Clone Sequence Records
BS10080.3prime Sequence
941 bp (784 high quality bases) assembled on 2006-04-19
> BS10080.3prime
ATGGTCTAGAAAGCTTTTAAACGATGGCTTCCGCCGAACCAAAGACTATA
AATATGATCCAGCCAACCAAATTGATGCCAGCAGCGGCGCTGAACACCAT
CGGCCAGCTTTGTGTGAGCTCCAGAATGTGTCCGGCCAAGTATACTCCGA
GAAAGCCAGGAATCGCGCCCACTGTGTTCATCAGGCCAAAGACGCTGCCC
GAATGCAGAGGTGCCAGGTCTTGGGGATTCACTGTTACCGCGTTGTTGTG
GAAGCCCGTGCCGCCAATGATAATGGTCATGCAGATGAGCGCCGTATGGA
AGTCCGAGGTGCGGCTCATCACAAACAGGGCCAGATTCTGAGCGGCAAAG
CAGCAACTTTGGATGACCTTGCGCACCGTCGTCGTGTGCCATTCGCGAGC
GAGTAATCTGGTGGTCAAGTACTTGGCGAATAGCGTGCACGGTGGCAGGG
CAAGCCACGGGATCATGTTCACTACCCAACCCTTGGCGTGTGGAAAGCCG
TCGTGGAAGTATGTAGGCAGCCAGGAGAGTAGCACGAAGAAGCAGTTCAT
CTCGCAGGCGTGAGTCAGCACACAGGCCCAGAAGGACAGCCTACGAAAGT
ATCGCAACCAAGGCACGGCTGACGTCTCTGCCGGACTCTTGTTCGCGCAC
AGTCGGGATGGCGTGGCAATATTAATGATTCGGTTTCGCTCGCCGGCCAT
TGCATAGTAGCGCAGCACCAGCGCCCATGCGATGCCCATCAGTCCTATCA
CCCGGAATACATACGACCAGCCGAAGTAGTCCAGCAGAAAAGATCCCATA
ATCCCAGTCAGAAGAGTACCTAGAGCCGATCCCGCTGTGAGCAGCCCAAA
GAAGCTGCTTCTCTCATTGGGGCACAAATTCTGACTGGTTAGACTAATCA
TGCTAGGAAAGTGCACGCCCTGAAGAGCGCCGTTCAGGATT
BS10080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15438-PA | 1320 | CG15438-RA | 396..1320 | 941..17 | 4625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS18-RA | 1846 | CG15438-RA | 604..1528 | 941..17 | 4625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4446988..4447854 | 17..883 | 4335 | 100 | Plus |
2L | 23513712 | 2L | 4447906..4447966 | 881..941 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 10:21:49 has no hits.
BS10080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:48 Download gff for
BS10080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-PA | 396..1320 | 17..941 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:52 Download gff for
BS10080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-PA | 396..1320 | 17..941 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:26:39 Download gff for
BS10080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 604..1534 | 8..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:03:32 Download gff for
BS10080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 604..1534 | 8..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:03:32 Download gff for
BS10080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4446980..4447851 | 8..880 | 99 | <- | Plus |
2L | 4447906..4447966 | 881..941 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:26:39 Download gff for
BS10080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4446980..4447851 | 8..880 | 99 | <- | Plus |
arm_2L | 4447906..4447966 | 881..941 | 100 | | Plus |
BS10080.5prime Sequence
907 bp (772 high quality bases) assembled on 2006-04-19
> BS10080.5prime
GAAGTTATCAGTCGACATGGACGAGAAGCTAAAATATTCTCTGCTGCGCG
GGGAACTGGTGGACACGCAGAGCATTTGGACCAGGCATGAGAAGCGTGTC
TGGTTCATCACCCTTATTACGGGCACCTGTATGCTGTACTCCACCCGCAC
CACTATGCCACTTCTTGTGCCGGCCGTGGCATCCGCCCAAAAGTGGAGCA
AAACCGACTCGGGCACTGTGCTCAGCTCCTTCTTCTGGGGCTACACACTC
ACGCAGGTTGTGGGCGGCTACTTCAGCGACCGCTTTGGAGGCCAGCGAGT
CATTCTGTTTGCCGCAATCGGCTGGTCGCTTATCACATTCCTAATGCCCA
CTATCATCTGGACGGCGGGCTCCATCAAGAGTTACGCTATTCCCTTCATT
GTTGCCATTCGAATCCTGAACGGCGCTCTTCAGGGCGTGCACTTTCCTAG
CATGATTAGTCTAACCAGTCAGAATTTGTGCCCCAATGAGAGAAGCAGCT
TCTTTGGGCTGCTCACAGCGGGATCGGCTCTAGGTACTCTTCTGACTGGG
ATTATGGGATCTTTTCTGCTGGACTACTTCGGCTGGTCGTATGTATTCCG
GGTGATAGGACTGATGGGCATCGCATGGGCGCTGGTGCTGCGCTACTATG
CAATGGCCGGCGAGCGAAACCGAATCATTAATATTGCCACGCCATCCCGA
CTGTGCGCGAACAAGAGTCCGGCAGAGACGTCAGCCGTGCCTTGGTTGCG
ATACTTTCGTAGGCTGTCCTTCTGGGCCTGTGTGCTGACTCACGCCTGCG
AGATGAACTGCTTCTTCGTGCTACTCTCCTGGCTGCCTACATACTTTCAC
GACGGCTTTCCACACGCCAAGGGTTGGGTAGTGAACATGATCCCGTGGCT
TGCCTGC
BS10080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15438-PA | 1320 | CG15438-RA | 1..888 | 17..904 | 4415 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS18-RA | 1846 | CG15438-RA | 208..1096 | 16..904 | 4430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4447420..4447854 | 904..470 | 2160 | 99.8 | Minus |
2L | 23513712 | 2L | 4447906..4448296 | 472..82 | 1955 | 100 | Minus |
2L | 23513712 | 2L | 4448359..4448428 | 85..16 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:52:53 has no hits.
BS10080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:49 Download gff for
BS10080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-PA | 1..892 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:54 Download gff for
BS10080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-PA | 1..892 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:17:19 Download gff for
BS10080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 203..1100 | 11..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:20:15 Download gff for
BS10080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 203..1100 | 11..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:20:15 Download gff for
BS10080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4447416..4447851 | 473..907 | 99 | <- | Minus |
2L | 4447906..4448293 | 85..472 | 100 | <- | Minus |
2L | 4448360..4448433 | 11..84 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:17:19 Download gff for
BS10080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4447416..4447851 | 473..907 | 99 | <- | Minus |
arm_2L | 4447906..4448293 | 85..472 | 100 | <- | Minus |
arm_2L | 4448360..4448433 | 11..84 | 97 | | Minus |
BS10080.complete Sequence
1352 bp (1352 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636555
> BS10080.complete
GAAGTTATCAGTCGACATGGACGAGAAGCTAAAATATTCTCTGCTGCGCG
GGGAACTGGTGGACACGCAGAGCATTTGGACCAGGCATGAGAAGCGTGTC
TGGTTCATCACCCTTATTACGGGCACCTGTATGCTGTACTCCACCCGCAC
CACTATGCCACTTCTTGTGCCGGCCGTGGCATCCGCCCAAAAGTGGAGCA
AAACCGACTCGGGCACTGTGCTCAGCTCCTTCTTCTGGGGCTACACACTC
ACGCAGGTTGTGGGCGGCTACTTCAGCGACCGCTTTGGAGGCCAGCGAGT
CATTCTGTTTGCCGCAATCGGCTGGTCGCTTATCACATTCCTAATGCCCA
CTATCATCTGGACGGCGGGCTCCATCAAGAGTTACGCTATTCCCTTCATT
GTTGCCATTCGAATCCTGAACGGCGCTCTTCAGGGCGTGCACTTTCCTAG
CATGATTAGTCTAACCAGTCAGAATTTGTGCCCCAATGAGAGAAGCAGCT
TCTTTGGGCTGCTCACAGCGGGATCGGCTCTAGGTACTCTTCTGACTGGG
ATTATGGGATCTTTTCTGCTGGACTACTTCGGCTGGTCGTATGTATTCCG
GGTGATAGGACTGATGGGCATCGCATGGGCGCTGGTGCTGCGCTACTATG
CAATGGCCGGCGAGCGAAACCGAATCATTAATATTGCCACGCCATCCCGA
CTGTGCGCGAACAAGAGTCCGGCAGAGACGTCAGCCGTGCCTTGGTTGCG
ATACTTTCGTAGGCTGTCCTTCTGGGCCTGTGTGCTGACTCACGCCTGCG
AGATGAACTGCTTCTTCGTGCTACTCTCCTGGCTGCCTACATACTTCCAC
GACGGCTTTCCACACGCCAAGGGTTGGGTAGTGAACATGATCCCGTGGCT
TGCCCTGCCACCGTGCACGCTATTCGCCAAGTACTTGACCACCAGATTAC
TCGCTCGCGAATGGCACACGACGACGGTGCGCAAGGTCATCCAAAGTTGC
TGCTTTGCCGCTCAGAATCTGGCCCTGTTTGTGATGAGCCGCACCTCGGA
CTTCCATACGGCGCTCATCTGCATGACCATTATCATTGGCGGCACGGGCT
TCCACAACAACGCGGTAACAGTGAATCCCCAAGACCTGGCACCTCTGCAT
TCGGGCAGCGTCTTTGGCCTGATGAACACAGTGGGCGCGATTCCTGGCTT
TCTCGGAGTATACTTGGCCGGACACATTCTGGAGCTCACACAAAGCTGGC
CGATGGTGTTCAGCGCCGCTGCTGGCATCAATTTGGTTGGCTGGATCATA
TTTATAGTCTTTGGTTCGGCGGAAGCCATCGTTTAAAAGCTTTCTAGACC
AT
BS10080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS18-RA | 1320 | CG15438-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS18-RA | 1846 | CG15438-RA | 208..1528 | 16..1336 | 6605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4446988..4447854 | 1336..470 | 4335 | 100 | Minus |
2L | 23513712 | 2L | 4447906..4448296 | 472..82 | 1955 | 100 | Minus |
2L | 23513712 | 2L | 4448359..4448428 | 85..16 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:04:45 has no hits.
BS10080.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:17 Download gff for
BS10080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-RA | 1..1320 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:56 Download gff for
BS10080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-RA | 205..1536 | 11..1345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:15 Download gff for
BS10080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 209..1526 | 17..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:17 Download gff for
BS10080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15438-RA | 205..1536 | 11..1345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:13 Download gff for
BS10080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS18-RA | 209..1526 | 17..1334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:13 Download gff for
BS10080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4446990..4447851 | 473..1334 | 100 | <- | Minus |
2L | 4447906..4448293 | 85..472 | 100 | <- | Minus |
2L | 4448360..4448427 | 17..84 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:15 Download gff for
BS10080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4446990..4447851 | 473..1334 | 100 | <- | Minus |
arm_2L | 4447906..4448293 | 85..472 | 100 | <- | Minus |
arm_2L | 4448360..4448427 | 17..84 | 100 | | Minus |
BS10080.pep Sequence
Translation from 16 to 1335
> BS10080.pep
MDEKLKYSLLRGELVDTQSIWTRHEKRVWFITLITGTCMLYSTRTTMPLL
VPAVASAQKWSKTDSGTVLSSFFWGYTLTQVVGGYFSDRFGGQRVILFAA
IGWSLITFLMPTIIWTAGSIKSYAIPFIVAIRILNGALQGVHFPSMISLT
SQNLCPNERSSFFGLLTAGSALGTLLTGIMGSFLLDYFGWSYVFRVIGLM
GIAWALVLRYYAMAGERNRIINIATPSRLCANKSPAETSAVPWLRYFRRL
SFWACVLTHACEMNCFFVLLSWLPTYFHDGFPHAKGWVVNMIPWLALPPC
TLFAKYLTTRLLAREWHTTTVRKVIQSCCFAAQNLALFVMSRTSDFHTAL
ICMTIIIGGTGFHNNAVTVNPQDLAPLHSGSVFGLMNTVGAIPGFLGVYL
AGHILELTQSWPMVFSAAAGINLVGWIIFIVFGSAEAIV*
BS10080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS18-PA | 439 | CG15438-PA | 1..439 | 1..439 | 2325 | 100 | Plus |
CG4288-PA | 502 | CG4288-PA | 22..464 | 13..436 | 432 | 26.4 | Plus |
CG4288-PB | 502 | CG4288-PB | 22..464 | 13..436 | 432 | 26.4 | Plus |
CG15096-PC | 491 | CG15096-PC | 13..467 | 1..435 | 361 | 25.2 | Plus |
CG15096-PA | 491 | CG15096-PA | 13..467 | 1..435 | 361 | 25.2 | Plus |