 83.5 | Plus |
CG5611-RA | 1096 | CG5611-RA | 470..548 | 486..564 | 200 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12434415..12435202 | 118..905 | 3914 | 99.7 | Plus |
3R | 32079331 | 3R | 12434242..12434345 | 16..119 | 520 | 100 | Plus |
3R | 32079331 | 3R | 12435259..12435336 | 902..979 | 285 | 91 | Plus |
3R | 32079331 | 3R | 27635513..27635591 | 564..486 | 200 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:26:31 has no hits.
BS10071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:30 Download gff for
BS10071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-PA | 1..964 | 17..979 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:28 Download gff for
BS10071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-PA | 1..964 | 17..979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:37:05 Download gff for
BS10071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 74..1044 | 8..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:07:52 Download gff for
BS10071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 78..1048 | 8..979 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:07:52 Download gff for
BS10071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12434242..12434345 | 16..119 | 100 | -> | Plus |
3R | 12434417..12435202 | 120..905 | 99 | -> | Plus |
3R | 12435262..12435336 | 906..979 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:37:05 Download gff for
BS10071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8259964..8260067 | 16..119 | 100 | -> | Plus |
arm_3R | 8260139..8260924 | 120..905 | 99 | -> | Plus |
arm_3R | 8260984..8261058 | 906..979 | 93 | | Plus |
BS10071.complete Sequence
1169 bp (1169 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636550
> BS10071.complete
GAAGTTATCAGTCGACATGCTTCGCAAATTTGGAGGTCTGTTGGCCCAGC
AGGTGGGTCAGCAAGCACGTTTCACCGCCGCGAGTCGCACATTTTCCTCG
ACAAAAGCGCTGCACAAAGATCCAGCGACCCAGGAAGCAGAGGCGGCGCC
ACCGAAGAACATCCTTGTGGAAAAGGATAAGAACATCACGCTGATCGGCA
TCAATCGACCGCAGCAGCGTAATGCCATCGATTCGCTTACTGCATCGCAG
CTTTGCGACGCCTTCGCCAATTTCGAGGCGGACGACACGTCGCCGGTGGC
CGTGCTGTACGGCGTGGGCGGCTCCTTTTGCTCCGGCTTCGACATCCTGG
AGATTAGCACCGACGAGAAGGAGGAGATCAGCGTGGACATCCTGATGCGA
CCGGAGGGCTCCGTGGGTCCCACGCGTCGCCAGATCAAGAAGCCGGTCGT
GTGCGGCATCAATGGCTACTGCATAGCCAACGGTCTGGAGCTGGCTCTCA
TGTGCGATCTGCGCGTGATGGAGGAGTCCGCAGTACTGGGATTTTTCAAT
CGACGCTTTGGAGTGCCAATGCTCGATGCCGGCACCATCCGGCTGCCGGC
TATGATTGGATTGTCGCGTGCCCTGGACCTGATACTTACGGGACGTCCGG
TGGGCTCCCAGGAGGCCCACGACATTGGACTGGTCAACAGGATTGTGCCC
ACAGGCACGGCCTTGGGCAATGCCCTGGAGCTGGCCACCTGTCTGGCCAA
GTTCCCGCAACGCGCGCTCATCCACGATCGCAACTCGGTCTACTCGAGCA
CGTTCGAGACCTCAACGTTCCACCAGGCGGTGCAGAATGAGGTGATGTTC
ACGTCCCGTGAAATCATCGAGGACATGCAGAACGGCATCAAATGGTTCAA
CCAGACCTTCAAGCCGGACACCACGCATTCGTGGCTAAAGCGCGACCGCT
CGATGGCCGACTGGGACGATGAGGAAGTGGCTGAGGCTGCAGCGCAGAAG
GAAAAACTAAAACAGGAGCAGGAGGCTGCTCTGGCTGAGGCCGAAAAGCA
AAAGCAGGCTGAAAAGGCGCAGAAAAGGTCGAAGAAGACCGAGGAAAGTG
CGGCTGAAAGTGTCGATAGTAAAGATCCCAAGGATAAGCCAAACGAAAAG
TAGAAGCTTTCTAGACCAT
BS10071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-RA | 1137 | CG5844-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
CG5611-RC | 981 | CG5611-PC | 449..527 | 486..564 | 200 | 83.5 | Plus |
CG5611-RA | 981 | CG5611-PA | 449..527 | 486..564 | 200 | 83.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-RA | 1355 | CG5844-RA | 84..1221 | 16..1153 | 5690 | 100 | Plus |
CG5611-RC | 1375 | CG5611-RC | 470..548 | 486..564 | 200 | 83.5 | Plus |
CG5611-RA | 1096 | CG5611-RA | 470..548 | 486..564 | 200 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12434415..12435202 | 118..905 | 3940 | 100 | Plus |
3R | 32079331 | 3R | 12435262..12435509 | 906..1153 | 1240 | 100 | Plus |
3R | 32079331 | 3R | 12434242..12434345 | 16..119 | 520 | 100 | Plus |
3R | 32079331 | 3R | 27635513..27635591 | 564..486 | 200 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:34:40 has no hits.
BS10071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:24 Download gff for
BS10071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 1..1137 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:06 Download gff for
BS10071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 74..1217 | 8..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:36 Download gff for
BS10071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 81..1217 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:25 Download gff for
BS10071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 74..1217 | 8..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:51 Download gff for
BS10071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5844-RA | 85..1221 | 17..1153 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:51 Download gff for
BS10071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12434243..12434345 | 17..119 | 100 | -> | Plus |
3R | 12434417..12435202 | 120..905 | 100 | -> | Plus |
3R | 12435262..12435509 | 906..1153 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:36 Download gff for
BS10071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8259965..8260067 | 17..119 | 100 | -> | Plus |
arm_3R | 8260139..8260924 | 120..905 | 100 | -> | Plus |
arm_3R | 8260984..8261231 | 906..1153 | 100 | | Plus |
BS10071.pep Sequence
Translation from 16 to 1152
> BS10071.pep
MLRKFGGLLAQQVGQQARFTAASRTFSSTKALHKDPATQEAEAAPPKNIL
VEKDKNITLIGINRPQQRNAIDSLTASQLCDAFANFEADDTSPVAVLYGV
GGSFCSGFDILEISTDEKEEISVDILMRPEGSVGPTRRQIKKPVVCGING
YCIANGLELALMCDLRVMEESAVLGFFNRRFGVPMLDAGTIRLPAMIGLS
RALDLILTGRPVGSQEAHDIGLVNRIVPTGTALGNALELATCLAKFPQRA
LIHDRNSVYSSTFETSTFHQAVQNEVMFTSREIIEDMQNGIKWFNQTFKP
DTTHSWLKRDRSMADWDDEEVAEAAAQKEKLKQEQEAALAEAEKQKQAEK
AQKRSKKTEESAAESVDSKDPKDKPNEK*
BS10071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5844-PA | 378 | CG5844-PA | 1..378 | 1..378 | 1924 | 100 | Plus |
CG5611-PC | 326 | CG5611-PC | 28..325 | 34..330 | 832 | 54.3 | Plus |
CG5611-PA | 326 | CG5611-PA | 28..325 | 34..330 | 832 | 54.3 | Plus |
CG6543-PA | 295 | CG6543-PA | 42..269 | 47..269 | 259 | 29.7 | Plus |
CG6543-PB | 295 | CG6543-PB | 42..269 | 47..269 | 259 | 29.7 | Plus |