Clone BS10079 Report

Search the DGRC for BS10079

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG14642-RA
Protein status:BS10079.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10079.3prime Sequence

633 bp (632 high quality bases) assembled on 2006-04-19

> BS10079.3prime
ATGGTCTAGAAAGCTTTCAAGGTCCCCGATGCGAACCCACTTGGGGGGCG
CCTCGTATATGGATGTACAGTGGGCTGCGGTAAGCACGAATCTCTCGCTT
ATCAAGCTGCCGCCACATTTGTAGTCCACTTGCCCTCTGTCCGACTCGAA
GCCCACGGCAGCCGGGCCGGGCCAGGACCCGACCATCGAAGTCTGCGTCG
TTGGCATCGGCAGCCACTGCGGTATCATTGGGAAAGATGCGCTCCACATA
TTCGGAATATTTTTGCTCGCAGAGGCGGCGTTGCTTGTTTTCCTTCTTTT
TAAAGCCCCCGGGGGGCGGCGGAAAGGGCTGGCCGGGCATCGGCGGCGGG
GGGTATTGTCTGGGCTTGGGCTTGGGCTGGGTCGGGCCCTCCACCCGATC
AAATTGAAAGTCTGTTATGTGAAACCACATCTTCTCCTCGGGCTTGCCTG
GTCCCGCGTCTAACTCCGGAAAGACTATGTCGCGGTCCACGGGAGAGCGG
ATCGAGTCGTCTTGCAAGGGGCGCATTCGCCCTTCTGGGGGCAGGCGCTG
GGTGTGAGTATTGCTCAGGCACCAGAGCCCGATAAATGATATCAGACACA
CGGACAGATTGCGAAGCATGTCGACTGATAACT

BS10079.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-PA 603 CG14642-RA 1..603 619..17 3015 100 Minus
CG14642-PB 1179 CG14642-RB 1..458 619..162 2290 100 Minus
CG14642-PB 1179 CG14642-RB 474..620 163..17 735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-RA 1344 CG14642-RA 23..625 619..17 3015 100 Minus
CG14642-RC 1305 CG14642-RC 23..642 619..17 2835 97.3 Minus
CG14642-RB 1270 CG14642-RB 23..642 619..17 2835 97.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4242338..4242695 262..619 1790 100 Plus
3R 32079331 3R 4241977..4242088 52..163 560 100 Plus
3R 32079331 3R 4242174..4242277 162..265 505 99 Plus
3R 32079331 3R 4241884..4241919 17..52 180 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:12:29 has no hits.

BS10079.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:46 Download gff for BS10079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-PA 1..603 17..619 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:49 Download gff for BS10079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-PA 1..603 17..619 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:44:09 Download gff for BS10079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..628 12..619 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:19:08 Download gff for BS10079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..628 12..619 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:19:08 Download gff for BS10079.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4241881..4241919 12..52 92 <- Plus
3R 4241978..4242087 53..162 100 <- Plus
3R 4242175..4242273 163..261 100 <- Plus
3R 4242338..4242695 262..619 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:44:09 Download gff for BS10079.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 67603..67641 12..52 92 <- Plus
arm_3R 67700..67809 53..162 100 <- Plus
arm_3R 67897..67995 163..261 100 <- Plus
arm_3R 68060..68417 262..619 100   Plus

BS10079.5prime Sequence

633 bp (632 high quality bases) assembled on 2006-04-19

> BS10079.5prime
GAAGTTATCAGTCGACATGCTTCGCAATCTGTCCGTGTGTCTGATATCAT
TTATCGGGCTCTGGTGCCTGAGCAATACTCACACCCAGCGCCTGCCCCCA
GAAGGGCGAATGCGCCCCTTGCAAGACGACTCGATCCGCTCTCCCGTGGA
CCGCGACATAGTCTTTCCGGAGTTAGACGCGGGACCAGGCAAGCCCGAGG
AGAAGATGTGGTTTCACATAACAGACTTTCAATTTGATCGGGTGGAGGGC
CCGACCCAGCCCAAGCCCAAGCCCAGACAATACCCCCCGCCGCCGATGCC
CGGCCAGCCCTTTCCGCCGCCCCCCGGGGGCTTTAAAAAGAAGGAAAACA
AGCAACGCCGCCTCTGCGAGCAAAAATATTCCGAATATGTGGAGCGCATC
TTTCCCAATGATACCGCAGTGGCTGCCGATGCCAACGACGCAGACTTCGA
TGGTCGGGTCCTGGCCCGGCCCGGCTGCCGTGGGCTTCGAGTCGGACAGA
GGGCAAGTGGACTACAAATGTGGCGGCAGCTTGATAAGCGAGAGATTCGT
GCTTACCGCAGCCCACTGTACATCCATATACGAGGCGCCCCCCAAGTGGG
TTCGCATCGGGGACCTTGAAAGCTTTCTAGACC

BS10079.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-PA 603 CG14642-RA 1..603 17..619 3015 100 Plus
CG14642-PB 1179 CG14642-RB 1..458 17..474 2290 100 Plus
CG14642-PB 1179 CG14642-RB 474..620 473..619 735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-RA 1344 CG14642-RA 23..625 17..619 3015 100 Plus
CG14642-RC 1305 CG14642-RC 23..642 17..619 2835 97.3 Plus
CG14642-RB 1270 CG14642-RB 23..642 17..619 2835 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4242338..4242695 374..17 1790 100 Minus
3R 32079331 3R 4241977..4242088 584..473 560 100 Minus
3R 32079331 3R 4242174..4242277 474..371 505 99 Minus
3R 32079331 3R 4241884..4241919 619..584 180 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:23:47 has no hits.

BS10079.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:47 Download gff for BS10079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-PA 1..603 17..619 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:50 Download gff for BS10079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-PA 1..603 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:33:39 Download gff for BS10079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..628 17..624 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:04:41 Download gff for BS10079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..628 17..624 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:04:41 Download gff for BS10079.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4241881..4241919 584..624 92 <- Minus
3R 4241978..4242087 474..583 100 <- Minus
3R 4242175..4242273 375..473 100 <- Minus
3R 4242338..4242695 17..374 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:33:39 Download gff for BS10079.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 67603..67641 584..624 92 <- Minus
arm_3R 67700..67809 474..583 100 <- Minus
arm_3R 67897..67995 375..473 100 <- Minus
arm_3R 68060..68417 17..374 100   Minus

BS10079.complete Sequence

635 bp (635 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636554

> BS10079.complete
GAAGTTATCAGTCGACATGCTTCGCAATCTGTCCGTGTGTCTGATATCAT
TTATCGGGCTCTGGTGCCTGAGCAATACTCACACCCAGCGCCTGCCCCCA
GAAGGGCGAATGCGCCCCTTGCAAGACGACTCGATCCGCTCTCCCGTGGA
CCGCGACATAGTCTTTCCGGAGTTAGACGCGGGACCAGGCAAGCCCGAGG
AGAAGATGTGGTTTCACATAACAGACTTTCAATTTGATCGGGTGGAGGGC
CCGACCCAGCCCAAGCCCAAGCCCAGACAATACCCCCCGCCGCCGATGCC
CGGCCAGCCCTTTCCGCCGCCCCCCGGGGGCTTTAAAAAGAAGGAAAACA
AGCAACGCCGCCTCTGCGAGCAAAAATATTCCGAATATGTGGAGCGCATC
TTTCCCAATGATACCGCAGTGGCTGCCGATGCCAACGACGCAGACTTCGA
TGGTCGGGTCCTGGCCCGGCCCGGCTGCCGTGGGCTTCGAGTCGGACAGA
GGGCAAGTGGACTACAAATGTGGCGGCAGCTTGATAAGCGAGAGATTCGT
GCTTACCGCAGCCCACTGTACATCCATATACGAGGCGCCCCCCAAGTGGG
TTCGCATCGGGGACCTTGAAAGCTTTCTAGACCAT

BS10079.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-RA 603 CG14642-PA 1..603 17..619 3015 100 Plus
CG14642-RC 1179 CG14642-PC 1..620 17..619 2810 97.3 Plus
CG14642-RB 1179 CG14642-PB 1..620 17..619 2810 97.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-RA 1344 CG14642-RA 23..625 17..619 3015 100 Plus
CG14642-RC 1305 CG14642-RC 23..642 17..619 2810 97.3 Plus
CG14642-RB 1270 CG14642-RB 23..642 17..619 2810 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4242338..4242695 374..17 1790 100 Minus
3R 32079331 3R 4241977..4242088 584..473 560 100 Minus
3R 32079331 3R 4242174..4242277 474..371 505 99 Minus
3R 32079331 3R 4241884..4241919 619..584 180 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:18:17 has no hits.

BS10079.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:16 Download gff for BS10079.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 1..603 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:54 Download gff for BS10079.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 92..697 17..624 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:25:21 Download gff for BS10079.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..624 17..618 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:16 Download gff for BS10079.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 92..697 17..624 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:23 Download gff for BS10079.complete
Subject Subject Range Query Range Percent Splice Strand
CG14642-RA 23..624 17..618 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:23 Download gff for BS10079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4241885..4241919 584..618 100 <- Minus
3R 4241978..4242087 474..583 100 <- Minus
3R 4242175..4242273 375..473 100 <- Minus
3R 4242338..4242695 17..374 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:25:21 Download gff for BS10079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 67607..67641 584..618 100 <- Minus
arm_3R 67700..67809 474..583 100 <- Minus
arm_3R 67897..67995 375..473 100 <- Minus
arm_3R 68060..68417 17..374 100   Minus

BS10079.pep Sequence

Translation from 16 to 618

> BS10079.pep
MLRNLSVCLISFIGLWCLSNTHTQRLPPEGRMRPLQDDSIRSPVDRDIVF
PELDAGPGKPEEKMWFHITDFQFDRVEGPTQPKPKPRQYPPPPMPGQPFP
PPPGGFKKKENKQRRLCEQKYSEYVERIFPNDTAVAADANDADFDGRVLA
RPGCRGLRVGQRASGLQMWRQLDKREIRAYRSPLYIHIRGAPQVGSHRGP
*

BS10079.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14642-PA 200 CG14642-PA 1..200 1..200 1100 100 Plus
CG14642-PC 392 CG14642-PC 1..153 1..153 847 100 Plus
CG14642-PB 392 CG14642-PB 1..153 1..153 847 100 Plus