Clone Sequence Records
BS10087.3prime Sequence
946 bp (832 high quality bases) assembled on 2006-04-19
> BS10087.3prime
ATGGTCTAGAAAGCTTCTACAAATATCTGTAAATATTATAATAATTATCA
CGTTCCAAATATTCACGCTCCACCAGGTAGTCAAGTCTTTTCTTGATAAA
ACTCACTTGTGGCTTTACCCGATCTTTAAGCTCCTCATAAACGAGTGAAA
TTAATTCCGAATATTCCAGTTGCTTTTGACCTTTCATAATGCGCACTATT
GCAGCATCCACTTGCTTGTCTCGCCGTATTTTCAATTCAATTTCGCTTTT
CTCTTCAATCTTTCTCATTTTTCTGGGCAGGGGCTCATTGCAGAAGAGTC
GGCGTTTCCGGTTTGTAAAGTCCATGTTTATTTCTATATAATTTACTTTA
TTTACTTCGATATAAACCAGAAACTTAATCTGTTTTAATGCCTCTTGGAG
GGTCTCCAGCTCGACTCCCAAAGCAGTCACCAATTCCTGCTCCGTAAATC
GTTCATGCCGATTGAATAGCATCAGAACGGCCATTTGCAAAGTGCTTACC
TCGAGAATATAGACCGACTGATTCAAATGACAGGTTATCTCACCAGAGGA
TAATTCGTTATTAAGTTGTATAATTGCCTTGCTTTGTAATTTTCTTGCTT
CGTAAAAAATACGAAACTCCTTCCAAGCTTGCTGCAGTTCGTCGGGCAAC
GTGAGGTTAAAATTCTCAAAACTCCCATCATTTTTGAAGCATTTTGGACG
AAAATCGAATCCTAACTTGATCCCCTTGCTATTCAAGTGATCTTGAAACT
CTTTTTTTAGGGTTCTCAACTTATCTACATCTCTTAACTGCACATATATA
CATCTAGTTACAAAGTTTGCCATTTTTTTATTCAGAAGGGAATACATTAT
GGACTCAACGCCGTCCGAAGTGGATGTTTCATTGATTTGTCGAATCCGAA
GTGCTTTCAAATACATGTCAATAAATTTGTACTCATCGCTTAAAAA
BS10087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-PA | 2013 | CG11261-RA | 1084..2013 | 946..17 | 4625 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-RA | 2215 | CG11261-RA | 1200..2129 | 946..17 | 4635 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13009931..13010486 | 391..946 | 2765 | 99.8 | Plus |
| 3L | 28110227 | 3L | 13009485..13009861 | 17..393 | 1885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:18:16 has no hits.
BS10087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:03 Download gff for
BS10087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-PA | 1089..2013 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:13 Download gff for
BS10087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-PA | 1089..2013 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:24:35 Download gff for
BS10087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 1205..2129 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:04 Download gff for
BS10087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 1205..2129 | 17..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:04 Download gff for
BS10087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13009485..13009859 | 17..391 | 100 | <- | Plus |
| 3L | 13009932..13010481 | 392..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:24:35 Download gff for
BS10087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13002585..13002959 | 17..391 | 100 | <- | Plus |
| arm_3L | 13003032..13003581 | 392..941 | 99 | | Plus |
BS10087.5prime Sequence
921 bp (731 high quality bases) assembled on 2006-04-19
> BS10087.5prime
GAAGTTATCAGTCGACATGAATCGGGTTAAAAGAATATCTAATTACTTTG
ACTCTATGCTACCCCTGATCGATAATATTTTGCAAGTAGTGAATCAGATC
TTCGATGATTACACTTCCTTTGATGGCCAAAAGCTCATGCACTTATACCA
CCTCATTTACAAGCAGTGCGCGGCGGAGCGCAATTGGAATAATCCAGCCC
AGAAGAACGGGAGAAGTCTTTACATTGTGCTATCCGACTGCCTGATGAAG
CGACTAAAAAACATAGCATGGGTAATGGAGAACCAACTCGACGACAACAA
ACCAATTCGACTGATCGCCAAATATTTAGAGCACTGGGTACCCTATCAAA
GGTCATGTGAGAAACTGAACCTAGCTTGCTACCACTTCAACCGCAACTGG
GTGGAACGGGAGCGGCTTAAGGGAGACAAAGAAACTTATCCGATATATCG
CTTGGCCATGATTAGCTGGAAGGAGCTGGTCTTCGAGCCCAGCGTCACGA
TTCTCGCCGCCATTAGGCTGATTTTGAGTCAGATGCCCAGGGAATACAAT
AAATCATTGGAATACCAAGTATACCAGGTGCTCCAATCCATTGTGGAACT
GTACGCCAACGATAAGTACCAAGATGTGTCCTTGCCTTCTAGGATAGACA
AAATTTTCACTGAGAAGGTGATGGATTTCTACAAGTCAACGACGTTGCAC
GAATTCCAAAAGATCGTCGTATCCAATGACTACAAGGATTTCAAGCATTT
CCTTAGGTACGCATGCCTAGCCATGCCAGAAATTGAGAATGGGACACAAT
TTAAGGCAATACTAAAAAGATACCTCGCTGCGAAGCTGCAGGAGACGAGG
CTGTCAGGCAAGGATTATATCCAAGCCTTCTTGGGACTTTGTCGCGGTCC
TTTGCAGCGAGCATTGCGGGA
BS10087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-PA | 2013 | CG11261-RA | 1..905 | 17..921 | 4500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-RA | 2215 | CG11261-RA | 117..1021 | 17..921 | 4510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13010665..13011569 | 921..17 | 4510 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:06:19 has no hits.
BS10087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:04 Download gff for
BS10087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:15 Download gff for
BS10087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:43:51 Download gff for
BS10087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 112..1020 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:15 Download gff for
BS10087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 112..1020 | 9..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:15 Download gff for
BS10087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13010666..13011574 | 9..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:43:51 Download gff for
BS10087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13003766..13004674 | 9..920 | 99 | | Minus |
BS10087.complete Sequence
2045 bp assembled on 2007-11-30
GenBank Submission: FJ636558
> BS10087.complete
GAAGTTATCAGTCGACATGAATCGGGTTAAAAGAATATCTAATTACTTTG
ACTCTATGCTACCCCTGATCGATAATATTTTGCAAGTAGTGAATCAGATC
TTCGATGATTACACTTCCTTTGATGGCCAAAAGCTCATGCACTTATACCA
CCTCATTTACAAGCAGTGCGCGGCGGAGCGCAATTGGAATAATCCAGCCC
AGAAGAACGGGAGAAGTCTTTACATTGTGCTATCCGACTGCCTGATGAAG
CGACTAAAAAACATAGCATGGGTAATGGAGAACCAACTCGACGACAACAA
ACCAATTCGACTGATCGCCAAATATTTAGAGCACTGGGTACCCTATCAAA
GGTCATGTGAGAAACTGAACCTAGCTTGCTACCACTTCAACCGCAACTGG
GTGGAACGGGAGCGGCTTAAGGGAGACAAAGAAACTTATCCGATATATCG
CTTGGCCATGATTAGCTGGAAGGAGCTGGTCTTCGAGCCCAGCGTCACGA
TTCTCGCCGCCATTAGGCTGATTTTGAGTCAGATGCCCAGGGAATACAAT
AAATCATTGGAATACCAAGTATACCAGGTGCTCCAATCCATTGTGGAACT
GTACGCCAACGATAAGTACCAAGATGTGTCCTTGCCTTCTAGGATAGACA
AAATTTTCACTGAGAAGGTGATGGATTTCTACAAGTCAACGACGTTGCAC
GAATTCCAAAAGATCGTCGTATCCAATGACTACAAGGATTTCAAGCATTT
CCTTAGGTACGCATGCCTAGCCATGCCAGAAATTGAGAATGGGACACAAT
TTAAGGCAATACTAAAAAGATACCTCGCTGCGAGGCTGCAGGAGACGAGG
CTGTCAGGCAAGGATTATATCCAAGCCTTCTTGGGACTTTGTCGCGGTCC
TTTGCAGCGAGCATTGCGGGACCACACAAAATTGGCGGAAGTCGTGGATG
CGGTGTGCAAAGAAGAAATTAATAGAAAGGGCCAGATAATTGACCCCACC
CGTCTGCTTGTCACATATGCCAACGAACTTATGACCAAAAGGCAGGAGTC
CGAGGAAGCAATTATTGATGAACTTAAACGGATCGTTAAATGCGTGGAGT
TTTTAAGCGATGAGTACAAATTTATTGACATGTATTTGAAAGCACTTCGG
ATTCGACAAATCAATGAAACATCCACCTCGGACGGCGTTGAGTCCATAAT
GTATTCCCTTCTGAATAAAAAAATGGCAAACTTTGTAACTAGATGTATAT
ATGTGCAGTTAAGAGATGTAGATAAGTTGAGAACCCTAAAAAAAGAGTTT
CAAGATCACTTGAATAGCAAGGGGATCAAGTTAGGATTCGATTTTCGTCC
AAAATGCTTCAAAAATGATGGGAGTTTTGAGAATTTTAACCTCACGTTGC
CCGACGAACTGCAGCAAGCTTGGAAGGAGTTTCGTATTTTTTACGAAGCA
AGAAAATTACAAAGCAAGGCAATTATACAACTTAATAACGAATTATCCTC
TGGTGAGATAACCTGTCATTTGAATCAGTCGGTCTATATTCTCGAGGTAA
GCACTTTGCAAATGGCCGTTCTGATGCTATTCAATCGGCATGAACGATTT
ACGGAGCAGGAATTGGTGACTGCTTTGGGAGTCGAGCTGGAGACCCTCCA
AGAGGCATTAAAACAGATTAAGTTTCTGGTTTATATCGAAGTAAATAAAG
TAAATTATATAGAAATAAACATGGACTTTACAAACCGGAAACGCCGACTC
TTCTGCAATGAGCCCCTGCCCAGAAAAATGAGAAAGATTGAAGAGAAAAG
CGAAATTGAATTGAAAATACGGCGAGACAAGCAAGTGGATGCTGCAATAG
TGCGCATTATGAAAGGTCAAAAGCAACTGGAATATTCGGAATTAATTTCA
CTCGTTTATGAGGAGCTTAAAGATCGGGTAAAGCCACAAGTGAGTTTTAT
CAAGAAAAGACTTGACTACCTGGTGGAGCGTGAATATTTGGAACGTGATA
ATTATTATAATATTTACAGATATTTGTAGAAGCTTTCTAGACCAT
BS10087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-RA | 2013 | CG11261-PA | 1..2013 | 17..2029 | 10065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-RA | 2215 | CG11261-RA | 117..2129 | 17..2029 | 10065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13009931..13011569 | 1655..17 | 8195 | 100 | Minus |
| 3L | 28110227 | 3L | 13009485..13009861 | 2029..1653 | 1885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:20:07 has no hits.
BS10087.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:57 Download gff for
BS10087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 1..2013 | 17..2029 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:09 Download gff for
BS10087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 108..2125 | 9..2029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:20 Download gff for
BS10087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 117..2129 | 17..2029 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:55 Download gff for
BS10087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 113..2125 | 17..2029 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:04 Download gff for
BS10087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11261-RA | 117..2129 | 17..2029 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:04 Download gff for
BS10087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13009485..13009859 | 1655..2029 | 100 | <- | Minus |
| 3L | 13009932..13011569 | 17..1654 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:20 Download gff for
BS10087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13002585..13002959 | 1655..2029 | 100 | <- | Minus |
| arm_3L | 13003032..13004669 | 17..1654 | 100 | | Minus |
BS10087.pep Sequence
Translation from 16 to 2028
> BS10087.pep
MNRVKRISNYFDSMLPLIDNILQVVNQIFDDYTSFDGQKLMHLYHLIYKQ
CAAERNWNNPAQKNGRSLYIVLSDCLMKRLKNIAWVMENQLDDNKPIRLI
AKYLEHWVPYQRSCEKLNLACYHFNRNWVERERLKGDKETYPIYRLAMIS
WKELVFEPSVTILAAIRLILSQMPREYNKSLEYQVYQVLQSIVELYANDK
YQDVSLPSRIDKIFTEKVMDFYKSTTLHEFQKIVVSNDYKDFKHFLRYAC
LAMPEIENGTQFKAILKRYLAARLQETRLSGKDYIQAFLGLCRGPLQRAL
RDHTKLAEVVDAVCKEEINRKGQIIDPTRLLVTYANELMTKRQESEEAII
DELKRIVKCVEFLSDEYKFIDMYLKALRIRQINETSTSDGVESIMYSLLN
KKMANFVTRCIYVQLRDVDKLRTLKKEFQDHLNSKGIKLGFDFRPKCFKN
DGSFENFNLTLPDELQQAWKEFRIFYEARKLQSKAIIQLNNELSSGEITC
HLNQSVYILEVSTLQMAVLMLFNRHERFTEQELVTALGVELETLQEALKQ
IKFLVYIEVNKVNYIEINMDFTNRKRRLFCNEPLPRKMRKIEEKSEIELK
IRRDKQVDAAIVRIMKGQKQLEYSELISLVYEELKDRVKPQVSFIKKRLD
YLVEREYLERDNYYNIYRYL*
BS10087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11261-PA | 670 | CG11261-PA | 1..670 | 1..670 | 3454 | 100 | Plus |
| Cul1-PD | 774 | CG1877-PD | 11..773 | 5..670 | 501 | 25.7 | Plus |
| Cul1-PA | 774 | CG1877-PA | 11..773 | 5..670 | 501 | 25.7 | Plus |
| Cul1-PB | 774 | CG1877-PB | 11..773 | 5..670 | 501 | 25.7 | Plus |
| Cul1-PC | 774 | CG1877-PC | 11..773 | 5..670 | 501 | 25.7 | Plus |
