Clone BS10081 Report

Search the DGRC for BS10081

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptSpp-RA
Protein status:BS10081.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10081.3prime Sequence

870 bp (819 high quality bases) assembled on 2006-04-19

> BS10081.3prime
ATGGTCTAGAAAGCTTCTACTTGCCCTTTTTCGACTCCTTCTTTTTGCTG
CCGGACGAGCTGACGCCCTCGTCCTTCTCCTTCTTCTCCTTCTTTTCGGG
CTTCTCCTCGGGATGATCTTCATAGGCAAAGAGCACCTTCAGCTCGCCGC
GGATGAGGGCCACCAGGAGGGGCGTGCCCATGCAGGCTGGCACCAGGTAG
AGCAGAGCCGGCTGCGCATGCTTGAACACATGCATCACGAAGATGGTGGC
CAGCAGGCCAAGGAAGTAGGCAATCAGCGTGGAGTAGAAGTAGATGCGCG
TCTTGCGCTTCTTGCTGTCGTCGAAGCGCAGCAGCAGAGCGATGAAGATG
CCCGGAATAACGATGTCGCCTAGTCCCAGCATTGCGAAGTTCGAGGCGTT
CAGGCCGTTCTCGATCAGGTCCTGGGGGAACACTAGCTTGATGGGCGCCT
CGAAGCTCTTGGCCACGGTGACCATCACGTTGGTGCCGAATACCCAGAAG
ATGTCGTAGAAGAACAGGCCGCTCAGCAAGATGACGCCCGTGACGAAGTT
GTTCAGGTGCAGCATCTCCACGCCGTTGATGGCGAAGGCCAGACCGAACA
GATTGTTGGCGATCCAGTGCTTCTTGAGCAGGTACCACACTCCGATCGCC
GAGGAGATCACCAGGCAGACAATGTCGTGCGTGGAGAACTTGTAGTTAAC
GATGTCTTCCTTGTGCTTGCCCTCCCCCTTAGTGAACAGGATGTGGAAGG
GCACCTTCGGCACGGCGGCGGGCATCAGCGAGTTGATCACCGGACTGAGC
AGGTGCGCCAGAGCAATAACTCCCAGCACGAAGAAGTAGCCGGTGAGCAG
GTAGTTGATGTGCACCTTCT

BS10081.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11840-PA 1170 Spp-RA 317..1170 870..17 4270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
Spp-RA 1736 CG11840-RA 428..1282 870..16 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 543416..544160 126..870 3725 100 Plus
2L 23513712 2L 543240..543349 16..125 550 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:55:35 has no hits.

BS10081.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:50 Download gff for BS10081.3prime
Subject Subject Range Query Range Percent Splice Strand
Spp-PA 317..1170 17..870 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:55 Download gff for BS10081.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11840-PA 317..1170 17..870 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:44 Download gff for BS10081.3prime
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 428..1284 13..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:53 Download gff for BS10081.3prime
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 428..1284 13..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:53 Download gff for BS10081.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 543238..543349 13..125 99 <- Plus
2L 543416..544160 126..870 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:44 Download gff for BS10081.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 543238..543349 13..125 99 <- Plus
arm_2L 543416..544160 126..870 100   Plus

BS10081.5prime Sequence

952 bp (774 high quality bases) assembled on 2006-04-19

> BS10081.5prime
GAAGTTATCAGTCGACATGGCGGAGGAAGTCATCGGAACCGTTAAGGAGG
TGCTGAAGGGCATCATCGAGAATGTGAACGCGCCGAAGAACGAGTCGGCG
CCGGGCGAGAAGAAGCCCTCGACTCCGGAGGGCATGGCGGTGGCCTACAG
CAGCCTGGTGGTGATGGCCATGCTGCCCATCATCTTCGGCTCCATCCGCT
CCGTGAAGCTGCACAAGCTGAAGAAGTCAACGGGCGAGAAGGCGGACACG
ATGACCAAGAAGGACGCCATGTACTTCCCGCTGATCGCGTCGGCAGCCCT
CTTCGGGCTGTACCTGTTCTTCAAGATCTTCCAGAAGGTGCACATCAACT
ACCTGCTCACCGGCTACTTCTTCGTGCTGGGAGTTATTGCTCTGGCGCAC
CTGCTCAGTCCGGTGATCAACTCGCTGATGCCCGCCGCCGTGCCGAAGGT
GCCCTTCCACATCCTGTTCACTAAGGGGGAGGGCAAGCACAAGGAAGACA
TCGTTAACTACAAGTTCTCCACGCACGACATTGTCTGCCTGGTGATCTCC
TCGGCGATCGGAGTGTGGTACCTGCTCAAGAAGCACTGGATCGCCAACAA
TCTGTTCGGTCTGGCCTTCGCCATCAACGGCGTGGAGATGCTGCACCTGA
ACAACTTCGTCACGGGCGTCATCTTGCTGAGCGGCCTGTTCTTCTACGAC
ATCTTCTGGGTATTCGGCACCAACGTGATGGTCACCGTGGCCAAGAGCTT
CGAGGCGCCCATCAAGCTAGTGTTCCCCCAGGACCTGATCGAGAACGGCC
TGAACGCCTCGAACTTCGCAATGCTGGGACTAGGCGACATCGTTATTCCG
GGCATCTTCATCGCTCTGCTGCTGCGCTTCGACGACAGCAAGAAGCGCAA
GACGCGCATCTACTTCTACTCCACGCTGATTGCCCTACTCCTTGGCCTGC
TG

BS10081.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11840-PA 1170 Spp-RA 1..918 17..934 4565 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Spp-RA 1736 CG11840-RA 111..1047 16..952 4625 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 543541..544268 952..225 3565 99.3 Minus
2L 23513712 2L 544333..544543 226..16 1055 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:30:26 has no hits.

BS10081.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:51 Download gff for BS10081.5prime
Subject Subject Range Query Range Percent Splice Strand
Spp-PA 1..936 17..952 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:45:56 Download gff for BS10081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11840-PA 1..936 17..952 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:38:00 Download gff for BS10081.5prime
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 103..1047 9..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:50 Download gff for BS10081.5prime
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 103..1047 9..952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:50 Download gff for BS10081.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 543541..544266 227..952 99 <- Minus
2L 544333..544546 9..226 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:38:00 Download gff for BS10081.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 544333..544546 9..226 98   Minus
arm_2L 543541..544266 227..952 99 <- Minus

BS10081.complete Sequence

1202 bp (1202 high quality bases) assembled on 2006-03-25

> BS10081.complete
GAAGTTATCAGTCGACATGGCGGAGGAAGTCATCGGAACCGTTAAGGAGG
TGCTGAAGGGCATCATCGAGAATGTGAACGCGCCGAAGAACGAGTCGGCG
CCGGGCGAGAAGAAGCCCTCGACTCCGGAGGGCATGGCGGTGGCCTACAG
CAGCCTGGTGGTGATGGCCATGCTGCCCATCATCTTCGGCTCCATCCGCT
CCGTGAAGCTGCACAAGCTGAAGAAGTCAACGGGCGAGAAGGCGGACACG
ATGACCAAGAAGGACGCCATGTACTTCCCGCTGATCGCGTCGGCAGCCCT
CTTCGGGCTGTACCTGTTCTTCAAGATCTTCCAGAAGGTGCACATCAACT
ACCTGCTCACCGGCTACTTCTTCGTGCTGGGAGTTATTGCTCTGGCGCAC
CTGCTCAGTCCGGTGATCAACTCGCTGATGCCCGCCGCCGTGCCGAAGGT
GCCCTTCCACATCCTGTTCACTAAGGGGGAGGGCAAGCACAAGGAAGACA
TCGTTAACTACAAGTTCTCCACGCACGACATTGTCTGCCTGGTGATCTCC
TCGGCGATCGGAGTGTGGTACCTGCTCAAGAAGCACTGGATCGCCAACAA
TCTGTTCGGTCTGGCCTTCGCCATCAACGGCGTGGAGATGCTGCACCTGA
ACAACTTCGTCACGGGCGTCATCTTGCTGAGCGGCCTGTTCTTCTACGAC
ATCTTCTGGGTATTCGGCACCAACGTGATGGTCACCGTGGCCAAGAGCTT
CGAGGCGCCCATCAAGCTAGTGTTCCCCCAGGACCTGATCGAGAACGGCC
TGAACGCCTCGAACTTCGCAATGCTGGGACTAGGCGACATCGTTATTCCG
GGCATCTTCATCGCTCTGCTGCTGCGCTTCGACGACAGCAAGAAGCGCAA
GACGCGCATCTACTTCTACTCCACGCTGATTGCCTACTTCCTTGGCCTGC
TGGCCACCATCTTCGTGATGCATGTGTTCAAGCATGCGCAGCCGGCTCTG
CTCTACCTGGTGCCAGCCTGCATGGGCACGCCCCTCCTGGTGGCCCTCAT
CCGCGGCGAGCTGAAGGTGCTCTTTGCCTATGAAGATCATCCCGAGGAGA
AGCCCGAAAAGAAGGAGAAGAAGGAGAAGGACGAGGGCGTCAGCTCGTCC
GGCAGCAAAAAGAAGGAGTCGAAAAAGGGCAAGTAGAAGCTTTCTAGACC
AT

BS10081.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Spp-RA 1170 CG11840-PA 1..1170 17..1186 5835 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Spp-RA 1736 CG11840-RA 111..1282 16..1187 5845 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 543416..544268 1077..225 4250 99.9 Minus
2L 23513712 2L 544333..544543 226..16 1055 100 Minus
2L 23513712 2L 543240..543349 1187..1078 550 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:23:08 has no hits.

BS10081.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:18 Download gff for BS10081.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 1..1170 17..1186 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:58 Download gff for BS10081.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 77..1258 9..1190 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:11 Download gff for BS10081.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 112..1281 17..1186 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:18 Download gff for BS10081.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 77..1258 9..1190 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:33 Download gff for BS10081.complete
Subject Subject Range Query Range Percent Splice Strand
Spp-RA 112..1281 17..1186 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:33 Download gff for BS10081.complete
Subject Subject Range Query Range Percent Splice Strand
2L 543241..543349 1078..1186 100 <- Minus
2L 543416..544266 227..1077 99 <- Minus
2L 544333..544542 17..226 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:11 Download gff for BS10081.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 543241..543349 1078..1186 100 <- Minus
arm_2L 543416..544266 227..1077 99 <- Minus
arm_2L 544333..544542 17..226 100   Minus

BS10081.pep Sequence

Translation from 16 to 1185

> BS10081.pep
MAEEVIGTVKEVLKGIIENVNAPKNESAPGEKKPSTPEGMAVAYSSLVVM
AMLPIIFGSIRSVKLHKLKKSTGEKADTMTKKDAMYFPLIASAALFGLYL
FFKIFQKVHINYLLTGYFFVLGVIALAHLLSPVINSLMPAAVPKVPFHIL
FTKGEGKHKEDIVNYKFSTHDIVCLVISSAIGVWYLLKKHWIANNLFGLA
FAINGVEMLHLNNFVTGVILLSGLFFYDIFWVFGTNVMVTVAKSFEAPIK
LVFPQDLIENGLNASNFAMLGLGDIVIPGIFIALLLRFDDSKKRKTRIYF
YSTLIAYFLGLLATIFVMHVFKHAQPALLYLVPACMGTPLLVALIRGELK
VLFAYEDHPEEKPEKKEKKEKDEGVSSSGSKKKESKKGK*

BS10081.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Spp-PA 389 CG11840-PA 1..389 1..389 1983 100 Plus
SppL-PF 417 CG17370-PF 49..414 46..366 335 27.9 Plus
SppL-PC 417 CG17370-PC 49..414 46..366 335 27.9 Plus
SppL-PB 417 CG17370-PB 49..414 46..366 335 27.9 Plus
SppL-PA 417 CG17370-PA 49..414 46..366 335 27.9 Plus