Clone BS10075 Report

Search the DGRC for BS10075

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:75
Vector:pDNR-Dual
Associated Gene/Transcriptesc-RA
Protein status:BS10075.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10075.3prime Sequence

885 bp (839 high quality bases) assembled on 2006-04-19

> BS10075.3prime
ATGGTCTAGAAAGCTTTCAGATGGAAGTCGTTTGTCTGCGGTTCCATCGC
CACACGGTGGCGTCATCGCACACGTAGACCAGTACGCTGGCATCGCGGGA
GAAGGCGATCTGGCGCACAGTGGCCACGCTACGCGAATTGTGCAGGGTGG
TCATGTGTGCGCCCTCGGGATCGCTGGGATCCAGCTCCCACACATACACC
TTGCCCTGCTGATTGCCCAGGGCAATCACCTTCTGCCACGGATTGAAGCC
GAATCTCACGAACCAGATCTCGCACTCATCGTACTCGAATTCCGCGATTA
TCGTGCAGGAGGAGTCGCTCGGCTTCACCTGCTCGAAACTCTGATGTAGT
TGTCCCGGCTTCCAGCAGACAATGGCATTTTCGCAGGACTTGGAGAGCAC
AAAGTTGCCGAACCACTGCACACAGTCCACATAGTTCCTGTGTATATCCC
GCGTTGAAAAATCGGGGAAGTGCTTGGTCACCGTGGGGAAAGGCAGCGTT
GACTTCTCCTGGCTGAAAGTGTTCGACAGTTCGATCTTGTGATGGAACTC
GGGCGTATTCAGACACCACAGCTTCAGCGAGTGATCCATGCCGCTCGACA
CAATGCGATCTCCACGCATATTAAAGTCGATGGACAGCACCTCATCGCGA
TGTCCCTCCACTCCGCCCAGGATGGCAATGCACACATGGCTCTGGATGTT
CCACAATCTTATCGCGTGATCCTTGCTGCCCGAAAGCAAAAGCTGTAGCT
TGTGCGGATGGAACTTCAGCTCGTTAATGGCCTGTCCATGGCCAATGTAG
TTGCCCACCGCCTCATTCTGCTCGACATCAATAACCCGGATGACTCCGCG
GTATCCAGCAGCGGCCAGGAGAGGTGAAGAGGTCT

BS10075.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14941-PA 1278 esc-RA 410..1278 885..17 4170 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
esc-RA 1704 CG14941-RA 580..1448 885..17 4240 99.2 Minus
escl-RC 1532 CG5202-RC 662..1110 802..354 340 72.3 Minus
escl-RA 1809 CG5202-RA 662..1110 802..354 340 72.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11827460..11828328 17..885 4240 99.2 Plus
2L 23513712 2L 11991701..11992149 802..354 325 71.5 Minus
Blast to na_te.dros performed on 2015-02-11 11:07:49 has no hits.

BS10075.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:38 Download gff for BS10075.3prime
Subject Subject Range Query Range Percent Splice Strand
esc-PA 410..1278 17..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:37 Download gff for BS10075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14941-PA 410..1278 17..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:52:34 Download gff for BS10075.3prime
Subject Subject Range Query Range Percent Splice Strand
esc-RA 580..1452 13..885 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:01 Download gff for BS10075.3prime
Subject Subject Range Query Range Percent Splice Strand
esc-RA 580..1452 13..885 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:01 Download gff for BS10075.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11827456..11828328 13..885 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:52:34 Download gff for BS10075.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11827456..11828328 13..885 98   Plus

BS10075.5prime Sequence

830 bp (829 high quality bases) assembled on 2006-04-19

> BS10075.5prime
GAAGTTATCAGTCGACATGAGCAGTGATAAAGTGAAAAACGGCAACGAGC
CCGAGGAGTCGGAGGAATCATGCGGCGATGAGTCGGCCAGCTATACCACC
AACAGCACCACCTCGCGCAGCAAGTCCCCGTCATCCAGCACGCGCAGCAA
GCGCCGCGGTCGCCGGAGCACCAAATCGAAGCCAAAAAGTCGCGCCGCCT
ACAAATACGACACCCACGTGAAGGAGAACCACGGAGCCAACATCTTCGGC
GTAGCCTTCAACACGCTGCTGGGCAAGGATGAGCCACAGGTCTTCGCTAC
GGCGGGCAGCAACCGGGTGACCGTCTACGAGTGCCCTCGACAGGGCGGGA
TGCAGCTGCTCCACTGCTATGCAGATCCGGATCCCGATGAAGTATTTTAC
ACCTGCGCCTGGTCGTACGACCTTAAGACCTCTTCACCTCTCCTGGCCGC
TGCTGGATACCGCGGAGTCATCCGGGTTATTGATGTCGAGCAGAATGAGG
CGGTGGGCAACTACATTGGCCATGGACAGGCCATTAACGAGCTGAAGTTC
CATCCGCACAAGCTACAGCTTTTGCTTTCGGGCAGCAAGGATCACGCGAT
AAGATTGTGGAACATCCAGAGCCATGTGTGCATTGCCATCCTGGGCGGAG
TGGAGGGACATCGCGATGAGGTGCTGTCCATCGACTTTAATATGCGTGGA
GATCGCATTGTGTCGAGCGGCATGGATCACTCGCTGAAGCTGTGGTGTCT
GAATACGCCCGAGTTCCATCACAAGATCGAACTGTCGAACACTTTCAGCC
AGGAGAAGTCAACGCTGCCTTTCCCCACGG

BS10075.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14941-PA 1278 esc-RA 1..814 17..830 4070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
esc-RA 1704 CG14941-RA 166..984 12..830 4080 99.9 Plus
escl-RC 1532 CG5202-RC 662..915 509..762 310 75.3 Plus
escl-RA 1809 CG5202-RA 662..915 509..762 310 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11827924..11828371 830..383 2240 100 Minus
2L 23513712 2L 11828736..11828907 382..211 860 100 Minus
2L 23513712 2L 11828970..11829103 210..77 670 100 Minus
2L 23513712 2L 11829175..11829240 77..12 315 98.5 Minus
2L 23513712 2L 11991701..11991954 509..762 295 74.4 Plus
Blast to na_te.dros performed on 2015-02-04 04:17:22 has no hits.

BS10075.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:39 Download gff for BS10075.5prime
Subject Subject Range Query Range Percent Splice Strand
esc-PA 1..814 17..830 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:38 Download gff for BS10075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14941-PA 1..814 17..830 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:00:05 Download gff for BS10075.5prime
Subject Subject Range Query Range Percent Splice Strand
esc-RA 166..984 12..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:35:21 Download gff for BS10075.5prime
Subject Subject Range Query Range Percent Splice Strand
esc-RA 166..984 12..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:35:21 Download gff for BS10075.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11828970..11829103 77..210 100 <- Minus
2L 11829176..11829240 12..76 98   Minus
2L 11827924..11828371 383..830 100 <- Minus
2L 11828736..11828907 211..382 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:00:05 Download gff for BS10075.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11828970..11829103 77..210 100 <- Minus
arm_2L 11829176..11829240 12..76 98   Minus
arm_2L 11827924..11828371 383..830 100 <- Minus
arm_2L 11828736..11828907 211..382 100 <- Minus

BS10075.complete Sequence

1310 bp (1310 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636553

> BS10075.complete
GAAGTTATCAGTCGACATGAGCAGTGATAAAGTGAAAAACGGCAACGAGC
CCGAGGAGTCGGAGGAATCATGCGGCGATGAGTCGGCCAGCTATACCACC
AACAGCACCACCTCGCGCAGCAAGTCCCCGTCATCCAGCACGCGCAGCAA
GCGCCGCGGTCGCCGGAGCACCAAATCGAAGCCAAAAAGTCGCGCCGCCT
ACAAATACGACACCCACGTGAAGGAGAACCACGGAGCCAACATCTTCGGC
GTAGCCTTCAACACGCTGCTGGGCAAGGATGAGCCACAGGTCTTCGCTAC
GGCGGGCAGCAACCGGGTGACCGTCTACGAGTGCCCTCGACAGGGCGGGA
TGCAGCTGCTCCACTGCTATGCAGATCCGGATCCCGATGAAGTATTTTAC
ACCTGCGCCTGGTCGTACGACCTTAAGACCTCTTCACCTCTCCTGGCCGC
TGCTGGATACCGCGGAGTCATCCGGGTTATTGATGTCGAGCAGAATGAGG
CGGTGGGCAACTACATTGGCCATGGACAGGCCATTAACGAGCTGAAGTTC
CATCCGCACAAGCTACAGCTTTTGCTTTCGGGCAGCAAGGATCACGCGAT
AAGATTGTGGAACATCCAGAGCCATGTGTGCATTGCCATCCTGGGCGGAG
TGGAGGGACATCGCGATGAGGTGCTGTCCATCGACTTTAATATGCGTGGA
GATCGCATTGTGTCGAGCGGCATGGATCACTCGCTGAAGCTGTGGTGTCT
GAATACGCCCGAGTTCCATCACAAGATCGAACTGTCGAACACTTTCAGCC
AGGAGAAGTCAACGCTGCCTTTCCCCACGGTGACCAAGCACTTCCCCGAT
TTTTCAACGCGGGATATACACAGGAACTATGTGGACTGTGTGCAGTGGTT
CGGCAACTTTGTGCTCTCCAAGTCCTGCGAAAATGCCATTGTCTGCTGGA
AGCCGGGACAACTACATCAGAGTTTCGAGCAGGTGAAGCCGAGCGACTCC
TCCTGCACGATAATCGCGGAATTCGAGTACGATGAGTGCGAGATCTGGTT
CGTGAGATTCGGCTTCAATCCGTGGCAGAAGGTGATTGCCCTGGGCAATC
AGCAGGGCAAGGTGTATGTGTGGGAGCTGGATCCCAGCGATCCCGAGGGC
GCACACATGACCACCCTGCACAATTCGCGTAGCGTGGCCACTGTGCGCCA
GATCGCCTTCTCCCGCGATGCCAGCGTACTGGTCTACGTGTGCGATGACG
CCACCGTGTGGCGATGGAACCGCAGACAAACGACTTCCATCTGAAAGCTT
TCTAGACCAT

BS10075.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
esc-RA 1278 CG14941-PA 1..1278 17..1294 6285 99.5 Plus
escl-RC 1389 CG5202-PC 616..1064 509..957 325 71.5 Plus
escl-RA 1389 CG5202-PA 616..1064 509..957 325 71.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
esc-RA 1704 CG14941-RA 166..1448 12..1294 6295 99.4 Plus
escl-RC 1532 CG5202-RC 662..1110 509..957 325 71.5 Plus
escl-RA 1809 CG5202-RA 662..1110 509..957 325 71.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11827460..11828371 1294..383 4455 99.2 Minus
2L 23513712 2L 11828736..11828907 382..211 860 100 Minus
2L 23513712 2L 11828970..11829103 210..77 670 100 Minus
2L 23513712 2L 11991701..11992149 509..957 325 71.5 Plus
2L 23513712 2L 11829175..11829240 77..12 315 98.5 Minus
Blast to na_te.dros performed on 2014-11-27 16:45:33 has no hits.

BS10075.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:27 Download gff for BS10075.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 1..1278 17..1294 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:24:08 Download gff for BS10075.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 163..1449 12..1298 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:51 Download gff for BS10075.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 171..1447 17..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:27 Download gff for BS10075.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 163..1449 12..1298 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:13 Download gff for BS10075.complete
Subject Subject Range Query Range Percent Splice Strand
esc-RA 171..1447 17..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:13 Download gff for BS10075.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11827461..11828371 383..1293 99 <- Minus
2L 11828736..11828907 211..382 100 <- Minus
2L 11828970..11829103 77..210 100 <- Minus
2L 11829176..11829235 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:51 Download gff for BS10075.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11828736..11828907 211..382 100 <- Minus
arm_2L 11828970..11829103 77..210 100 <- Minus
arm_2L 11829176..11829235 17..76 100   Minus
arm_2L 11827461..11828371 383..1293 99 <- Minus

BS10075.pep Sequence

Translation from 16 to 1293

> BS10075.pep
MSSDKVKNGNEPEESEESCGDESASYTTNSTTSRSKSPSSSTRSKRRGRR
STKSKPKSRAAYKYDTHVKENHGANIFGVAFNTLLGKDEPQVFATAGSNR
VTVYECPRQGGMQLLHCYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRG
VIRVIDVEQNEAVGNYIGHGQAINELKFHPHKLQLLLSGSKDHAIRLWNI
QSHVCIAILGGVEGHRDEVLSIDFNMRGDRIVSSGMDHSLKLWCLNTPEF
HHKIELSNTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWFGNFVL
SKSCENAIVCWKPGQLHQSFEQVKPSDSSCTIIAEFEYDECEIWFVRFGF
NPWQKVIALGNQQGKVYVWELDPSDPEGAHMTTLHNSRSVATVRQIAFSR
DASVLVYVCDDATVWRWNRRQTTSI*

BS10075.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
esc-PA 425 CG14941-PA 1..425 1..425 2291 100 Plus
escl-PC 462 CG5202-PC 35..460 2..419 1356 58.4 Plus
escl-PA 462 CG5202-PA 35..460 2..419 1356 58.4 Plus