Clone Sequence Records
BS10074.5prime Sequence
642 bp (641 high quality bases) assembled on 2006-04-19
> BS10074.5prime
GAAGTTATCAGTCGACATGGCGTCCTCGCAAGTCTCAAACAAATCGGGCT
CCGGTTGGCCGCGCCGCGGAAGCCAAGGCCAAGCGGATGCAGCCAGCAGC
AATAACAACGGTACCCAGAAGTACACCAACCAGGCGCTAACCATCAATCG
CACCATCAACTTATACCCCCTTACGAACTACACATTCGGCACCAAGGAGC
CGCTCTTTGAGAAGGATCCGTCGGTGCCATCCCGATTCCAGCGGATGCGC
GAGGAATTCGACCGGATCGGAATGCGGCGCTCCGTCGAGGGAGTGCTTCT
GGTCCACGAGCACGGACTGCCACATGTCTTGCTCCTGCAGCTGGGCACCA
CGTTCTTCAAATTGCCCGGTGGCGAGCTAAACGCCGGCGAGGATGAGGTC
GAGGGCCTCAAGAGATTGCTATCCGAGACGCTGGGTCGTCAGGACGGCGT
AAAGCAGGAGTGGATTGTTGAGGACACGATTGGGAACTGGTGGCGGCCGA
ACTTTGAGCCACCGCAATATCCATACATTCCGCCGCACATCACCAAGCCC
AAGGAGCACAAGCGGCTTTTCCTCGTCCAGCTACATGAAAAGGATACGGA
CGGGAACGCCAGTTACGATGTACCCTGAAAGCTTTCTAGACC
BS10074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-PB | 612 | CG3689-RB | 1..612 | 17..628 | 3060 | 100 | Plus |
CG3689-PC | 714 | CG3689-RC | 1..577 | 17..593 | 2885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-RB | 2225 | CG3689-RB | 239..850 | 17..628 | 3060 | 100 | Plus |
CG3689-RC | 1177 | CG3689-RC | 239..815 | 17..593 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9411479..9411743 | 163..427 | 1325 | 100 | Plus |
3L | 28110227 | 3L | 9411815..9411982 | 426..593 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9411276..9411421 | 17..162 | 730 | 100 | Plus |
3L | 28110227 | 3L | 9412154..9412189 | 593..628 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:17:34 has no hits.
BS10074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:37 Download gff for
BS10074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-PB | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:36 Download gff for
BS10074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-PB | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:00:06 Download gff for
BS10074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..852 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:35:21 Download gff for
BS10074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..852 | 17..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:35:21 Download gff for
BS10074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9411276..9411421 | 17..162 | 100 | -> | Plus |
3L | 9411479..9411743 | 163..427 | 100 | -> | Plus |
3L | 9411817..9411982 | 428..593 | 100 | -> | Plus |
3L | 9412155..9412191 | 594..632 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:00:06 Download gff for
BS10074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9404376..9404521 | 17..162 | 100 | -> | Plus |
arm_3L | 9404579..9404843 | 163..427 | 100 | -> | Plus |
arm_3L | 9404917..9405082 | 428..593 | 100 | -> | Plus |
arm_3L | 9405255..9405291 | 594..632 | 94 | | Plus |
BS10074.3prime Sequence
642 bp (641 high quality bases) assembled on 2006-04-19
> BS10074.3prime
ATGGTCTAGAAAGCTTTCAGGGTACATCGTAACTGGCGTTCCCGTCCGTA
TCCTTTTCATGTAGCTGGACGAGGAAAAGCCGCTTGTGCTCCTTGGGCTT
GGTGATGTGCGGCGGAATGTATGGATATTGCGGTGGCTCAAAGTTCGGCC
GCCACCAGTTCCCAATCGTGTCCTCAACAATCCACTCCTGCTTTACGCCG
TCCTGACGACCCAGCGTCTCGGATAGCAATCTCTTGAGGCCCTCGACCTC
ATCCTCGCCGGCGTTTAGCTCGCCACCGGGCAATTTGAAGAACGTGGTGC
CCAGCTGCAGGAGCAAGACATGTGGCAGTCCGTGCTCGTGGACCAGAAGC
ACTCCCTCGACGGAGCGCCGCATTCCGATCCGGTCGAATTCCTCGCGCAT
CCGCTGGAATCGGGATGGCACCGACGGATCCTTCTCAAAGAGCGGCTCCT
TGGTGCCGAATGTGTAGTTCGTAAGGGGGTATAAGTTGATGGTGCGATTG
ATGGTTAGCGCCTGGTTGGTGTACTTCTGGGTACCGTTGTTATTGCTGCT
GGCTGCATCCGCTTGGCCTTGGCTTCCGCGGCGCGGCCAACCGGAGCCCG
ATTTGTTTGAGACTTGCGAGGACGCCATGTCGACTGATAACT
BS10074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-PB | 612 | CG3689-RB | 1..612 | 628..17 | 3060 | 100 | Minus |
CG3689-PC | 714 | CG3689-RC | 1..577 | 628..52 | 2885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-RB | 2225 | CG3689-RB | 239..850 | 628..17 | 3060 | 100 | Minus |
CG3689-RC | 1177 | CG3689-RC | 239..815 | 628..52 | 2885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9411479..9411743 | 482..218 | 1325 | 100 | Minus |
3L | 28110227 | 3L | 9411815..9411982 | 219..52 | 840 | 100 | Minus |
3L | 28110227 | 3L | 9411276..9411421 | 628..483 | 730 | 100 | Minus |
3L | 28110227 | 3L | 9412154..9412189 | 52..17 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:14:00 has no hits.
BS10074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:36 Download gff for
BS10074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-PB | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:34 Download gff for
BS10074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-PB | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:10 Download gff for
BS10074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..852 | 13..628 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:48:32 Download gff for
BS10074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..852 | 13..628 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:48:32 Download gff for
BS10074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9411276..9411421 | 483..628 | 100 | -> | Minus |
3L | 9411479..9411743 | 218..482 | 100 | -> | Minus |
3L | 9411817..9411982 | 52..217 | 100 | -> | Minus |
3L | 9412155..9412191 | 13..51 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:10 Download gff for
BS10074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9405255..9405291 | 13..51 | 94 | | Minus |
arm_3L | 9404376..9404521 | 483..628 | 100 | -> | Minus |
arm_3L | 9404579..9404843 | 218..482 | 100 | -> | Minus |
arm_3L | 9404917..9405082 | 52..217 | 100 | -> | Minus |
BS10074.complete Sequence
644 bp (644 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636552
> BS10074.complete
GAAGTTATCAGTCGACATGGCGTCCTCGCAAGTCTCAAACAAATCGGGCT
CCGGTTGGCCGCGCCGCGGAAGCCAAGGCCAAGCGGATGCAGCCAGCAGC
AATAACAACGGTACCCAGAAGTACACCAACCAGGCGCTAACCATCAATCG
CACCATCAACTTATACCCCCTTACGAACTACACATTCGGCACCAAGGAGC
CGCTCTTTGAGAAGGATCCGTCGGTGCCATCCCGATTCCAGCGGATGCGC
GAGGAATTCGACCGGATCGGAATGCGGCGCTCCGTCGAGGGAGTGCTTCT
GGTCCACGAGCACGGACTGCCACATGTCTTGCTCCTGCAGCTGGGCACCA
CGTTCTTCAAATTGCCCGGTGGCGAGCTAAACGCCGGCGAGGATGAGGTC
GAGGGCCTCAAGAGATTGCTATCCGAGACGCTGGGTCGTCAGGACGGCGT
AAAGCAGGAGTGGATTGTTGAGGACACGATTGGGAACTGGTGGCGGCCGA
ACTTTGAGCCACCGCAATATCCATACATTCCGCCGCACATCACCAAGCCC
AAGGAGCACAAGCGGCTTTTCCTCGTCCAGCTACATGAAAAGGATACGGA
CGGGAACGCCAGTTACGATGTACCCTGAAAGCTTTCTAGACCAT
BS10074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-RB | 612 | CG3689-PB | 1..612 | 17..628 | 3060 | 100 | Plus |
CG3689-RC | 714 | CG3689-PC | 1..577 | 17..593 | 2885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-RB | 2225 | CG3689-RB | 239..850 | 17..628 | 3060 | 100 | Plus |
CG3689-RC | 1177 | CG3689-RC | 239..815 | 17..593 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9411479..9411743 | 163..427 | 1325 | 100 | Plus |
3L | 28110227 | 3L | 9411815..9411982 | 426..593 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9411276..9411421 | 17..162 | 730 | 100 | Plus |
3L | 28110227 | 3L | 9412154..9412189 | 593..628 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:52:28 has no hits.
BS10074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:55 Download gff for
BS10074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:50 Download gff for
BS10074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 218..831 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:59 Download gff for
BS10074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..849 | 17..627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:56 Download gff for
BS10074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 218..831 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:08 Download gff for
BS10074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3689-RB | 239..849 | 17..627 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:08 Download gff for
BS10074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9411276..9411421 | 17..162 | 100 | -> | Plus |
3L | 9411817..9411982 | 428..593 | 100 | -> | Plus |
3L | 9412155..9412188 | 594..627 | 100 | | Plus |
3L | 9411479..9411743 | 163..427 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:59 Download gff for
BS10074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9404376..9404521 | 17..162 | 100 | -> | Plus |
arm_3L | 9404579..9404843 | 163..427 | 100 | -> | Plus |
arm_3L | 9404917..9405082 | 428..593 | 100 | -> | Plus |
arm_3L | 9405255..9405288 | 594..627 | 100 | | Plus |
BS10074.pep Sequence
Translation from 16 to 627
> BS10074.pep
MASSQVSNKSGSGWPRRGSQGQADAASSNNNGTQKYTNQALTINRTINLY
PLTNYTFGTKEPLFEKDPSVPSRFQRMREEFDRIGMRRSVEGVLLVHEHG
LPHVLLLQLGTTFFKLPGGELNAGEDEVEGLKRLLSETLGRQDGVKQEWI
VEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLHEKDTDGNASY
DVP*
BS10074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3689-PB | 203 | CG3689-PB | 1..203 | 1..203 | 1088 | 100 | Plus |
CG3689-PC | 237 | CG3689-PC | 1..192 | 1..192 | 1027 | 100 | Plus |