Clone BS10074 Report

Search the DGRC for BS10074

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG3689-RB
Protein status:BS10074.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10074.5prime Sequence

642 bp (641 high quality bases) assembled on 2006-04-19

> BS10074.5prime
GAAGTTATCAGTCGACATGGCGTCCTCGCAAGTCTCAAACAAATCGGGCT
CCGGTTGGCCGCGCCGCGGAAGCCAAGGCCAAGCGGATGCAGCCAGCAGC
AATAACAACGGTACCCAGAAGTACACCAACCAGGCGCTAACCATCAATCG
CACCATCAACTTATACCCCCTTACGAACTACACATTCGGCACCAAGGAGC
CGCTCTTTGAGAAGGATCCGTCGGTGCCATCCCGATTCCAGCGGATGCGC
GAGGAATTCGACCGGATCGGAATGCGGCGCTCCGTCGAGGGAGTGCTTCT
GGTCCACGAGCACGGACTGCCACATGTCTTGCTCCTGCAGCTGGGCACCA
CGTTCTTCAAATTGCCCGGTGGCGAGCTAAACGCCGGCGAGGATGAGGTC
GAGGGCCTCAAGAGATTGCTATCCGAGACGCTGGGTCGTCAGGACGGCGT
AAAGCAGGAGTGGATTGTTGAGGACACGATTGGGAACTGGTGGCGGCCGA
ACTTTGAGCCACCGCAATATCCATACATTCCGCCGCACATCACCAAGCCC
AAGGAGCACAAGCGGCTTTTCCTCGTCCAGCTACATGAAAAGGATACGGA
CGGGAACGCCAGTTACGATGTACCCTGAAAGCTTTCTAGACC

BS10074.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-PB 612 CG3689-RB 1..612 17..628 3060 100 Plus
CG3689-PC 714 CG3689-RC 1..577 17..593 2885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-RB 2225 CG3689-RB 239..850 17..628 3060 100 Plus
CG3689-RC 1177 CG3689-RC 239..815 17..593 2885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9411479..9411743 163..427 1325 100 Plus
3L 28110227 3L 9411815..9411982 426..593 840 100 Plus
3L 28110227 3L 9411276..9411421 17..162 730 100 Plus
3L 28110227 3L 9412154..9412189 593..628 180 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:17:34 has no hits.

BS10074.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:37 Download gff for BS10074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-PB 1..612 17..628 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:36 Download gff for BS10074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-PB 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:00:06 Download gff for BS10074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..852 17..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:35:21 Download gff for BS10074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..852 17..632 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:35:21 Download gff for BS10074.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9411276..9411421 17..162 100 -> Plus
3L 9411479..9411743 163..427 100 -> Plus
3L 9411817..9411982 428..593 100 -> Plus
3L 9412155..9412191 594..632 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:00:06 Download gff for BS10074.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9404376..9404521 17..162 100 -> Plus
arm_3L 9404579..9404843 163..427 100 -> Plus
arm_3L 9404917..9405082 428..593 100 -> Plus
arm_3L 9405255..9405291 594..632 94   Plus

BS10074.3prime Sequence

642 bp (641 high quality bases) assembled on 2006-04-19

> BS10074.3prime
ATGGTCTAGAAAGCTTTCAGGGTACATCGTAACTGGCGTTCCCGTCCGTA
TCCTTTTCATGTAGCTGGACGAGGAAAAGCCGCTTGTGCTCCTTGGGCTT
GGTGATGTGCGGCGGAATGTATGGATATTGCGGTGGCTCAAAGTTCGGCC
GCCACCAGTTCCCAATCGTGTCCTCAACAATCCACTCCTGCTTTACGCCG
TCCTGACGACCCAGCGTCTCGGATAGCAATCTCTTGAGGCCCTCGACCTC
ATCCTCGCCGGCGTTTAGCTCGCCACCGGGCAATTTGAAGAACGTGGTGC
CCAGCTGCAGGAGCAAGACATGTGGCAGTCCGTGCTCGTGGACCAGAAGC
ACTCCCTCGACGGAGCGCCGCATTCCGATCCGGTCGAATTCCTCGCGCAT
CCGCTGGAATCGGGATGGCACCGACGGATCCTTCTCAAAGAGCGGCTCCT
TGGTGCCGAATGTGTAGTTCGTAAGGGGGTATAAGTTGATGGTGCGATTG
ATGGTTAGCGCCTGGTTGGTGTACTTCTGGGTACCGTTGTTATTGCTGCT
GGCTGCATCCGCTTGGCCTTGGCTTCCGCGGCGCGGCCAACCGGAGCCCG
ATTTGTTTGAGACTTGCGAGGACGCCATGTCGACTGATAACT

BS10074.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-PB 612 CG3689-RB 1..612 628..17 3060 100 Minus
CG3689-PC 714 CG3689-RC 1..577 628..52 2885 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-RB 2225 CG3689-RB 239..850 628..17 3060 100 Minus
CG3689-RC 1177 CG3689-RC 239..815 628..52 2885 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9411479..9411743 482..218 1325 100 Minus
3L 28110227 3L 9411815..9411982 219..52 840 100 Minus
3L 28110227 3L 9411276..9411421 628..483 730 100 Minus
3L 28110227 3L 9412154..9412189 52..17 180 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:14:00 has no hits.

BS10074.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:36 Download gff for BS10074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-PB 1..612 17..628 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:34 Download gff for BS10074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-PB 1..612 17..628 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:10 Download gff for BS10074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..852 13..628 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:48:32 Download gff for BS10074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..852 13..628 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:48:32 Download gff for BS10074.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9411276..9411421 483..628 100 -> Minus
3L 9411479..9411743 218..482 100 -> Minus
3L 9411817..9411982 52..217 100 -> Minus
3L 9412155..9412191 13..51 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:10 Download gff for BS10074.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9405255..9405291 13..51 94   Minus
arm_3L 9404376..9404521 483..628 100 -> Minus
arm_3L 9404579..9404843 218..482 100 -> Minus
arm_3L 9404917..9405082 52..217 100 -> Minus

BS10074.complete Sequence

644 bp (644 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636552

> BS10074.complete
GAAGTTATCAGTCGACATGGCGTCCTCGCAAGTCTCAAACAAATCGGGCT
CCGGTTGGCCGCGCCGCGGAAGCCAAGGCCAAGCGGATGCAGCCAGCAGC
AATAACAACGGTACCCAGAAGTACACCAACCAGGCGCTAACCATCAATCG
CACCATCAACTTATACCCCCTTACGAACTACACATTCGGCACCAAGGAGC
CGCTCTTTGAGAAGGATCCGTCGGTGCCATCCCGATTCCAGCGGATGCGC
GAGGAATTCGACCGGATCGGAATGCGGCGCTCCGTCGAGGGAGTGCTTCT
GGTCCACGAGCACGGACTGCCACATGTCTTGCTCCTGCAGCTGGGCACCA
CGTTCTTCAAATTGCCCGGTGGCGAGCTAAACGCCGGCGAGGATGAGGTC
GAGGGCCTCAAGAGATTGCTATCCGAGACGCTGGGTCGTCAGGACGGCGT
AAAGCAGGAGTGGATTGTTGAGGACACGATTGGGAACTGGTGGCGGCCGA
ACTTTGAGCCACCGCAATATCCATACATTCCGCCGCACATCACCAAGCCC
AAGGAGCACAAGCGGCTTTTCCTCGTCCAGCTACATGAAAAGGATACGGA
CGGGAACGCCAGTTACGATGTACCCTGAAAGCTTTCTAGACCAT

BS10074.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-RB 612 CG3689-PB 1..612 17..628 3060 100 Plus
CG3689-RC 714 CG3689-PC 1..577 17..593 2885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-RB 2225 CG3689-RB 239..850 17..628 3060 100 Plus
CG3689-RC 1177 CG3689-RC 239..815 17..593 2885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9411479..9411743 163..427 1325 100 Plus
3L 28110227 3L 9411815..9411982 426..593 840 100 Plus
3L 28110227 3L 9411276..9411421 17..162 730 100 Plus
3L 28110227 3L 9412154..9412189 593..628 180 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:52:28 has no hits.

BS10074.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:55 Download gff for BS10074.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:50 Download gff for BS10074.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 218..831 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:59 Download gff for BS10074.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..849 17..627 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:56 Download gff for BS10074.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 218..831 17..632 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:08 Download gff for BS10074.complete
Subject Subject Range Query Range Percent Splice Strand
CG3689-RB 239..849 17..627 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:08 Download gff for BS10074.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9411276..9411421 17..162 100 -> Plus
3L 9411817..9411982 428..593 100 -> Plus
3L 9412155..9412188 594..627 100   Plus
3L 9411479..9411743 163..427 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:59 Download gff for BS10074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9404376..9404521 17..162 100 -> Plus
arm_3L 9404579..9404843 163..427 100 -> Plus
arm_3L 9404917..9405082 428..593 100 -> Plus
arm_3L 9405255..9405288 594..627 100   Plus

BS10074.pep Sequence

Translation from 16 to 627

> BS10074.pep
MASSQVSNKSGSGWPRRGSQGQADAASSNNNGTQKYTNQALTINRTINLY
PLTNYTFGTKEPLFEKDPSVPSRFQRMREEFDRIGMRRSVEGVLLVHEHG
LPHVLLLQLGTTFFKLPGGELNAGEDEVEGLKRLLSETLGRQDGVKQEWI
VEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLHEKDTDGNASY
DVP*

BS10074.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3689-PB 203 CG3689-PB 1..203 1..203 1088 100 Plus
CG3689-PC 237 CG3689-PC 1..192 1..192 1027 100 Plus