Clone BS10080 Report

Search the DGRC for BS10080

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptMFS18-RA
Protein status:BS10080.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10080.3prime Sequence

941 bp (784 high quality bases) assembled on 2006-04-19

> BS10080.3prime
ATGGTCTAGAAAGCTTTTAAACGATGGCTTCCGCCGAACCAAAGACTATA
AATATGATCCAGCCAACCAAATTGATGCCAGCAGCGGCGCTGAACACCAT
CGGCCAGCTTTGTGTGAGCTCCAGAATGTGTCCGGCCAAGTATACTCCGA
GAAAGCCAGGAATCGCGCCCACTGTGTTCATCAGGCCAAAGACGCTGCCC
GAATGCAGAGGTGCCAGGTCTTGGGGATTCACTGTTACCGCGTTGTTGTG
GAAGCCCGTGCCGCCAATGATAATGGTCATGCAGATGAGCGCCGTATGGA
AGTCCGAGGTGCGGCTCATCACAAACAGGGCCAGATTCTGAGCGGCAAAG
CAGCAACTTTGGATGACCTTGCGCACCGTCGTCGTGTGCCATTCGCGAGC
GAGTAATCTGGTGGTCAAGTACTTGGCGAATAGCGTGCACGGTGGCAGGG
CAAGCCACGGGATCATGTTCACTACCCAACCCTTGGCGTGTGGAAAGCCG
TCGTGGAAGTATGTAGGCAGCCAGGAGAGTAGCACGAAGAAGCAGTTCAT
CTCGCAGGCGTGAGTCAGCACACAGGCCCAGAAGGACAGCCTACGAAAGT
ATCGCAACCAAGGCACGGCTGACGTCTCTGCCGGACTCTTGTTCGCGCAC
AGTCGGGATGGCGTGGCAATATTAATGATTCGGTTTCGCTCGCCGGCCAT
TGCATAGTAGCGCAGCACCAGCGCCCATGCGATGCCCATCAGTCCTATCA
CCCGGAATACATACGACCAGCCGAAGTAGTCCAGCAGAAAAGATCCCATA
ATCCCAGTCAGAAGAGTACCTAGAGCCGATCCCGCTGTGAGCAGCCCAAA
GAAGCTGCTTCTCTCATTGGGGCACAAATTCTGACTGGTTAGACTAATCA
TGCTAGGAAAGTGCACGCCCTGAAGAGCGCCGTTCAGGATT

BS10080.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15438-PA 1320 CG15438-RA 396..1320 941..17 4625 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
MFS18-RA 1846 CG15438-RA 604..1528 941..17 4625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4446988..4447854 17..883 4335 100 Plus
2L 23513712 2L 4447906..4447966 881..941 305 100 Plus
Blast to na_te.dros performed on 2015-02-01 10:21:49 has no hits.

BS10080.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:48 Download gff for BS10080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15438-PA 396..1320 17..941 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:52 Download gff for BS10080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15438-PA 396..1320 17..941 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:26:39 Download gff for BS10080.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 604..1534 8..941 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:03:32 Download gff for BS10080.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 604..1534 8..941 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:03:32 Download gff for BS10080.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4446980..4447851 8..880 99 <- Plus
2L 4447906..4447966 881..941 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:26:39 Download gff for BS10080.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4446980..4447851 8..880 99 <- Plus
arm_2L 4447906..4447966 881..941 100   Plus

BS10080.5prime Sequence

907 bp (772 high quality bases) assembled on 2006-04-19

> BS10080.5prime
GAAGTTATCAGTCGACATGGACGAGAAGCTAAAATATTCTCTGCTGCGCG
GGGAACTGGTGGACACGCAGAGCATTTGGACCAGGCATGAGAAGCGTGTC
TGGTTCATCACCCTTATTACGGGCACCTGTATGCTGTACTCCACCCGCAC
CACTATGCCACTTCTTGTGCCGGCCGTGGCATCCGCCCAAAAGTGGAGCA
AAACCGACTCGGGCACTGTGCTCAGCTCCTTCTTCTGGGGCTACACACTC
ACGCAGGTTGTGGGCGGCTACTTCAGCGACCGCTTTGGAGGCCAGCGAGT
CATTCTGTTTGCCGCAATCGGCTGGTCGCTTATCACATTCCTAATGCCCA
CTATCATCTGGACGGCGGGCTCCATCAAGAGTTACGCTATTCCCTTCATT
GTTGCCATTCGAATCCTGAACGGCGCTCTTCAGGGCGTGCACTTTCCTAG
CATGATTAGTCTAACCAGTCAGAATTTGTGCCCCAATGAGAGAAGCAGCT
TCTTTGGGCTGCTCACAGCGGGATCGGCTCTAGGTACTCTTCTGACTGGG
ATTATGGGATCTTTTCTGCTGGACTACTTCGGCTGGTCGTATGTATTCCG
GGTGATAGGACTGATGGGCATCGCATGGGCGCTGGTGCTGCGCTACTATG
CAATGGCCGGCGAGCGAAACCGAATCATTAATATTGCCACGCCATCCCGA
CTGTGCGCGAACAAGAGTCCGGCAGAGACGTCAGCCGTGCCTTGGTTGCG
ATACTTTCGTAGGCTGTCCTTCTGGGCCTGTGTGCTGACTCACGCCTGCG
AGATGAACTGCTTCTTCGTGCTACTCTCCTGGCTGCCTACATACTTTCAC
GACGGCTTTCCACACGCCAAGGGTTGGGTAGTGAACATGATCCCGTGGCT
TGCCTGC

BS10080.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15438-PA 1320 CG15438-RA 1..888 17..904 4415 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
MFS18-RA 1846 CG15438-RA 208..1096 16..904 4430 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4447420..4447854 904..470 2160 99.8 Minus
2L 23513712 2L 4447906..4448296 472..82 1955 100 Minus
2L 23513712 2L 4448359..4448428 85..16 350 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:52:53 has no hits.

BS10080.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:49 Download gff for BS10080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15438-PA 1..892 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:54 Download gff for BS10080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15438-PA 1..892 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:19 Download gff for BS10080.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 203..1100 11..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:20:15 Download gff for BS10080.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 203..1100 11..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:20:15 Download gff for BS10080.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4447416..4447851 473..907 99 <- Minus
2L 4447906..4448293 85..472 100 <- Minus
2L 4448360..4448433 11..84 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:19 Download gff for BS10080.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4447416..4447851 473..907 99 <- Minus
arm_2L 4447906..4448293 85..472 100 <- Minus
arm_2L 4448360..4448433 11..84 97   Minus

BS10080.complete Sequence

1352 bp (1352 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636555

> BS10080.complete
GAAGTTATCAGTCGACATGGACGAGAAGCTAAAATATTCTCTGCTGCGCG
GGGAACTGGTGGACACGCAGAGCATTTGGACCAGGCATGAGAAGCGTGTC
TGGTTCATCACCCTTATTACGGGCACCTGTATGCTGTACTCCACCCGCAC
CACTATGCCACTTCTTGTGCCGGCCGTGGCATCCGCCCAAAAGTGGAGCA
AAACCGACTCGGGCACTGTGCTCAGCTCCTTCTTCTGGGGCTACACACTC
ACGCAGGTTGTGGGCGGCTACTTCAGCGACCGCTTTGGAGGCCAGCGAGT
CATTCTGTTTGCCGCAATCGGCTGGTCGCTTATCACATTCCTAATGCCCA
CTATCATCTGGACGGCGGGCTCCATCAAGAGTTACGCTATTCCCTTCATT
GTTGCCATTCGAATCCTGAACGGCGCTCTTCAGGGCGTGCACTTTCCTAG
CATGATTAGTCTAACCAGTCAGAATTTGTGCCCCAATGAGAGAAGCAGCT
TCTTTGGGCTGCTCACAGCGGGATCGGCTCTAGGTACTCTTCTGACTGGG
ATTATGGGATCTTTTCTGCTGGACTACTTCGGCTGGTCGTATGTATTCCG
GGTGATAGGACTGATGGGCATCGCATGGGCGCTGGTGCTGCGCTACTATG
CAATGGCCGGCGAGCGAAACCGAATCATTAATATTGCCACGCCATCCCGA
CTGTGCGCGAACAAGAGTCCGGCAGAGACGTCAGCCGTGCCTTGGTTGCG
ATACTTTCGTAGGCTGTCCTTCTGGGCCTGTGTGCTGACTCACGCCTGCG
AGATGAACTGCTTCTTCGTGCTACTCTCCTGGCTGCCTACATACTTCCAC
GACGGCTTTCCACACGCCAAGGGTTGGGTAGTGAACATGATCCCGTGGCT
TGCCCTGCCACCGTGCACGCTATTCGCCAAGTACTTGACCACCAGATTAC
TCGCTCGCGAATGGCACACGACGACGGTGCGCAAGGTCATCCAAAGTTGC
TGCTTTGCCGCTCAGAATCTGGCCCTGTTTGTGATGAGCCGCACCTCGGA
CTTCCATACGGCGCTCATCTGCATGACCATTATCATTGGCGGCACGGGCT
TCCACAACAACGCGGTAACAGTGAATCCCCAAGACCTGGCACCTCTGCAT
TCGGGCAGCGTCTTTGGCCTGATGAACACAGTGGGCGCGATTCCTGGCTT
TCTCGGAGTATACTTGGCCGGACACATTCTGGAGCTCACACAAAGCTGGC
CGATGGTGTTCAGCGCCGCTGCTGGCATCAATTTGGTTGGCTGGATCATA
TTTATAGTCTTTGGTTCGGCGGAAGCCATCGTTTAAAAGCTTTCTAGACC
AT

BS10080.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
MFS18-RA 1320 CG15438-PA 1..1320 17..1336 6600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
MFS18-RA 1846 CG15438-RA 208..1528 16..1336 6605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4446988..4447854 1336..470 4335 100 Minus
2L 23513712 2L 4447906..4448296 472..82 1955 100 Minus
2L 23513712 2L 4448359..4448428 85..16 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 21:04:45 has no hits.

BS10080.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:17 Download gff for BS10080.complete
Subject Subject Range Query Range Percent Splice Strand
CG15438-RA 1..1320 17..1336 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:56 Download gff for BS10080.complete
Subject Subject Range Query Range Percent Splice Strand
CG15438-RA 205..1536 11..1345 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:15 Download gff for BS10080.complete
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 209..1526 17..1334 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:17 Download gff for BS10080.complete
Subject Subject Range Query Range Percent Splice Strand
CG15438-RA 205..1536 11..1345 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:13 Download gff for BS10080.complete
Subject Subject Range Query Range Percent Splice Strand
MFS18-RA 209..1526 17..1334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:13 Download gff for BS10080.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4446990..4447851 473..1334 100 <- Minus
2L 4447906..4448293 85..472 100 <- Minus
2L 4448360..4448427 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:15 Download gff for BS10080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4446990..4447851 473..1334 100 <- Minus
arm_2L 4447906..4448293 85..472 100 <- Minus
arm_2L 4448360..4448427 17..84 100   Minus

BS10080.pep Sequence

Translation from 16 to 1335

> BS10080.pep
MDEKLKYSLLRGELVDTQSIWTRHEKRVWFITLITGTCMLYSTRTTMPLL
VPAVASAQKWSKTDSGTVLSSFFWGYTLTQVVGGYFSDRFGGQRVILFAA
IGWSLITFLMPTIIWTAGSIKSYAIPFIVAIRILNGALQGVHFPSMISLT
SQNLCPNERSSFFGLLTAGSALGTLLTGIMGSFLLDYFGWSYVFRVIGLM
GIAWALVLRYYAMAGERNRIINIATPSRLCANKSPAETSAVPWLRYFRRL
SFWACVLTHACEMNCFFVLLSWLPTYFHDGFPHAKGWVVNMIPWLALPPC
TLFAKYLTTRLLAREWHTTTVRKVIQSCCFAAQNLALFVMSRTSDFHTAL
ICMTIIIGGTGFHNNAVTVNPQDLAPLHSGSVFGLMNTVGAIPGFLGVYL
AGHILELTQSWPMVFSAAAGINLVGWIIFIVFGSAEAIV*

BS10080.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
MFS18-PA 439 CG15438-PA 1..439 1..439 2325 100 Plus
CG4288-PA 502 CG4288-PA 22..464 13..436 432 26.4 Plus
CG4288-PB 502 CG4288-PB 22..464 13..436 432 26.4 Plus
CG15096-PC 491 CG15096-PC 13..467 1..435 361 25.2 Plus
CG15096-PA 491 CG15096-PA 13..467 1..435 361 25.2 Plus