Clone Sequence Records
BS10081.3prime Sequence
870 bp (819 high quality bases) assembled on 2006-04-19
> BS10081.3prime
ATGGTCTAGAAAGCTTCTACTTGCCCTTTTTCGACTCCTTCTTTTTGCTG
CCGGACGAGCTGACGCCCTCGTCCTTCTCCTTCTTCTCCTTCTTTTCGGG
CTTCTCCTCGGGATGATCTTCATAGGCAAAGAGCACCTTCAGCTCGCCGC
GGATGAGGGCCACCAGGAGGGGCGTGCCCATGCAGGCTGGCACCAGGTAG
AGCAGAGCCGGCTGCGCATGCTTGAACACATGCATCACGAAGATGGTGGC
CAGCAGGCCAAGGAAGTAGGCAATCAGCGTGGAGTAGAAGTAGATGCGCG
TCTTGCGCTTCTTGCTGTCGTCGAAGCGCAGCAGCAGAGCGATGAAGATG
CCCGGAATAACGATGTCGCCTAGTCCCAGCATTGCGAAGTTCGAGGCGTT
CAGGCCGTTCTCGATCAGGTCCTGGGGGAACACTAGCTTGATGGGCGCCT
CGAAGCTCTTGGCCACGGTGACCATCACGTTGGTGCCGAATACCCAGAAG
ATGTCGTAGAAGAACAGGCCGCTCAGCAAGATGACGCCCGTGACGAAGTT
GTTCAGGTGCAGCATCTCCACGCCGTTGATGGCGAAGGCCAGACCGAACA
GATTGTTGGCGATCCAGTGCTTCTTGAGCAGGTACCACACTCCGATCGCC
GAGGAGATCACCAGGCAGACAATGTCGTGCGTGGAGAACTTGTAGTTAAC
GATGTCTTCCTTGTGCTTGCCCTCCCCCTTAGTGAACAGGATGTGGAAGG
GCACCTTCGGCACGGCGGCGGGCATCAGCGAGTTGATCACCGGACTGAGC
AGGTGCGCCAGAGCAATAACTCCCAGCACGAAGAAGTAGCCGGTGAGCAG
GTAGTTGATGTGCACCTTCT
BS10081.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11840-PA | 1170 | Spp-RA | 317..1170 | 870..17 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spp-RA | 1736 | CG11840-RA | 428..1282 | 870..16 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 543416..544160 | 126..870 | 3725 | 100 | Plus |
2L | 23513712 | 2L | 543240..543349 | 16..125 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:55:35 has no hits.
BS10081.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:50 Download gff for
BS10081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spp-PA | 317..1170 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:55 Download gff for
BS10081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11840-PA | 317..1170 | 17..870 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:44 Download gff for
BS10081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spp-RA | 428..1284 | 13..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:53 Download gff for
BS10081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spp-RA | 428..1284 | 13..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:53 Download gff for
BS10081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 543238..543349 | 13..125 | 99 | <- | Plus |
2L | 543416..544160 | 126..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:44 Download gff for
BS10081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 543238..543349 | 13..125 | 99 | <- | Plus |
arm_2L | 543416..544160 | 126..870 | 100 | | Plus |
BS10081.5prime Sequence
952 bp (774 high quality bases) assembled on 2006-04-19
> BS10081.5prime
GAAGTTATCAGTCGACATGGCGGAGGAAGTCATCGGAACCGTTAAGGAGG
TGCTGAAGGGCATCATCGAGAATGTGAACGCGCCGAAGAACGAGTCGGCG
CCGGGCGAGAAGAAGCCCTCGACTCCGGAGGGCATGGCGGTGGCCTACAG
CAGCCTGGTGGTGATGGCCATGCTGCCCATCATCTTCGGCTCCATCCGCT
CCGTGAAGCTGCACAAGCTGAAGAAGTCAACGGGCGAGAAGGCGGACACG
ATGACCAAGAAGGACGCCATGTACTTCCCGCTGATCGCGTCGGCAGCCCT
CTTCGGGCTGTACCTGTTCTTCAAGATCTTCCAGAAGGTGCACATCAACT
ACCTGCTCACCGGCTACTTCTTCGTGCTGGGAGTTATTGCTCTGGCGCAC
CTGCTCAGTCCGGTGATCAACTCGCTGATGCCCGCCGCCGTGCCGAAGGT
GCCCTTCCACATCCTGTTCACTAAGGGGGAGGGCAAGCACAAGGAAGACA
TCGTTAACTACAAGTTCTCCACGCACGACATTGTCTGCCTGGTGATCTCC
TCGGCGATCGGAGTGTGGTACCTGCTCAAGAAGCACTGGATCGCCAACAA
TCTGTTCGGTCTGGCCTTCGCCATCAACGGCGTGGAGATGCTGCACCTGA
ACAACTTCGTCACGGGCGTCATCTTGCTGAGCGGCCTGTTCTTCTACGAC
ATCTTCTGGGTATTCGGCACCAACGTGATGGTCACCGTGGCCAAGAGCTT
CGAGGCGCCCATCAAGCTAGTGTTCCCCCAGGACCTGATCGAGAACGGCC
TGAACGCCTCGAACTTCGCAATGCTGGGACTAGGCGACATCGTTATTCCG
GGCATCTTCATCGCTCTGCTGCTGCGCTTCGACGACAGCAAGAAGCGCAA
GACGCGCATCTACTTCTACTCCACGCTGATTGCCCTACTCCTTGGCCTGC
TG
BS10081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11840-PA | 1170 | Spp-RA | 1..918 | 17..934 | 4565 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spp-RA | 1736 | CG11840-RA | 111..1047 | 16..952 | 4625 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 543541..544268 | 952..225 | 3565 | 99.3 | Minus |
2L | 23513712 | 2L | 544333..544543 | 226..16 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:30:26 has no hits.
BS10081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:51 Download gff for
BS10081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spp-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:56 Download gff for
BS10081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11840-PA | 1..936 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:38:00 Download gff for
BS10081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spp-RA | 103..1047 | 9..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:50 Download gff for
BS10081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spp-RA | 103..1047 | 9..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:50 Download gff for
BS10081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 543541..544266 | 227..952 | 99 | <- | Minus |
2L | 544333..544546 | 9..226 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:38:00 Download gff for
BS10081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 544333..544546 | 9..226 | 98 | | Minus |
arm_2L | 543541..544266 | 227..952 | 99 | <- | Minus |
BS10081.complete Sequence
1202 bp (1202 high quality bases) assembled on 2006-03-25
> BS10081.complete
GAAGTTATCAGTCGACATGGCGGAGGAAGTCATCGGAACCGTTAAGGAGG
TGCTGAAGGGCATCATCGAGAATGTGAACGCGCCGAAGAACGAGTCGGCG
CCGGGCGAGAAGAAGCCCTCGACTCCGGAGGGCATGGCGGTGGCCTACAG
CAGCCTGGTGGTGATGGCCATGCTGCCCATCATCTTCGGCTCCATCCGCT
CCGTGAAGCTGCACAAGCTGAAGAAGTCAACGGGCGAGAAGGCGGACACG
ATGACCAAGAAGGACGCCATGTACTTCCCGCTGATCGCGTCGGCAGCCCT
CTTCGGGCTGTACCTGTTCTTCAAGATCTTCCAGAAGGTGCACATCAACT
ACCTGCTCACCGGCTACTTCTTCGTGCTGGGAGTTATTGCTCTGGCGCAC
CTGCTCAGTCCGGTGATCAACTCGCTGATGCCCGCCGCCGTGCCGAAGGT
GCCCTTCCACATCCTGTTCACTAAGGGGGAGGGCAAGCACAAGGAAGACA
TCGTTAACTACAAGTTCTCCACGCACGACATTGTCTGCCTGGTGATCTCC
TCGGCGATCGGAGTGTGGTACCTGCTCAAGAAGCACTGGATCGCCAACAA
TCTGTTCGGTCTGGCCTTCGCCATCAACGGCGTGGAGATGCTGCACCTGA
ACAACTTCGTCACGGGCGTCATCTTGCTGAGCGGCCTGTTCTTCTACGAC
ATCTTCTGGGTATTCGGCACCAACGTGATGGTCACCGTGGCCAAGAGCTT
CGAGGCGCCCATCAAGCTAGTGTTCCCCCAGGACCTGATCGAGAACGGCC
TGAACGCCTCGAACTTCGCAATGCTGGGACTAGGCGACATCGTTATTCCG
GGCATCTTCATCGCTCTGCTGCTGCGCTTCGACGACAGCAAGAAGCGCAA
GACGCGCATCTACTTCTACTCCACGCTGATTGCCTACTTCCTTGGCCTGC
TGGCCACCATCTTCGTGATGCATGTGTTCAAGCATGCGCAGCCGGCTCTG
CTCTACCTGGTGCCAGCCTGCATGGGCACGCCCCTCCTGGTGGCCCTCAT
CCGCGGCGAGCTGAAGGTGCTCTTTGCCTATGAAGATCATCCCGAGGAGA
AGCCCGAAAAGAAGGAGAAGAAGGAGAAGGACGAGGGCGTCAGCTCGTCC
GGCAGCAAAAAGAAGGAGTCGAAAAAGGGCAAGTAGAAGCTTTCTAGACC
AT
BS10081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spp-RA | 1170 | CG11840-PA | 1..1170 | 17..1186 | 5835 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spp-RA | 1736 | CG11840-RA | 111..1282 | 16..1187 | 5845 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 543416..544268 | 1077..225 | 4250 | 99.9 | Minus |
2L | 23513712 | 2L | 544333..544543 | 226..16 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 543240..543349 | 1187..1078 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:23:08 has no hits.
BS10081.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:18 Download gff for
BS10081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spp-RA | 1..1170 | 17..1186 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:58 Download gff for
BS10081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spp-RA | 77..1258 | 9..1190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:11 Download gff for
BS10081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spp-RA | 112..1281 | 17..1186 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:18 Download gff for
BS10081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spp-RA | 77..1258 | 9..1190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:33 Download gff for
BS10081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spp-RA | 112..1281 | 17..1186 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:33 Download gff for
BS10081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 543241..543349 | 1078..1186 | 100 | <- | Minus |
2L | 543416..544266 | 227..1077 | 99 | <- | Minus |
2L | 544333..544542 | 17..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:11 Download gff for
BS10081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 543241..543349 | 1078..1186 | 100 | <- | Minus |
arm_2L | 543416..544266 | 227..1077 | 99 | <- | Minus |
arm_2L | 544333..544542 | 17..226 | 100 | | Minus |
BS10081.pep Sequence
Translation from 16 to 1185
> BS10081.pep
MAEEVIGTVKEVLKGIIENVNAPKNESAPGEKKPSTPEGMAVAYSSLVVM
AMLPIIFGSIRSVKLHKLKKSTGEKADTMTKKDAMYFPLIASAALFGLYL
FFKIFQKVHINYLLTGYFFVLGVIALAHLLSPVINSLMPAAVPKVPFHIL
FTKGEGKHKEDIVNYKFSTHDIVCLVISSAIGVWYLLKKHWIANNLFGLA
FAINGVEMLHLNNFVTGVILLSGLFFYDIFWVFGTNVMVTVAKSFEAPIK
LVFPQDLIENGLNASNFAMLGLGDIVIPGIFIALLLRFDDSKKRKTRIYF
YSTLIAYFLGLLATIFVMHVFKHAQPALLYLVPACMGTPLLVALIRGELK
VLFAYEDHPEEKPEKKEKKEKDEGVSSSGSKKKESKKGK*
BS10081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spp-PA | 389 | CG11840-PA | 1..389 | 1..389 | 1983 | 100 | Plus |
SppL-PF | 417 | CG17370-PF | 49..414 | 46..366 | 335 | 27.9 | Plus |
SppL-PC | 417 | CG17370-PC | 49..414 | 46..366 | 335 | 27.9 | Plus |
SppL-PB | 417 | CG17370-PB | 49..414 | 46..366 | 335 | 27.9 | Plus |
SppL-PA | 417 | CG17370-PA | 49..414 | 46..366 | 335 | 27.9 | Plus |