Clone Sequence Records
BS10073.3prime Sequence
462 bp (461 high quality bases) assembled on 2006-04-19
> BS10073.3prime
ATGGTCTAGAAAGCTTTTAATTGTTGGCGTGCGCCGTGCGCAGCTTGGCC
CGCACGTTCAGATACTCGGGATTCACGTACTGCCGCTCCTCGGCGTCCTC
CTGATCCTGCTTCTGAGCCGCCGCCTCATGCTTCTGCGCCCGCTCCATGA
TCACGCGCCCGAGTTCTCCTTTCAGTCCTGGAATCCCGCCGACAATGTCC
GCATCCGGCGAATGTTGCTCGGCCGCGGCATGCCGCTCCTTTTGCTTGTC
GTAGGCACGTTGCAATTCTGATTTCTGGTTCAGCACGCTCTTTCCCACTC
TGGCATTGAACTTGAGCTCCCGGTGCAACTCCTTGCGATCGATGTTCTCC
ATGCAGGGATTGATGAGCTTCTTAGGCAGGATCAGCCCGTCGGAGTCCGT
CTGGACGCCAGTGGGTGTGGCCGGCGGGGAGCTGGTCATGGACATCATGT
CGACTGATAACT
BS10073.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-PB | 432 | CG9328-RB | 1..432 | 448..17 | 2085 | 99.3 | Minus |
CG9328-PA | 543 | CG9328-RA | 112..543 | 448..17 | 2085 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-RA | 1501 | CG9328-RA | 451..882 | 448..17 | 2115 | 99.3 | Minus |
CG9328-RB | 1600 | CG9328-RB | 851..1282 | 448..17 | 2115 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20813433..20813712 | 296..17 | 1355 | 98.9 | Minus |
2L | 23513712 | 2L | 20813206..20813358 | 448..296 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:55:37 has no hits.
BS10073.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:34 Download gff for
BS10073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-PB | 1..432 | 17..448 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:32 Download gff for
BS10073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-PA | 112..543 | 17..448 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:45:35 Download gff for
BS10073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1287 | 13..448 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:24 Download gff for
BS10073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1287 | 13..448 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:24 Download gff for
BS10073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20813206..20813357 | 297..448 | 100 | -> | Minus |
2L | 20813433..20813717 | 13..296 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:45:35 Download gff for
BS10073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20813206..20813357 | 297..448 | 100 | -> | Minus |
arm_2L | 20813433..20813717 | 13..296 | 98 | | Minus |
BS10073.5prime Sequence
462 bp (461 high quality bases) assembled on 2006-04-19
> BS10073.5prime
GAAGTTATCAGTCGACATGATGTCCATGACCAGCTCCCCGCCGGCCACAC
CCACTGGCGTCCAGACGGACTCCGACGGGCTGATCCTGCCTAAGAAGCTC
ATCAATCCCTGCATGGAGAACATCGATCGCAAGGAGTTGCACCGGGAGCT
CAAGTTCAATGCCAGAGTGGGAAAGAGCGTGCTGAACCAGAAATCAGAAT
TGCAACGTGCCTACGACAAGCAAAAGGAGCGGCATGCCGCGGCCGAGCAA
CATTCGCCGGATGCGGACATTGTCGGCGGGATTCCAGGACTGAAAGGAGA
ACTCGGGCGCGTGATCATGGAGCGGGCGCAGAAGCATGAGGCGGCGGCTC
AGAAGCAGGATCAGGAGGACGCCGAGGAGCGGCAGTACGTGAATCCCGAG
TATCTGAACGTGCGGGCCAAGCTGCGCACGGCGCACGCCAACAATTAAAA
GCTTTCTAGACC
BS10073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-PB | 432 | CG9328-RB | 1..432 | 17..448 | 2085 | 99.3 | Plus |
CG9328-PA | 543 | CG9328-RA | 112..543 | 17..448 | 2085 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-RA | 1501 | CG9328-RA | 451..882 | 17..448 | 2115 | 99.3 | Plus |
CG9328-RB | 1600 | CG9328-RB | 851..1282 | 17..448 | 2115 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20813433..20813712 | 169..448 | 1355 | 98.9 | Plus |
2L | 23513712 | 2L | 20813206..20813358 | 17..169 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:46:56 has no hits.
BS10073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:35 Download gff for
BS10073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-PB | 1..432 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:33 Download gff for
BS10073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-PA | 112..543 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:39 Download gff for
BS10073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1287 | 17..452 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:17:33 Download gff for
BS10073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1287 | 17..452 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:17:33 Download gff for
BS10073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20813206..20813357 | 17..168 | 100 | -> | Plus |
2L | 20813433..20813717 | 169..452 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:39 Download gff for
BS10073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20813206..20813357 | 17..168 | 100 | -> | Plus |
arm_2L | 20813433..20813717 | 169..452 | 98 | | Plus |
BS10073.complete Sequence
464 bp (464 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636551
> BS10073.complete
GAAGTTATCAGTCGACATGATGTCCATGACCAGCTCCCCGCCGGCCACAC
CCACTGGCGTCCAGACGGACTCCGACGGGCTGATCCTGCCTAAGAAGCTC
ATCAATCCCTGCATGGAGAACATCGATCGCAAGGAGTTGCACCGGGAGCT
CAAGTTCAATGCCAGAGTGGGAAAGAGCGTGCTGAACCAGAAATCAGAAT
TGCAACGTGCCTACGACAAGCAAAAGGAGCGGCATGCCGCGGCCGAGCAA
CATTCGCCGGATGCGGACATTGTCGGCGGGATTCCAGGACTGAAAGGAGA
ACTCGGGCGCGTGATCATGGAGCGGGCGCAGAAGCATGAGGCGGCGGCTC
AGAAGCAGGATCAGGAGGACGCCGAGGAGCGGCAGTACGTGAATCCCGAG
TATCTGAACGTGCGGGCCAAGCTGCGCACGGCGCACGCCAACAATTAAAA
GCTTTCTAGACCAT
BS10073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-RA | 543 | CG9328-PA | 112..543 | 17..448 | 2115 | 99.3 | Plus |
CG9328-RB | 432 | CG9328-PB | 1..432 | 17..448 | 2115 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-RA | 1501 | CG9328-RA | 451..882 | 17..448 | 2115 | 99.3 | Plus |
CG9328-RB | 1600 | CG9328-RB | 851..1282 | 17..448 | 2115 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20813433..20813712 | 169..448 | 1355 | 98.9 | Plus |
2L | 23513712 | 2L | 20813206..20813358 | 17..169 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:52:29 has no hits.
BS10073.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:26 Download gff for
BS10073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RA | 112..543 | 17..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:33 Download gff for
BS10073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 835..1271 | 17..452 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:20 Download gff for
BS10073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1280 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:26 Download gff for
BS10073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 835..1271 | 17..452 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:49 Download gff for
BS10073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9328-RB | 851..1280 | 17..446 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:49 Download gff for
BS10073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20813206..20813357 | 17..168 | 100 | -> | Plus |
2L | 20813433..20813710 | 169..446 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:20 Download gff for
BS10073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20813206..20813357 | 17..168 | 100 | -> | Plus |
arm_2L | 20813433..20813710 | 169..446 | 98 | | Plus |
BS10073.pep Sequence
Translation from 16 to 447
> BS10073.pep
MMSMTSSPPATPTGVQTDSDGLILPKKLINPCMENIDRKELHRELKFNAR
VGKSVLNQKSELQRAYDKQKERHAAAEQHSPDADIVGGIPGLKGELGRVI
MERAQKHEAAAQKQDQEDAEERQYVNPEYLNVRAKLRTAHANN*
BS10073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9328-PB | 143 | CG9328-PB | 1..143 | 1..143 | 735 | 100 | Plus |
CG9328-PA | 180 | CG9328-PA | 38..180 | 1..143 | 735 | 100 | Plus |