Clone BS10085 Report

Search the DGRC for BS10085

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptRbsn-5-RA
Protein status:BS10085.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10085.3prime Sequence

928 bp (842 high quality bases) assembled on 2006-04-19

> BS10085.3prime
ATGGTCTAGAAAGCTTTTAGGCCTCTGTGGGTGAGGCGGCGGTGCTTCCC
TGGGACTGGCGCTGTCGCTCGTACACTTCGCGCTGTAGCTCGCGAAGATT
TAGCTCCAGCGTCTCCACCACCTCAAAGTTCATGTCCTGGCGAGCCTGTT
TGATGTAGCCCTTAATGATGTTTATCTGCTCGATCAGCGGATCGTCCAGG
CTGGACTTGCTAGCCGCCTGCGGTGCTGACCAGTTGTTCAGAGATTGAAG
ATCAGACCCTTGGGCAAAGGATCCGCTTTCCGGACCAGGAACTCCAACGT
TGGATTGGTTAGCTGCCATGTTATTTCGTTCGTAGGCTTCCATGGCCATG
CGCTGTTCGGTGAGGATACGCTGCTCCGTTTCCATGCGTCTACGCTCCTG
CATCTGGCGTATGTGCGATTCCTCTGGCAGTGGGGGCAGCGATAACATTC
GCTCCTTGATGGCTTGGATGCAGCCCAACCGAATGGCCTTCTTTAATGCC
TCCTCCCGGCTGCCTGGTTCACAAAATATGGCTAGAATGCGCTTGCTCCT
CATGTCCATGGCCTCTGCCACTTGTCCAATCTTGCCGCGCAAAGCACCTG
CATCCGCCAACGTGAAGATTGTGTCCCCTTCGTTCAAGCTATTGATGATC
TTTAGATACATGTCCAGATCCGGGGTAACTTCTTTTTGTAGTTGACGAAT
TTGTTCGTAGACCTGGACGAGGAGTGGGCGACAAGTGCGACTTTCGTGCA
TATCCTTTCGGGTGTCCAGCAGCCAAAGGCAGTGTTCGCACAGCCGGATG
GCGTTCTCATGCTGATGCAGCTGCTGAAGGGGCTCGCTTCTTGTGGTGGA
AAGACTGGCTAGTTGCATGGCATCTTCCAGGGGCAGGAACTTTGGAGCAA
TCATTGCACATTATGCCTCCGCACAAAC

BS10085.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8506-PA 1518 CG8506-RA 643..1518 892..17 4380 100 Minus
CG8506-PA 1518 CG8506-RA 608..644 928..892 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-RA 1846 CG8506-RA 868..1778 928..17 4535 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8160817..8161427 867..257 3055 100 Minus
2L 23513712 2L 8161492..8161732 257..17 1205 100 Minus
2L 23513712 2L 8160699..8160758 928..868 255 98.4 Minus
Blast to na_te.dros performed on 2015-02-10 19:55:32 has no hits.

BS10085.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:59 Download gff for BS10085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8506-PA 608..1518 17..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:05 Download gff for BS10085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8506-PA 608..1518 17..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:42 Download gff for BS10085.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 868..1786 9..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:49 Download gff for BS10085.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 868..1786 9..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:49 Download gff for BS10085.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8160699..8160758 868..928 98 -> Minus
2L 8160817..8161427 257..867 100 -> Minus
2L 8161493..8161740 9..256 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:42 Download gff for BS10085.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8160699..8160758 868..928 98 -> Minus
arm_2L 8160817..8161427 257..867 100 -> Minus
arm_2L 8161493..8161740 9..256 98   Minus

BS10085.5prime Sequence

867 bp (832 high quality bases) assembled on 2006-04-19

> BS10085.5prime
GAAGTTATCAGTCGACATGTCTGGAAATCCTTTCGACAGCGACGAAGATC
AAAGCTCGGCCAGTGGAGAGATACTAGAGGGCTTCCTATGTCCCATTTGC
CGTGCGGATCTCAAGTCCATCGATGTGCTCACGGATCATTTTGCCCGCCA
GCATGCGGAAGAGGAGGATGCCCTAAAATCCTTTAAAGATATCTTTACCA
AGGCGAAAAAGAAGATCCTAAACCCCTTTGAGGATGAAAAAGGTGCATCT
GTATCGTCGCCCGCAGGTTCCTCCTCTTCAGCGGCTGGCAAGAATCCCAA
TGGCAACGGAGATCGCAATGGACCCAGTAATGCCCGCTCCCGTCTAAATG
TATTTAACTATATGGCCAGGCAGCAGCCTGGTGCTGAGTGCTCCCACTTC
GAGTACTTTCAGTCCATTCGCAATCCTCGCCTGGAGCGATATGCCAGCGA
AACAAACAAACTAATCATTCGTTTGCACCGCCTGCTTAAGGATCTGCCAG
CGGATTCAGTGCAGCGGCGTCAGCATGAACAGCAAACAGTTGCCTGGCTG
GATGGTAGTTCCGTCAAGTTGTGTCCCAGTTGTGCCAAGAGTTTCCACAT
CGCCCGAAGACAACACCACTGCCGTTTGTGCGGAGGCATAATGTGCAATG
ATTGCTCCAAGTTCCTGCCCCTGGAAGATGCCATGCAACTAGCCAGTCTT
TCCACCACAAGAAGCGAGCCCCTTCAGCAGCTGCATCAGCATGAGAACGC
CATCCGGCTGTGCGAACACTGCCTTTGGCTGCTGGACACCCGAAAGGATA
TGCACGAAAGTCGCACTTGTCGCCCACTCCTCGTCCAGGTCTACGAACAA
ATTCGTCAACTACAAAA

BS10085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8506-PA 1518 CG8506-RA 1..851 17..867 4255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-RA 1846 CG8506-RA 261..1111 17..867 4255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8160092..8160758 17..683 3335 100 Plus
2L 23513712 2L 8160817..8161000 684..867 920 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:36:36 has no hits.

BS10085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:00 Download gff for BS10085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8506-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:08 Download gff for BS10085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8506-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:42 Download gff for BS10085.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 252..1107 7..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:07 Download gff for BS10085.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 252..1107 7..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:07 Download gff for BS10085.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8160083..8160758 7..683 99 -> Plus
2L 8160817..8160996 684..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:42 Download gff for BS10085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8160083..8160758 7..683 99 -> Plus
arm_2L 8160817..8160996 684..863 100   Plus

BS10085.complete Sequence

1550 bp (1550 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636557

> BS10085.complete
GAAGTTATCAGTCGACATGTCTGGAAATCCTTTCGACAGCGACGAAGATC
AAAGCTCGGCCAGTGGAGAGATACTAGAGGGCTTCCTATGTCCCATTTGC
CGTGCGGATCTCAAGTCCATCGATGTGCTCACGGATCATTTTGCCCGCCA
GCATGCGGAAGAGGAGGATGCCCTAAAATCCTTTAAAGATATCTTTACCA
AGGCGAAAAAGAAGATCCTAAACCCCTTTGAGGATGAAAAAGGTGCATCT
GTATCGTCGCCCGCAGGTTCCTCCTCTTCAGCGGCTGGCAAGAATCCCAA
TGGCAACGGAGATCGCAATGGACCCAGTAATGCCCGCTCCCGTCTAAATG
TATTTAACTATATGGCCAGGCAGCAGCCTGGTGCTGAGTGCTCCCACTTC
GAGTACTTTCAGTCCATTCGCAATCCTCGCCTGGAGCGATATGCCAGCGA
AACAAACAAACTAATCATTCGTTTGCACCGCCTGCTTAAGGATCTGCCAG
CGGATTCAGTGCAGCGGCGTCAGCATGAACAGCAAACAGTTGCCTGGCTG
GATGGTAGTTCCGTCAAGTTGTGTCCCAGTTGTGCCAAGAGTTTCCACAT
CGCCCGAAGACAACACCACTGCCGTTTGTGCGGAGGCATAATGTGCAATG
ATTGCTCCAAGTTCCTGCCCCTGGAAGATGCCATGCAACTAGCCAGTCTT
TCCACCACAAGAAGCGAGCCCCTTCAGCAGCTGCATCAGCATGAGAACGC
CATCCGGCTGTGCGAACACTGCCTTTGGCTGCTGGACACCCGAAAGGATA
TGCACGAAAGTCGCACTTGTCGCCCACTCCTCGTCCAGGTCTACGAACAA
ATTCGTCAACTACAAAAAGAAGTTACCCCGGATCTGGACATGTATCTAAA
GATCATCAATAGCTTGAACGAAGGGGACACAATCTTCACGTTGGCGGATG
CAGGTGCTTTGCGCGGCAAGATTGGACAAGTGGCAGAGGCCATGGACATG
AGGAGCAAGCGCATTCTAGCCATATTTTGTGAACCAGGCAGCCGGGAGGA
GGCATTAAAGAAGGCCATTCGGTTGGGCTGCATCCAAGCCATCAAGGAGC
GAATGTTATCGCTGCCCCCACTGCCAGAGGAATCGCACATACGCCAGATG
CAGGAGCGTAGACGCATGGAAACGGAGCAGCGTATCCTCACCGAACAGCG
CATGGCCATGGAAGCCTACGAACGAAATAACATGGCAGCTAACCAATCCA
ACGTTGGAGTTCCTGGTCCGGAAAGCGGATCCTTTGCCCAAGGGTCTGAT
CTTCAATCTCTGAACAACTGGTCAGCACCGCAGGCGGCTAGCAAGTCCAG
CCTGGACGATCCGCTGATCGAGCAGATAAACATCATTAAGGGCTACATCA
AACAGGCTCGCCAGGACATGAACTTTGAGGTGGTGGAGACGCTGGAGCTA
AATCTTCGCGAGCTACAGCGCGAAGTGTACGAGCGACAGCGCCAGTCCCA
GGGAAGCACCGCCGCCTCACCCACAGAGGCCTAAAAGCTTTCTAGACCAT

BS10085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-RA 1518 CG8506-PA 1..1518 17..1534 7590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-RA 1846 CG8506-RA 261..1778 17..1534 7590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8160092..8160758 17..683 3335 100 Plus
2L 23513712 2L 8160817..8161427 684..1294 3055 100 Plus
2L 23513712 2L 8161492..8161732 1294..1534 1205 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:34:43 has no hits.

BS10085.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:19 Download gff for BS10085.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-RA 1..1518 17..1534 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:59 Download gff for BS10085.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-RA 244..1778 7..1542 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:04:01 Download gff for BS10085.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 261..1776 17..1532 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:20 Download gff for BS10085.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-RA 245..1779 7..1542 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:37 Download gff for BS10085.complete
Subject Subject Range Query Range Percent Splice Strand
Rbsn-5-RA 261..1776 17..1532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:37 Download gff for BS10085.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8160092..8160758 17..683 100 -> Plus
2L 8160817..8161427 684..1294 100 -> Plus
2L 8161493..8161730 1295..1532 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:04:01 Download gff for BS10085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8160092..8160758 17..683 100 -> Plus
arm_2L 8160817..8161427 684..1294 100 -> Plus
arm_2L 8161493..8161730 1295..1532 100   Plus

BS10085.pep Sequence

Translation from 16 to 1533

> BS10085.pep
MSGNPFDSDEDQSSASGEILEGFLCPICRADLKSIDVLTDHFARQHAEEE
DALKSFKDIFTKAKKKILNPFEDEKGASVSSPAGSSSSAAGKNPNGNGDR
NGPSNARSRLNVFNYMARQQPGAECSHFEYFQSIRNPRLERYASETNKLI
IRLHRLLKDLPADSVQRRQHEQQTVAWLDGSSVKLCPSCAKSFHIARRQH
HCRLCGGIMCNDCSKFLPLEDAMQLASLSTTRSEPLQQLHQHENAIRLCE
HCLWLLDTRKDMHESRTCRPLLVQVYEQIRQLQKEVTPDLDMYLKIINSL
NEGDTIFTLADAGALRGKIGQVAEAMDMRSKRILAIFCEPGSREEALKKA
IRLGCIQAIKERMLSLPPLPEESHIRQMQERRRMETEQRILTEQRMAMEA
YERNNMAANQSNVGVPGPESGSFAQGSDLQSLNNWSAPQAASKSSLDDPL
IEQINIIKGYIKQARQDMNFEVVETLELNLRELQREVYERQRQSQGSTAA
SPTEA*

BS10085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Rbsn-5-PA 505 CG8506-PA 1..505 1..505 2610 100 Plus