Clone Sequence Records
BS10090.complete Sequence
2228 bp assembled on 2009-12-07
GenBank Submission: KX805863
> BS10090.complete
GAAGTTATCAGTCGACATGTGTTTCGCCAGCAGTATAATCGAAGCGCACA
GGAAGTTATTTATAGCGCCGCCGGATTTGGATCATTCCGATCCAGCCACA
CCCACGATTTCGACCAGATCCAAAATGCCGAGGGGGAAATCCCGCCTGCA
AACCGAAGTTTGTGGCGATTGCGGAGCTGGTGATCCATCCTGGGCGAGCA
TCAACCGGGGCATCCTTCTCTGCGCCGACTGCTGTTCGGTGCACCGCAGT
CTGGGCAGGCACATCTCCATTGTGAAGTCTCTACGCCAGGGTAACTGGGA
GCCCTCGGTTCTGAACTTTGTGAACTCTCTAAACGCCCATGGAGCCAATA
GTGTTTGGGAGCATCATCTGCTGGATGGCAGCACCAACTCCACCGGCGGA
AAGCACGTGCCACGCTGGCGGAAACCCACGCCCAAGGATGCACTCCATCC
CACCAAATCCGATTTTATTAAGGCCAAGCATGTGAATCTAACGTTCGTGC
TAAAACCCAGTCTCCAGGATGACGATGATGGCAATGGCTCAGCGGGCTGT
CTGGAACAGGAGCTGAGTAGACAGCTCCATGCCAGCGTGCGGACCAGCAA
TCTAGAGACTTCACTGCGCTTCTTGGTCCAGGGTGCAGACCCAAATTACT
ACCACGAGGACAAGCTATCAACGCCACTTCACATGGCCGCCAAGTTTGGC
CAGGCATCACAAATCGAGATGCTGCTCATCTATGGAGCCGATGTGAATGC
CTTGGATGGCAATGGGATGACTCCTCTGGAACTGGCCAGGGCCAACAATC
ATAACACCATCGCCGAAAGACTGCTTGATGCCATGTACGATGTCACCGAC
AGGATCATTACCTTCCTAGGTGGCAAGAAGCCAGATCATGCGAGTGGCCG
CCACATGATTATTCCGGATGCCAATGGCGCGGACATAAGCGAGCAACTGA
AGATTGCACGTGGAAAGTTGCAACTCGTGCCAAATAAGATGTTTGAGGAG
CTGGTCATGGACCTATACGATGAGGTGGACAGACGCGAGTGCGAAGCCAT
CTGGTCGACAAGCACCCTGAATGCTGATCATGCAACTGTGCCATTTTTGC
CGGCTAATCCATTTTTGAGCGCCACGCGCAATCAGGGTCGTCAGAAATTG
GCACGCTTCAATCGCGCCGAGTTCACTGGTCTCTTGACCGACGTGCTCGT
CGATGCTATGCGACGCCAGAATATGGCCAACCTGCGTCCAATGGATGCCC
CAGTGGCCGGGCACCAGTCGCTGCAATCGCTGCCGTATGCCAACAACTCA
ATGCTGCTCGGCTCGTTCGAGCAGGGCGGTCATGATCCGAATCTGTCGGA
CGACGAGCCCATTTATGATCCGGTGGCCAGCGATGACGACTATGCCCCAG
TGCCACCAATGGCCCAGCAGGCCATTGTGCATACGCCACCGCGCAGCGCG
AATTCGCACAACGAAATGGAAACGCTGCGCAAACAGCTGAACGATTACAA
ATCGGAGATCAATCAGCTAAAGAACGTGGTGCAGATGCTGTCCAGCGAGA
ACACGCAGCTCAAGTCCAAGTTCTCGAGCGCATCGAACAACAGCGTGTAC
GATGAGCCACTTCGCATTGATCTGAGCTTGAGCAGTCCGGATACAGAGCA
CGAGCCTCTGTCGCTACCCGAAGGTGGGACTGCCAATGGGGAAAGCGGCT
CCTCCAATGATTCGTCAAATCAATCGACCATCAAGCGTCCAGCCAGCATG
TACGAGCGTCGTTTGGTACCCAATGTGGCCAAGGGCAATACGGACATACG
AAATACGACCAGCATGTACCAAATGGCTGGGGATGGCAAACCTTTTGGTG
AGGAGGTCAAAGTGCGCTCTGACTTGGTCACACGCCGTCTTAAGGAGCTC
ATAAGAGCTATGCAGCCAGTGCCAGAGGATCAAAAGCAGTCGATTGCTCC
ACATGGAGAGCTTATACGAAGTGCCGTGACTGATTTAATTGCCCTTTATG
CCAATTTGCCACCGAATGCCAGTGACCCGTCTCGCGAAACCCTTAAACTG
CTAACCCGCCAGAACATTCTCATCCAGCACGAGTGCGAGAATCTGCAGAA
AGCCATCGAGGCGGATGACAAGCAGGCCATACAGAAGAACACCTTGGAGG
TGCGCGACTGCGCCTTCCACATTGCCAGTGCCATAAAGACTTTGGTGTTG
CAGTTCTATTGAAAGCTTTCTAGACCAT
BS10090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Git-RA | 2196 | CG16728-PA | 1..2196 | 17..2212 | 10980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Git-RA | 2503 | CG16728-RA | 115..2310 | 17..2212 | 10980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10644255..10645130 | 892..17 | 4380 | 100 | Minus |
| X | 23542271 | X | 17795057..17795568 | 1420..1931 | 2485 | 99 | Plus |
| 2R | 25286936 | 2R | 10642277..10642673 | 2008..1612 | 1985 | 100 | Minus |
| 2R | 25286936 | 2R | 10643309..10643597 | 1421..1133 | 1445 | 100 | Minus |
| 2R | 25286936 | 2R | 10642011..10642215 | 2212..2008 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 10642746..10642938 | 1611..1419 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 10643806..10643963 | 1049..892 | 790 | 100 | Minus |
| 2R | 25286936 | 2R | 10643656..10643742 | 1136..1050 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:24:34 has no hits.
BS10090.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:40 Download gff for
BS10090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16728-RA | 104..2298 | 17..2211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:33 Download gff for
BS10090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Git-RA | 115..2309 | 17..2211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:11 Download gff for
BS10090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16728-RA | 104..2298 | 17..2211 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:47 Download gff for
BS10090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Git-RA | 115..2309 | 17..2211 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:47 Download gff for
BS10090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10643806..10643962 | 893..1049 | 100 | <- | Minus |
| 2R | 10643657..10643742 | 1050..1135 | 100 | <- | Minus |
| 2R | 10642012..10642214 | 2009..2211 | 100 | <- | Minus |
| 2R | 10642277..10642673 | 1612..2008 | 100 | <- | Minus |
| 2R | 10642746..10642936 | 1421..1611 | 100 | <- | Minus |
| 2R | 10643310..10643594 | 1136..1420 | 100 | <- | Minus |
| 2R | 10644255..10645130 | 17..892 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:33 Download gff for
BS10090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6531311..6531467 | 893..1049 | 100 | <- | Minus |
| arm_2R | 6529517..6529719 | 2009..2211 | 100 | <- | Minus |
| arm_2R | 6529782..6530178 | 1612..2008 | 100 | <- | Minus |
| arm_2R | 6530251..6530441 | 1421..1611 | 100 | <- | Minus |
| arm_2R | 6530815..6531099 | 1136..1420 | 100 | <- | Minus |
| arm_2R | 6531162..6531247 | 1050..1135 | 100 | <- | Minus |
| arm_2R | 6531760..6532635 | 17..892 | 100 | | Minus |
BS10090.3prime Sequence
944 bp (850 high quality bases) assembled on 2006-04-19
> BS10090.3prime
ATGGTCTAGAAAGCTTTCAATAGAACTGCAACACCAAAGTCTTTATGGCA
CTGGCAATGTGGAAGGCGCAGTCGCGCACCTCCAAGGTGTTCTTCTGTAT
GGCCTGCTTGTCATCCGCCTCGATGGCTTTCTGCAGATTCTCGCACTCGT
GCTGGATGAGAATGTTCTGGCGGGTTAGCAGTTTAAGGGTTTCGCGAGAC
GGGTCACTGGCATTCGGTGGCAAATTGGCATAAAGGGCAATTAAATCAGT
CACGGCACTTCGTATAAGCTCTCCATGTGGAGCAATCGACTGCTTTTGAT
CCTCTGGCACTGGCTGCATAGCTCTTATGAGCTCCTTAAGACGGCGTGTG
ACCAAGTCAGAGCGCACTTTGACCTCCTCACCAAAAGGTTTGCCATCCCC
AGCCATTTGGTACATGCTGGTCGTATTTCGTATGTCCGTATTGCCCTTGG
CCACATTGGGTACCAAACGACGCTCGTACATGCTGGCTGGACGCTTGATG
GTCGATTGATTTGACGAATCATTGGAGGAGCCGCTTTCCCCATTGGCAGT
CCCACCTTCGGGTAGCGACAGAGGCTCGTGCTCTGTATCCGGACTGCTCA
AGCTCAGATCAATGCGAAGTGGCTCATCGTACACGCTGTTGTTCGATGCG
CTCGAGAACTTGGACTTGAGCTGCGTGTTCTCGCTGGACAGCATCTGCAC
CACGTTCTTTAGCTGATTGATCTCCGATTTGTAATCGTTCAGCTGTTTGC
GCAGCGTTTCCATTTCGTTGTGCGAATTCGCGCTGCGCGGTGGCGTATGC
ACAATGGCCTGCTGGGCCATTGGTGGCACTGGGGCATAGTCGTCATCGCT
GGCCACCGGATCATAAATGGGCTCGTCGTCCGACAGATCCGGATCATGAC
CGCCCTGCTCGAACGAGCCGAGCAGCATTGATTTGTTGGCATAC
BS10090.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16728-PA | 2196 | CG16728-RA | 1269..2196 | 944..17 | 4590 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Git-RA | 2503 | CG16728-RA | 1383..2310 | 944..17 | 4610 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17795057..17795568 | 809..298 | 2485 | 99 | Minus |
| 2R | 25286936 | 2R | 10642277..10642673 | 221..617 | 1985 | 100 | Plus |
| 2R | 25286936 | 2R | 10642011..10642215 | 17..221 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 10642746..10642938 | 618..810 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 10643309..10643445 | 808..944 | 655 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:36:52 has no hits.
BS10090.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:08 Download gff for
BS10090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16728-PA | 1269..2196 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:19 Download gff for
BS10090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16728-PA | 1269..2196 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:51:07 Download gff for
BS10090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Git-RA | 1383..2310 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:21 Download gff for
BS10090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Git-RA | 1383..2310 | 17..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:21 Download gff for
BS10090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17795054..17795579 | 277..813 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:51:07 Download gff for
BS10090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17689087..17689612 | 277..813 | 96 | <- | Minus |
BS10090.5prime Sequence
894 bp (812 high quality bases) assembled on 2006-04-19
> BS10090.5prime
GAAGTTATCAGTCGACATGTGTTTCGCCAGCAGTATAATCGAAGCGCACA
GGAAGTTATTTATAGCGCCGCCGGATTTGGATCATTCCGATCCAGCCACA
CCCACGATTTCGACCAGATCCAAAATGCCGAGGGGGAAATCCCGCCTGCA
AACCGAAGTTTGTGGCGATTGCGGAGCTGGTGATCCATCCTGGGCGAGCA
TCAACCGGGGCATCCTTCTCTGCGCCGACTGCTGTTCGGTGCACCGCAGT
CTGGGCAGGCACATCTCCATTGTGAAGTCTCTACGCCAGGGTAACTGGGA
GCCCTCGGTTCTGAACTTTGTGAACTCTCTAAACGCCCATGGAGCCAATA
GTGTTTGGGAGCATCATCTGCTGGATGGCAGCACCAACTCCACCGGCGGA
AAGCACGTGCCACGCTGGCGGAAACCCACGCCCAAGGATGCACTCCATCC
CACCAAATCCGATTTTATTAAGGCCAAGCATGTGAATCTAACGTTCGTGC
TAAAACCCAGTCTCCAGGATGACGATGATGGCAATGGCTCAGCGGGCTGT
CTGGAACAGGAGCTGAGTAGACAGCTCCATGCCAGCGTGCGGACCAGCAA
TCTAGAGACTTCACTGCGCTTCTTGGTCCAGGGTGCAGACCCAAATTACT
ACCACGAGGACAAGCTATCAACGCCACTTCACATGGCCGCCAAGTTTGGC
CAGGCATCACAAATCGAGATGCTGCTCATCTATGGAGCCGATGTGAATGC
CTTGGATGGCAATGGGATGACTCCTCTGGAACTGGCCAGGGCCAACAATC
ATAACACCATCGCCGAAAGACTGCTTGATGCCATGTACGATGTCACCGAC
AGGATCATTACCTTCCTAGGTGGGCAGAAAGCAGATCATGCGAG
BS10090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16728-PA | 2196 | CG16728-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Git-RA | 2503 | CG16728-RA | 115..992 | 17..894 | 4330 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10644255..10645130 | 892..17 | 4320 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:34:43 has no hits.
BS10090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:09 Download gff for
BS10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16728-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:21 Download gff for
BS10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16728-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:42:39 Download gff for
BS10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Git-RA | 113..992 | 14..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:47 Download gff for
BS10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Git-RA | 113..992 | 14..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:47 Download gff for
BS10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10644254..10645132 | 14..894 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:42:39 Download gff for
BS10090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6531759..6532637 | 14..894 | 99 | | Minus |
BS10090.pep Sequence
Translation from 16 to 2211
> BS10090.pep
MCFASSIIEAHRKLFIAPPDLDHSDPATPTISTRSKMPRGKSRLQTEVCG
DCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQGNWEPSVLN
FVNSLNAHGANSVWEHHLLDGSTNSTGGKHVPRWRKPTPKDALHPTKSDF
IKAKHVNLTFVLKPSLQDDDDGNGSAGCLEQELSRQLHASVRTSNLETSL
RFLVQGADPNYYHEDKLSTPLHMAAKFGQASQIEMLLIYGADVNALDGNG
MTPLELARANNHNTIAERLLDAMYDVTDRIITFLGGKKPDHASGRHMIIP
DANGADISEQLKIARGKLQLVPNKMFEELVMDLYDEVDRRECEAIWSTST
LNADHATVPFLPANPFLSATRNQGRQKLARFNRAEFTGLLTDVLVDAMRR
QNMANLRPMDAPVAGHQSLQSLPYANNSMLLGSFEQGGHDPNLSDDEPIY
DPVASDDDYAPVPPMAQQAIVHTPPRSANSHNEMETLRKQLNDYKSEINQ
LKNVVQMLSSENTQLKSKFSSASNNSVYDEPLRIDLSLSSPDTEHEPLSL
PEGGTANGESGSSNDSSNQSTIKRPASMYERRLVPNVAKGNTDIRNTTSM
YQMAGDGKPFGEEVKVRSDLVTRRLKELIRAMQPVPEDQKQSIAPHGELI
RSAVTDLIALYANLPPNASDPSRETLKLLTRQNILIQHECENLQKAIEAD
DKQAIQKNTLEVRDCAFHIASAIKTLVLQFY*
BS10090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Git-PA | 731 | CG16728-PA | 1..731 | 1..731 | 3801 | 100 | Plus |
| CenG1A-PC | 763 | CG31811-PC | 485..677 | 49..259 | 223 | 30.7 | Plus |
| CenG1A-PA | 927 | CG31811-PA | 649..841 | 49..259 | 223 | 30.7 | Plus |
| CenG1A-PB | 995 | CG31811-PB | 717..909 | 49..259 | 223 | 30.7 | Plus |
| CG8243-PA | 517 | CG8243-PA | 33..154 | 49..186 | 170 | 31.9 | Plus |
