Clone Sequence Records
BS10079.3prime Sequence
633 bp (632 high quality bases) assembled on 2006-04-19
> BS10079.3prime
ATGGTCTAGAAAGCTTTCAAGGTCCCCGATGCGAACCCACTTGGGGGGCG
CCTCGTATATGGATGTACAGTGGGCTGCGGTAAGCACGAATCTCTCGCTT
ATCAAGCTGCCGCCACATTTGTAGTCCACTTGCCCTCTGTCCGACTCGAA
GCCCACGGCAGCCGGGCCGGGCCAGGACCCGACCATCGAAGTCTGCGTCG
TTGGCATCGGCAGCCACTGCGGTATCATTGGGAAAGATGCGCTCCACATA
TTCGGAATATTTTTGCTCGCAGAGGCGGCGTTGCTTGTTTTCCTTCTTTT
TAAAGCCCCCGGGGGGCGGCGGAAAGGGCTGGCCGGGCATCGGCGGCGGG
GGGTATTGTCTGGGCTTGGGCTTGGGCTGGGTCGGGCCCTCCACCCGATC
AAATTGAAAGTCTGTTATGTGAAACCACATCTTCTCCTCGGGCTTGCCTG
GTCCCGCGTCTAACTCCGGAAAGACTATGTCGCGGTCCACGGGAGAGCGG
ATCGAGTCGTCTTGCAAGGGGCGCATTCGCCCTTCTGGGGGCAGGCGCTG
GGTGTGAGTATTGCTCAGGCACCAGAGCCCGATAAATGATATCAGACACA
CGGACAGATTGCGAAGCATGTCGACTGATAACT
BS10079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-PA | 603 | CG14642-RA | 1..603 | 619..17 | 3015 | 100 | Minus |
CG14642-PB | 1179 | CG14642-RB | 1..458 | 619..162 | 2290 | 100 | Minus |
CG14642-PB | 1179 | CG14642-RB | 474..620 | 163..17 | 735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-RA | 1344 | CG14642-RA | 23..625 | 619..17 | 3015 | 100 | Minus |
CG14642-RC | 1305 | CG14642-RC | 23..642 | 619..17 | 2835 | 97.3 | Minus |
CG14642-RB | 1270 | CG14642-RB | 23..642 | 619..17 | 2835 | 97.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4242338..4242695 | 262..619 | 1790 | 100 | Plus |
3R | 32079331 | 3R | 4241977..4242088 | 52..163 | 560 | 100 | Plus |
3R | 32079331 | 3R | 4242174..4242277 | 162..265 | 505 | 99 | Plus |
3R | 32079331 | 3R | 4241884..4241919 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:12:29 has no hits.
BS10079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:46 Download gff for
BS10079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-PA | 1..603 | 17..619 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:49 Download gff for
BS10079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-PA | 1..603 | 17..619 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:44:09 Download gff for
BS10079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..628 | 12..619 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:19:08 Download gff for
BS10079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..628 | 12..619 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:19:08 Download gff for
BS10079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4241881..4241919 | 12..52 | 92 | <- | Plus |
3R | 4241978..4242087 | 53..162 | 100 | <- | Plus |
3R | 4242175..4242273 | 163..261 | 100 | <- | Plus |
3R | 4242338..4242695 | 262..619 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:44:09 Download gff for
BS10079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 67603..67641 | 12..52 | 92 | <- | Plus |
arm_3R | 67700..67809 | 53..162 | 100 | <- | Plus |
arm_3R | 67897..67995 | 163..261 | 100 | <- | Plus |
arm_3R | 68060..68417 | 262..619 | 100 | | Plus |
BS10079.5prime Sequence
633 bp (632 high quality bases) assembled on 2006-04-19
> BS10079.5prime
GAAGTTATCAGTCGACATGCTTCGCAATCTGTCCGTGTGTCTGATATCAT
TTATCGGGCTCTGGTGCCTGAGCAATACTCACACCCAGCGCCTGCCCCCA
GAAGGGCGAATGCGCCCCTTGCAAGACGACTCGATCCGCTCTCCCGTGGA
CCGCGACATAGTCTTTCCGGAGTTAGACGCGGGACCAGGCAAGCCCGAGG
AGAAGATGTGGTTTCACATAACAGACTTTCAATTTGATCGGGTGGAGGGC
CCGACCCAGCCCAAGCCCAAGCCCAGACAATACCCCCCGCCGCCGATGCC
CGGCCAGCCCTTTCCGCCGCCCCCCGGGGGCTTTAAAAAGAAGGAAAACA
AGCAACGCCGCCTCTGCGAGCAAAAATATTCCGAATATGTGGAGCGCATC
TTTCCCAATGATACCGCAGTGGCTGCCGATGCCAACGACGCAGACTTCGA
TGGTCGGGTCCTGGCCCGGCCCGGCTGCCGTGGGCTTCGAGTCGGACAGA
GGGCAAGTGGACTACAAATGTGGCGGCAGCTTGATAAGCGAGAGATTCGT
GCTTACCGCAGCCCACTGTACATCCATATACGAGGCGCCCCCCAAGTGGG
TTCGCATCGGGGACCTTGAAAGCTTTCTAGACC
BS10079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-PA | 603 | CG14642-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
CG14642-PB | 1179 | CG14642-RB | 1..458 | 17..474 | 2290 | 100 | Plus |
CG14642-PB | 1179 | CG14642-RB | 474..620 | 473..619 | 735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-RA | 1344 | CG14642-RA | 23..625 | 17..619 | 3015 | 100 | Plus |
CG14642-RC | 1305 | CG14642-RC | 23..642 | 17..619 | 2835 | 97.3 | Plus |
CG14642-RB | 1270 | CG14642-RB | 23..642 | 17..619 | 2835 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4242338..4242695 | 374..17 | 1790 | 100 | Minus |
3R | 32079331 | 3R | 4241977..4242088 | 584..473 | 560 | 100 | Minus |
3R | 32079331 | 3R | 4242174..4242277 | 474..371 | 505 | 99 | Minus |
3R | 32079331 | 3R | 4241884..4241919 | 619..584 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:23:47 has no hits.
BS10079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:47 Download gff for
BS10079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-PA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:50 Download gff for
BS10079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-PA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:33:39 Download gff for
BS10079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..628 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:04:41 Download gff for
BS10079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..628 | 17..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:04:41 Download gff for
BS10079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4241881..4241919 | 584..624 | 92 | <- | Minus |
3R | 4241978..4242087 | 474..583 | 100 | <- | Minus |
3R | 4242175..4242273 | 375..473 | 100 | <- | Minus |
3R | 4242338..4242695 | 17..374 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:33:39 Download gff for
BS10079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 67603..67641 | 584..624 | 92 | <- | Minus |
arm_3R | 67700..67809 | 474..583 | 100 | <- | Minus |
arm_3R | 67897..67995 | 375..473 | 100 | <- | Minus |
arm_3R | 68060..68417 | 17..374 | 100 | | Minus |
BS10079.complete Sequence
635 bp (635 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636554
> BS10079.complete
GAAGTTATCAGTCGACATGCTTCGCAATCTGTCCGTGTGTCTGATATCAT
TTATCGGGCTCTGGTGCCTGAGCAATACTCACACCCAGCGCCTGCCCCCA
GAAGGGCGAATGCGCCCCTTGCAAGACGACTCGATCCGCTCTCCCGTGGA
CCGCGACATAGTCTTTCCGGAGTTAGACGCGGGACCAGGCAAGCCCGAGG
AGAAGATGTGGTTTCACATAACAGACTTTCAATTTGATCGGGTGGAGGGC
CCGACCCAGCCCAAGCCCAAGCCCAGACAATACCCCCCGCCGCCGATGCC
CGGCCAGCCCTTTCCGCCGCCCCCCGGGGGCTTTAAAAAGAAGGAAAACA
AGCAACGCCGCCTCTGCGAGCAAAAATATTCCGAATATGTGGAGCGCATC
TTTCCCAATGATACCGCAGTGGCTGCCGATGCCAACGACGCAGACTTCGA
TGGTCGGGTCCTGGCCCGGCCCGGCTGCCGTGGGCTTCGAGTCGGACAGA
GGGCAAGTGGACTACAAATGTGGCGGCAGCTTGATAAGCGAGAGATTCGT
GCTTACCGCAGCCCACTGTACATCCATATACGAGGCGCCCCCCAAGTGGG
TTCGCATCGGGGACCTTGAAAGCTTTCTAGACCAT
BS10079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-RA | 603 | CG14642-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
CG14642-RC | 1179 | CG14642-PC | 1..620 | 17..619 | 2810 | 97.3 | Plus |
CG14642-RB | 1179 | CG14642-PB | 1..620 | 17..619 | 2810 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-RA | 1344 | CG14642-RA | 23..625 | 17..619 | 3015 | 100 | Plus |
CG14642-RC | 1305 | CG14642-RC | 23..642 | 17..619 | 2810 | 97.3 | Plus |
CG14642-RB | 1270 | CG14642-RB | 23..642 | 17..619 | 2810 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4242338..4242695 | 374..17 | 1790 | 100 | Minus |
3R | 32079331 | 3R | 4241977..4242088 | 584..473 | 560 | 100 | Minus |
3R | 32079331 | 3R | 4242174..4242277 | 474..371 | 505 | 99 | Minus |
3R | 32079331 | 3R | 4241884..4241919 | 619..584 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:18:17 has no hits.
BS10079.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:16 Download gff for
BS10079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:54 Download gff for
BS10079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 92..697 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:25:21 Download gff for
BS10079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..624 | 17..618 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:16 Download gff for
BS10079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 92..697 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:23 Download gff for
BS10079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14642-RA | 23..624 | 17..618 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:23 Download gff for
BS10079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4241885..4241919 | 584..618 | 100 | <- | Minus |
3R | 4241978..4242087 | 474..583 | 100 | <- | Minus |
3R | 4242175..4242273 | 375..473 | 100 | <- | Minus |
3R | 4242338..4242695 | 17..374 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:25:21 Download gff for
BS10079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 67607..67641 | 584..618 | 100 | <- | Minus |
arm_3R | 67700..67809 | 474..583 | 100 | <- | Minus |
arm_3R | 67897..67995 | 375..473 | 100 | <- | Minus |
arm_3R | 68060..68417 | 17..374 | 100 | | Minus |
BS10079.pep Sequence
Translation from 16 to 618
> BS10079.pep
MLRNLSVCLISFIGLWCLSNTHTQRLPPEGRMRPLQDDSIRSPVDRDIVF
PELDAGPGKPEEKMWFHITDFQFDRVEGPTQPKPKPRQYPPPPMPGQPFP
PPPGGFKKKENKQRRLCEQKYSEYVERIFPNDTAVAADANDADFDGRVLA
RPGCRGLRVGQRASGLQMWRQLDKREIRAYRSPLYIHIRGAPQVGSHRGP
*
BS10079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14642-PA | 200 | CG14642-PA | 1..200 | 1..200 | 1100 | 100 | Plus |
CG14642-PC | 392 | CG14642-PC | 1..153 | 1..153 | 847 | 100 | Plus |
CG14642-PB | 392 | CG14642-PB | 1..153 | 1..153 | 847 | 100 | Plus |