Clone BS10073 Report

Search the DGRC for BS10073

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG9328-RB
Protein status:BS10073.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10073.3prime Sequence

462 bp (461 high quality bases) assembled on 2006-04-19

> BS10073.3prime
ATGGTCTAGAAAGCTTTTAATTGTTGGCGTGCGCCGTGCGCAGCTTGGCC
CGCACGTTCAGATACTCGGGATTCACGTACTGCCGCTCCTCGGCGTCCTC
CTGATCCTGCTTCTGAGCCGCCGCCTCATGCTTCTGCGCCCGCTCCATGA
TCACGCGCCCGAGTTCTCCTTTCAGTCCTGGAATCCCGCCGACAATGTCC
GCATCCGGCGAATGTTGCTCGGCCGCGGCATGCCGCTCCTTTTGCTTGTC
GTAGGCACGTTGCAATTCTGATTTCTGGTTCAGCACGCTCTTTCCCACTC
TGGCATTGAACTTGAGCTCCCGGTGCAACTCCTTGCGATCGATGTTCTCC
ATGCAGGGATTGATGAGCTTCTTAGGCAGGATCAGCCCGTCGGAGTCCGT
CTGGACGCCAGTGGGTGTGGCCGGCGGGGAGCTGGTCATGGACATCATGT
CGACTGATAACT

BS10073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-PB 432 CG9328-RB 1..432 448..17 2085 99.3 Minus
CG9328-PA 543 CG9328-RA 112..543 448..17 2085 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-RA 1501 CG9328-RA 451..882 448..17 2115 99.3 Minus
CG9328-RB 1600 CG9328-RB 851..1282 448..17 2115 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20813433..20813712 296..17 1355 98.9 Minus
2L 23513712 2L 20813206..20813358 448..296 765 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:55:37 has no hits.

BS10073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:34 Download gff for BS10073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-PB 1..432 17..448 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:32 Download gff for BS10073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-PA 112..543 17..448 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:45:35 Download gff for BS10073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1287 13..448 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:24 Download gff for BS10073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1287 13..448 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:24 Download gff for BS10073.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20813206..20813357 297..448 100 -> Minus
2L 20813433..20813717 13..296 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:45:35 Download gff for BS10073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20813206..20813357 297..448 100 -> Minus
arm_2L 20813433..20813717 13..296 98   Minus

BS10073.5prime Sequence

462 bp (461 high quality bases) assembled on 2006-04-19

> BS10073.5prime
GAAGTTATCAGTCGACATGATGTCCATGACCAGCTCCCCGCCGGCCACAC
CCACTGGCGTCCAGACGGACTCCGACGGGCTGATCCTGCCTAAGAAGCTC
ATCAATCCCTGCATGGAGAACATCGATCGCAAGGAGTTGCACCGGGAGCT
CAAGTTCAATGCCAGAGTGGGAAAGAGCGTGCTGAACCAGAAATCAGAAT
TGCAACGTGCCTACGACAAGCAAAAGGAGCGGCATGCCGCGGCCGAGCAA
CATTCGCCGGATGCGGACATTGTCGGCGGGATTCCAGGACTGAAAGGAGA
ACTCGGGCGCGTGATCATGGAGCGGGCGCAGAAGCATGAGGCGGCGGCTC
AGAAGCAGGATCAGGAGGACGCCGAGGAGCGGCAGTACGTGAATCCCGAG
TATCTGAACGTGCGGGCCAAGCTGCGCACGGCGCACGCCAACAATTAAAA
GCTTTCTAGACC

BS10073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-PB 432 CG9328-RB 1..432 17..448 2085 99.3 Plus
CG9328-PA 543 CG9328-RA 112..543 17..448 2085 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-RA 1501 CG9328-RA 451..882 17..448 2115 99.3 Plus
CG9328-RB 1600 CG9328-RB 851..1282 17..448 2115 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20813433..20813712 169..448 1355 98.9 Plus
2L 23513712 2L 20813206..20813358 17..169 765 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:46:56 has no hits.

BS10073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:35 Download gff for BS10073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-PB 1..432 17..448 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:33 Download gff for BS10073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-PA 112..543 17..448 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:39 Download gff for BS10073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1287 17..452 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:33 Download gff for BS10073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1287 17..452 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:33 Download gff for BS10073.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20813206..20813357 17..168 100 -> Plus
2L 20813433..20813717 169..452 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:39 Download gff for BS10073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20813206..20813357 17..168 100 -> Plus
arm_2L 20813433..20813717 169..452 98   Plus

BS10073.complete Sequence

464 bp (464 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636551

> BS10073.complete
GAAGTTATCAGTCGACATGATGTCCATGACCAGCTCCCCGCCGGCCACAC
CCACTGGCGTCCAGACGGACTCCGACGGGCTGATCCTGCCTAAGAAGCTC
ATCAATCCCTGCATGGAGAACATCGATCGCAAGGAGTTGCACCGGGAGCT
CAAGTTCAATGCCAGAGTGGGAAAGAGCGTGCTGAACCAGAAATCAGAAT
TGCAACGTGCCTACGACAAGCAAAAGGAGCGGCATGCCGCGGCCGAGCAA
CATTCGCCGGATGCGGACATTGTCGGCGGGATTCCAGGACTGAAAGGAGA
ACTCGGGCGCGTGATCATGGAGCGGGCGCAGAAGCATGAGGCGGCGGCTC
AGAAGCAGGATCAGGAGGACGCCGAGGAGCGGCAGTACGTGAATCCCGAG
TATCTGAACGTGCGGGCCAAGCTGCGCACGGCGCACGCCAACAATTAAAA
GCTTTCTAGACCAT

BS10073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-RA 543 CG9328-PA 112..543 17..448 2115 99.3 Plus
CG9328-RB 432 CG9328-PB 1..432 17..448 2115 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-RA 1501 CG9328-RA 451..882 17..448 2115 99.3 Plus
CG9328-RB 1600 CG9328-RB 851..1282 17..448 2115 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20813433..20813712 169..448 1355 98.9 Plus
2L 23513712 2L 20813206..20813358 17..169 765 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:52:29 has no hits.

BS10073.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:26 Download gff for BS10073.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RA 112..543 17..448 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:33 Download gff for BS10073.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 835..1271 17..452 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:20 Download gff for BS10073.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1280 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:26 Download gff for BS10073.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 835..1271 17..452 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:49 Download gff for BS10073.complete
Subject Subject Range Query Range Percent Splice Strand
CG9328-RB 851..1280 17..446 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:49 Download gff for BS10073.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20813206..20813357 17..168 100 -> Plus
2L 20813433..20813710 169..446 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:20 Download gff for BS10073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20813206..20813357 17..168 100 -> Plus
arm_2L 20813433..20813710 169..446 98   Plus

BS10073.pep Sequence

Translation from 16 to 447

> BS10073.pep
MMSMTSSPPATPTGVQTDSDGLILPKKLINPCMENIDRKELHRELKFNAR
VGKSVLNQKSELQRAYDKQKERHAAAEQHSPDADIVGGIPGLKGELGRVI
MERAQKHEAAAQKQDQEDAEERQYVNPEYLNVRAKLRTAHANN*

BS10073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9328-PB 143 CG9328-PB 1..143 1..143 735 100 Plus
CG9328-PA 180 CG9328-PA 38..180 1..143 735 100 Plus