Clone Sequence Records
BS10075.3prime Sequence
885 bp (839 high quality bases) assembled on 2006-04-19
> BS10075.3prime
ATGGTCTAGAAAGCTTTCAGATGGAAGTCGTTTGTCTGCGGTTCCATCGC
CACACGGTGGCGTCATCGCACACGTAGACCAGTACGCTGGCATCGCGGGA
GAAGGCGATCTGGCGCACAGTGGCCACGCTACGCGAATTGTGCAGGGTGG
TCATGTGTGCGCCCTCGGGATCGCTGGGATCCAGCTCCCACACATACACC
TTGCCCTGCTGATTGCCCAGGGCAATCACCTTCTGCCACGGATTGAAGCC
GAATCTCACGAACCAGATCTCGCACTCATCGTACTCGAATTCCGCGATTA
TCGTGCAGGAGGAGTCGCTCGGCTTCACCTGCTCGAAACTCTGATGTAGT
TGTCCCGGCTTCCAGCAGACAATGGCATTTTCGCAGGACTTGGAGAGCAC
AAAGTTGCCGAACCACTGCACACAGTCCACATAGTTCCTGTGTATATCCC
GCGTTGAAAAATCGGGGAAGTGCTTGGTCACCGTGGGGAAAGGCAGCGTT
GACTTCTCCTGGCTGAAAGTGTTCGACAGTTCGATCTTGTGATGGAACTC
GGGCGTATTCAGACACCACAGCTTCAGCGAGTGATCCATGCCGCTCGACA
CAATGCGATCTCCACGCATATTAAAGTCGATGGACAGCACCTCATCGCGA
TGTCCCTCCACTCCGCCCAGGATGGCAATGCACACATGGCTCTGGATGTT
CCACAATCTTATCGCGTGATCCTTGCTGCCCGAAAGCAAAAGCTGTAGCT
TGTGCGGATGGAACTTCAGCTCGTTAATGGCCTGTCCATGGCCAATGTAG
TTGCCCACCGCCTCATTCTGCTCGACATCAATAACCCGGATGACTCCGCG
GTATCCAGCAGCGGCCAGGAGAGGTGAAGAGGTCT
BS10075.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14941-PA | 1278 | esc-RA | 410..1278 | 885..17 | 4170 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
esc-RA | 1704 | CG14941-RA | 580..1448 | 885..17 | 4240 | 99.2 | Minus |
escl-RC | 1532 | CG5202-RC | 662..1110 | 802..354 | 340 | 72.3 | Minus |
escl-RA | 1809 | CG5202-RA | 662..1110 | 802..354 | 340 | 72.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11827460..11828328 | 17..885 | 4240 | 99.2 | Plus |
2L | 23513712 | 2L | 11991701..11992149 | 802..354 | 325 | 71.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:07:49 has no hits.
BS10075.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:38 Download gff for
BS10075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-PA | 410..1278 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:37 Download gff for
BS10075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14941-PA | 410..1278 | 17..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:52:34 Download gff for
BS10075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 580..1452 | 13..885 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:01 Download gff for
BS10075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 580..1452 | 13..885 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:01 Download gff for
BS10075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11827456..11828328 | 13..885 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:52:34 Download gff for
BS10075.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11827456..11828328 | 13..885 | 98 | | Plus |
BS10075.5prime Sequence
830 bp (829 high quality bases) assembled on 2006-04-19
> BS10075.5prime
GAAGTTATCAGTCGACATGAGCAGTGATAAAGTGAAAAACGGCAACGAGC
CCGAGGAGTCGGAGGAATCATGCGGCGATGAGTCGGCCAGCTATACCACC
AACAGCACCACCTCGCGCAGCAAGTCCCCGTCATCCAGCACGCGCAGCAA
GCGCCGCGGTCGCCGGAGCACCAAATCGAAGCCAAAAAGTCGCGCCGCCT
ACAAATACGACACCCACGTGAAGGAGAACCACGGAGCCAACATCTTCGGC
GTAGCCTTCAACACGCTGCTGGGCAAGGATGAGCCACAGGTCTTCGCTAC
GGCGGGCAGCAACCGGGTGACCGTCTACGAGTGCCCTCGACAGGGCGGGA
TGCAGCTGCTCCACTGCTATGCAGATCCGGATCCCGATGAAGTATTTTAC
ACCTGCGCCTGGTCGTACGACCTTAAGACCTCTTCACCTCTCCTGGCCGC
TGCTGGATACCGCGGAGTCATCCGGGTTATTGATGTCGAGCAGAATGAGG
CGGTGGGCAACTACATTGGCCATGGACAGGCCATTAACGAGCTGAAGTTC
CATCCGCACAAGCTACAGCTTTTGCTTTCGGGCAGCAAGGATCACGCGAT
AAGATTGTGGAACATCCAGAGCCATGTGTGCATTGCCATCCTGGGCGGAG
TGGAGGGACATCGCGATGAGGTGCTGTCCATCGACTTTAATATGCGTGGA
GATCGCATTGTGTCGAGCGGCATGGATCACTCGCTGAAGCTGTGGTGTCT
GAATACGCCCGAGTTCCATCACAAGATCGAACTGTCGAACACTTTCAGCC
AGGAGAAGTCAACGCTGCCTTTCCCCACGG
BS10075.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14941-PA | 1278 | esc-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
esc-RA | 1704 | CG14941-RA | 166..984 | 12..830 | 4080 | 99.9 | Plus |
escl-RC | 1532 | CG5202-RC | 662..915 | 509..762 | 310 | 75.3 | Plus |
escl-RA | 1809 | CG5202-RA | 662..915 | 509..762 | 310 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11827924..11828371 | 830..383 | 2240 | 100 | Minus |
2L | 23513712 | 2L | 11828736..11828907 | 382..211 | 860 | 100 | Minus |
2L | 23513712 | 2L | 11828970..11829103 | 210..77 | 670 | 100 | Minus |
2L | 23513712 | 2L | 11829175..11829240 | 77..12 | 315 | 98.5 | Minus |
2L | 23513712 | 2L | 11991701..11991954 | 509..762 | 295 | 74.4 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:17:22 has no hits.
BS10075.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:39 Download gff for
BS10075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:38 Download gff for
BS10075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14941-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:00:05 Download gff for
BS10075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 166..984 | 12..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:35:21 Download gff for
BS10075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 166..984 | 12..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:35:21 Download gff for
BS10075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11828970..11829103 | 77..210 | 100 | <- | Minus |
2L | 11829176..11829240 | 12..76 | 98 | | Minus |
2L | 11827924..11828371 | 383..830 | 100 | <- | Minus |
2L | 11828736..11828907 | 211..382 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:00:05 Download gff for
BS10075.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11828970..11829103 | 77..210 | 100 | <- | Minus |
arm_2L | 11829176..11829240 | 12..76 | 98 | | Minus |
arm_2L | 11827924..11828371 | 383..830 | 100 | <- | Minus |
arm_2L | 11828736..11828907 | 211..382 | 100 | <- | Minus |
BS10075.complete Sequence
1310 bp (1310 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636553
> BS10075.complete
GAAGTTATCAGTCGACATGAGCAGTGATAAAGTGAAAAACGGCAACGAGC
CCGAGGAGTCGGAGGAATCATGCGGCGATGAGTCGGCCAGCTATACCACC
AACAGCACCACCTCGCGCAGCAAGTCCCCGTCATCCAGCACGCGCAGCAA
GCGCCGCGGTCGCCGGAGCACCAAATCGAAGCCAAAAAGTCGCGCCGCCT
ACAAATACGACACCCACGTGAAGGAGAACCACGGAGCCAACATCTTCGGC
GTAGCCTTCAACACGCTGCTGGGCAAGGATGAGCCACAGGTCTTCGCTAC
GGCGGGCAGCAACCGGGTGACCGTCTACGAGTGCCCTCGACAGGGCGGGA
TGCAGCTGCTCCACTGCTATGCAGATCCGGATCCCGATGAAGTATTTTAC
ACCTGCGCCTGGTCGTACGACCTTAAGACCTCTTCACCTCTCCTGGCCGC
TGCTGGATACCGCGGAGTCATCCGGGTTATTGATGTCGAGCAGAATGAGG
CGGTGGGCAACTACATTGGCCATGGACAGGCCATTAACGAGCTGAAGTTC
CATCCGCACAAGCTACAGCTTTTGCTTTCGGGCAGCAAGGATCACGCGAT
AAGATTGTGGAACATCCAGAGCCATGTGTGCATTGCCATCCTGGGCGGAG
TGGAGGGACATCGCGATGAGGTGCTGTCCATCGACTTTAATATGCGTGGA
GATCGCATTGTGTCGAGCGGCATGGATCACTCGCTGAAGCTGTGGTGTCT
GAATACGCCCGAGTTCCATCACAAGATCGAACTGTCGAACACTTTCAGCC
AGGAGAAGTCAACGCTGCCTTTCCCCACGGTGACCAAGCACTTCCCCGAT
TTTTCAACGCGGGATATACACAGGAACTATGTGGACTGTGTGCAGTGGTT
CGGCAACTTTGTGCTCTCCAAGTCCTGCGAAAATGCCATTGTCTGCTGGA
AGCCGGGACAACTACATCAGAGTTTCGAGCAGGTGAAGCCGAGCGACTCC
TCCTGCACGATAATCGCGGAATTCGAGTACGATGAGTGCGAGATCTGGTT
CGTGAGATTCGGCTTCAATCCGTGGCAGAAGGTGATTGCCCTGGGCAATC
AGCAGGGCAAGGTGTATGTGTGGGAGCTGGATCCCAGCGATCCCGAGGGC
GCACACATGACCACCCTGCACAATTCGCGTAGCGTGGCCACTGTGCGCCA
GATCGCCTTCTCCCGCGATGCCAGCGTACTGGTCTACGTGTGCGATGACG
CCACCGTGTGGCGATGGAACCGCAGACAAACGACTTCCATCTGAAAGCTT
TCTAGACCAT
BS10075.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
esc-RA | 1278 | CG14941-PA | 1..1278 | 17..1294 | 6285 | 99.5 | Plus |
escl-RC | 1389 | CG5202-PC | 616..1064 | 509..957 | 325 | 71.5 | Plus |
escl-RA | 1389 | CG5202-PA | 616..1064 | 509..957 | 325 | 71.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
esc-RA | 1704 | CG14941-RA | 166..1448 | 12..1294 | 6295 | 99.4 | Plus |
escl-RC | 1532 | CG5202-RC | 662..1110 | 509..957 | 325 | 71.5 | Plus |
escl-RA | 1809 | CG5202-RA | 662..1110 | 509..957 | 325 | 71.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11827460..11828371 | 1294..383 | 4455 | 99.2 | Minus |
2L | 23513712 | 2L | 11828736..11828907 | 382..211 | 860 | 100 | Minus |
2L | 23513712 | 2L | 11828970..11829103 | 210..77 | 670 | 100 | Minus |
2L | 23513712 | 2L | 11991701..11992149 | 509..957 | 325 | 71.5 | Plus |
2L | 23513712 | 2L | 11829175..11829240 | 77..12 | 315 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:45:33 has no hits.
BS10075.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:27 Download gff for
BS10075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 1..1278 | 17..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:08 Download gff for
BS10075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 163..1449 | 12..1298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:51 Download gff for
BS10075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 171..1447 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:27 Download gff for
BS10075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 163..1449 | 12..1298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:13 Download gff for
BS10075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
esc-RA | 171..1447 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:13 Download gff for
BS10075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11827461..11828371 | 383..1293 | 99 | <- | Minus |
2L | 11828736..11828907 | 211..382 | 100 | <- | Minus |
2L | 11828970..11829103 | 77..210 | 100 | <- | Minus |
2L | 11829176..11829235 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:51 Download gff for
BS10075.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11828736..11828907 | 211..382 | 100 | <- | Minus |
arm_2L | 11828970..11829103 | 77..210 | 100 | <- | Minus |
arm_2L | 11829176..11829235 | 17..76 | 100 | | Minus |
arm_2L | 11827461..11828371 | 383..1293 | 99 | <- | Minus |
BS10075.pep Sequence
Translation from 16 to 1293
> BS10075.pep
MSSDKVKNGNEPEESEESCGDESASYTTNSTTSRSKSPSSSTRSKRRGRR
STKSKPKSRAAYKYDTHVKENHGANIFGVAFNTLLGKDEPQVFATAGSNR
VTVYECPRQGGMQLLHCYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRG
VIRVIDVEQNEAVGNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNI
QSHVCIAILGGVEGHRDEVLSIDFNMRGDRIVSSGMDHSLKLWCLNTPEF
HHKIELSNTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWFGNFVL
SKSCENAIVCWKPGQLHQSFEQVKPSDSSCTIIAEFEYDECEIWFVRFGF
NPWQKVIALGNQQGKVYVWELDPSDPEGAHMTTLHNSRSVATVRQIAFSR
DASVLVYVCDDATVWRWNRRQTTSI*
BS10075.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
esc-PA | 425 | CG14941-PA | 1..425 | 1..425 | 2291 | 100 | Plus |
escl-PC | 462 | CG5202-PC | 35..460 | 2..419 | 1356 | 58.4 | Plus |
escl-PA | 462 | CG5202-PA | 35..460 | 2..419 | 1356 | 58.4 | Plus |