Clone Sequence Records
BS10085.3prime Sequence
928 bp (842 high quality bases) assembled on 2006-04-19
> BS10085.3prime
ATGGTCTAGAAAGCTTTTAGGCCTCTGTGGGTGAGGCGGCGGTGCTTCCC
TGGGACTGGCGCTGTCGCTCGTACACTTCGCGCTGTAGCTCGCGAAGATT
TAGCTCCAGCGTCTCCACCACCTCAAAGTTCATGTCCTGGCGAGCCTGTT
TGATGTAGCCCTTAATGATGTTTATCTGCTCGATCAGCGGATCGTCCAGG
CTGGACTTGCTAGCCGCCTGCGGTGCTGACCAGTTGTTCAGAGATTGAAG
ATCAGACCCTTGGGCAAAGGATCCGCTTTCCGGACCAGGAACTCCAACGT
TGGATTGGTTAGCTGCCATGTTATTTCGTTCGTAGGCTTCCATGGCCATG
CGCTGTTCGGTGAGGATACGCTGCTCCGTTTCCATGCGTCTACGCTCCTG
CATCTGGCGTATGTGCGATTCCTCTGGCAGTGGGGGCAGCGATAACATTC
GCTCCTTGATGGCTTGGATGCAGCCCAACCGAATGGCCTTCTTTAATGCC
TCCTCCCGGCTGCCTGGTTCACAAAATATGGCTAGAATGCGCTTGCTCCT
CATGTCCATGGCCTCTGCCACTTGTCCAATCTTGCCGCGCAAAGCACCTG
CATCCGCCAACGTGAAGATTGTGTCCCCTTCGTTCAAGCTATTGATGATC
TTTAGATACATGTCCAGATCCGGGGTAACTTCTTTTTGTAGTTGACGAAT
TTGTTCGTAGACCTGGACGAGGAGTGGGCGACAAGTGCGACTTTCGTGCA
TATCCTTTCGGGTGTCCAGCAGCCAAAGGCAGTGTTCGCACAGCCGGATG
GCGTTCTCATGCTGATGCAGCTGCTGAAGGGGCTCGCTTCTTGTGGTGGA
AAGACTGGCTAGTTGCATGGCATCTTCCAGGGGCAGGAACTTTGGAGCAA
TCATTGCACATTATGCCTCCGCACAAAC
BS10085.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8506-PA | 1518 | CG8506-RA | 643..1518 | 892..17 | 4380 | 100 | Minus |
CG8506-PA | 1518 | CG8506-RA | 608..644 | 928..892 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbsn-5-RA | 1846 | CG8506-RA | 868..1778 | 928..17 | 4535 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8160817..8161427 | 867..257 | 3055 | 100 | Minus |
2L | 23513712 | 2L | 8161492..8161732 | 257..17 | 1205 | 100 | Minus |
2L | 23513712 | 2L | 8160699..8160758 | 928..868 | 255 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:55:32 has no hits.
BS10085.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:28:59 Download gff for
BS10085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8506-PA | 608..1518 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:05 Download gff for
BS10085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8506-PA | 608..1518 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:37:42 Download gff for
BS10085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbsn-5-RA | 868..1786 | 9..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:49 Download gff for
BS10085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbsn-5-RA | 868..1786 | 9..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:49 Download gff for
BS10085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8160699..8160758 | 868..928 | 98 | -> | Minus |
2L | 8160817..8161427 | 257..867 | 100 | -> | Minus |
2L | 8161493..8161740 | 9..256 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:37:42 Download gff for
BS10085.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8160699..8160758 | 868..928 | 98 | -> | Minus |
arm_2L | 8160817..8161427 | 257..867 | 100 | -> | Minus |
arm_2L | 8161493..8161740 | 9..256 | 98 | | Minus |
BS10085.5prime Sequence
867 bp (832 high quality bases) assembled on 2006-04-19
> BS10085.5prime
GAAGTTATCAGTCGACATGTCTGGAAATCCTTTCGACAGCGACGAAGATC
AAAGCTCGGCCAGTGGAGAGATACTAGAGGGCTTCCTATGTCCCATTTGC
CGTGCGGATCTCAAGTCCATCGATGTGCTCACGGATCATTTTGCCCGCCA
GCATGCGGAAGAGGAGGATGCCCTAAAATCCTTTAAAGATATCTTTACCA
AGGCGAAAAAGAAGATCCTAAACCCCTTTGAGGATGAAAAAGGTGCATCT
GTATCGTCGCCCGCAGGTTCCTCCTCTTCAGCGGCTGGCAAGAATCCCAA
TGGCAACGGAGATCGCAATGGACCCAGTAATGCCCGCTCCCGTCTAAATG
TATTTAACTATATGGCCAGGCAGCAGCCTGGTGCTGAGTGCTCCCACTTC
GAGTACTTTCAGTCCATTCGCAATCCTCGCCTGGAGCGATATGCCAGCGA
AACAAACAAACTAATCATTCGTTTGCACCGCCTGCTTAAGGATCTGCCAG
CGGATTCAGTGCAGCGGCGTCAGCATGAACAGCAAACAGTTGCCTGGCTG
GATGGTAGTTCCGTCAAGTTGTGTCCCAGTTGTGCCAAGAGTTTCCACAT
CGCCCGAAGACAACACCACTGCCGTTTGTGCGGAGGCATAATGTGCAATG
ATTGCTCCAAGTTCCTGCCCCTGGAAGATGCCATGCAACTAGCCAGTCTT
TCCACCACAAGAAGCGAGCCCCTTCAGCAGCTGCATCAGCATGAGAACGC
CATCCGGCTGTGCGAACACTGCCTTTGGCTGCTGGACACCCGAAAGGATA
TGCACGAAAGTCGCACTTGTCGCCCACTCCTCGTCCAGGTCTACGAACAA
ATTCGTCAACTACAAAA
BS10085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8506-PA | 1518 | CG8506-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbsn-5-RA | 1846 | CG8506-RA | 261..1111 | 17..867 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8160092..8160758 | 17..683 | 3335 | 100 | Plus |
2L | 23513712 | 2L | 8160817..8161000 | 684..867 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:36:36 has no hits.
BS10085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:00 Download gff for
BS10085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8506-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:08 Download gff for
BS10085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8506-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:42 Download gff for
BS10085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbsn-5-RA | 252..1107 | 7..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:47:07 Download gff for
BS10085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbsn-5-RA | 252..1107 | 7..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:47:07 Download gff for
BS10085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8160083..8160758 | 7..683 | 99 | -> | Plus |
2L | 8160817..8160996 | 684..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:42 Download gff for
BS10085.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8160083..8160758 | 7..683 | 99 | -> | Plus |
arm_2L | 8160817..8160996 | 684..863 | 100 | | Plus |
BS10085.complete Sequence
1550 bp (1550 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636557
> BS10085.complete
GAAGTTATCAGTCGACATGTCTGGAAATCCTTTCGACAGCGACGAAGATC
AAAGCTCGGCCAGTGGAGAGATACTAGAGGGCTTCCTATGTCCCATTTGC
CGTGCGGATCTCAAGTCCATCGATGTGCTCACGGATCATTTTGCCCGCCA
GCATGCGGAAGAGGAGGATGCCCTAAAATCCTTTAAAGATATCTTTACCA
AGGCGAAAAAGAAGATCCTAAACCCCTTTGAGGATGAAAAAGGTGCATCT
GTATCGTCGCCCGCAGGTTCCTCCTCTTCAGCGGCTGGCAAGAATCCCAA
TGGCAACGGAGATCGCAATGGACCCAGTAATGCCCGCTCCCGTCTAAATG
TATTTAACTATATGGCCAGGCAGCAGCCTGGTGCTGAGTGCTCCCACTTC
GAGTACTTTCAGTCCATTCGCAATCCTCGCCTGGAGCGATATGCCAGCGA
AACAAACAAACTAATCATTCGTTTGCACCGCCTGCTTAAGGATCTGCCAG
CGGATTCAGTGCAGCGGCGTCAGCATGAACAGCAAACAGTTGCCTGGCTG
GATGGTAGTTCCGTCAAGTTGTGTCCCAGTTGTGCCAAGAGTTTCCACAT
CGCCCGAAGACAACACCACTGCCGTTTGTGCGGAGGCATAATGTGCAATG
ATTGCTCCAAGTTCCTGCCCCTGGAAGATGCCATGCAACTAGCCAGTCTT
TCCACCACAAGAAGCGAGCCCCTTCAGCAGCTGCATCAGCATGAGAACGC
CATCCGGCTGTGCGAACACTGCCTTTGGCTGCTGGACACCCGAAAGGATA
TGCACGAAAGTCGCACTTGTCGCCCACTCCTCGTCCAGGTCTACGAACAA
ATTCGTCAACTACAAAAAGAAGTTACCCCGGATCTGGACATGTATCTAAA
GATCATCAATAGCTTGAACGAAGGGGACACAATCTTCACGTTGGCGGATG
CAGGTGCTTTGCGCGGCAAGATTGGACAAGTGGCAGAGGCCATGGACATG
AGGAGCAAGCGCATTCTAGCCATATTTTGTGAACCAGGCAGCCGGGAGGA
GGCATTAAAGAAGGCCATTCGGTTGGGCTGCATCCAAGCCATCAAGGAGC
GAATGTTATCGCTGCCCCCACTGCCAGAGGAATCGCACATACGCCAGATG
CAGGAGCGTAGACGCATGGAAACGGAGCAGCGTATCCTCACCGAACAGCG
CATGGCCATGGAAGCCTACGAACGAAATAACATGGCAGCTAACCAATCCA
ACGTTGGAGTTCCTGGTCCGGAAAGCGGATCCTTTGCCCAAGGGTCTGAT
CTTCAATCTCTGAACAACTGGTCAGCACCGCAGGCGGCTAGCAAGTCCAG
CCTGGACGATCCGCTGATCGAGCAGATAAACATCATTAAGGGCTACATCA
AACAGGCTCGCCAGGACATGAACTTTGAGGTGGTGGAGACGCTGGAGCTA
AATCTTCGCGAGCTACAGCGCGAAGTGTACGAGCGACAGCGCCAGTCCCA
GGGAAGCACCGCCGCCTCACCCACAGAGGCCTAAAAGCTTTCTAGACCAT
BS10085.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbsn-5-RA | 1518 | CG8506-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbsn-5-RA | 1846 | CG8506-RA | 261..1778 | 17..1534 | 7590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8160092..8160758 | 17..683 | 3335 | 100 | Plus |
2L | 23513712 | 2L | 8160817..8161427 | 684..1294 | 3055 | 100 | Plus |
2L | 23513712 | 2L | 8161492..8161732 | 1294..1534 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:34:43 has no hits.
BS10085.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:19 Download gff for
BS10085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbsn-RA | 1..1518 | 17..1534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:59 Download gff for
BS10085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbsn-RA | 244..1778 | 7..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:04:01 Download gff for
BS10085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbsn-5-RA | 261..1776 | 17..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:20 Download gff for
BS10085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbsn-RA | 245..1779 | 7..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:37 Download gff for
BS10085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbsn-5-RA | 261..1776 | 17..1532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:37 Download gff for
BS10085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8160092..8160758 | 17..683 | 100 | -> | Plus |
2L | 8160817..8161427 | 684..1294 | 100 | -> | Plus |
2L | 8161493..8161730 | 1295..1532 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:04:01 Download gff for
BS10085.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8160092..8160758 | 17..683 | 100 | -> | Plus |
arm_2L | 8160817..8161427 | 684..1294 | 100 | -> | Plus |
arm_2L | 8161493..8161730 | 1295..1532 | 100 | | Plus |
BS10085.pep Sequence
Translation from 16 to 1533
> BS10085.pep
MSGNPFDSDEDQSSASGEILEGFLCPICRADLKSIDVLTDHFARQHAEEE
DALKSFKDIFTKAKKKILNPFEDEKGASVSSPAGSSSSAAGKNPNGNGDR
NGPSNARSRLNVFNYMARQQPGAECSHFEYFQSIRNPRLERYASETNKLI
IRLHRLLKDLPADSVQRRQHEQQTVAWLDGSSVKLCPSCAKSFHIARRQH
HCRLCGGIMCNDCSKFLPLEDAMQLASLSTTRSEPLQQLHQHENAIRLCE
HCLWLLDTRKDMHESRTCRPLLVQVYEQIRQLQKEVTPDLDMYLKIINSL
NEGDTIFTLADAGALRGKIGQVAEAMDMRSKRILAIFCEPGSREEALKKA
IRLGCIQAIKERMLSLPPLPEESHIRQMQERRRMETEQRILTEQRMAMEA
YERNNMAANQSNVGVPGPESGSFAQGSDLQSLNNWSAPQAASKSSLDDPL
IEQINIIKGYIKQARQDMNFEVVETLELNLRELQREVYERQRQSQGSTAA
SPTEA*
BS10085.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbsn-5-PA | 505 | CG8506-PA | 1..505 | 1..505 | 2610 | 100 | Plus |