Clone Sequence Records
BS10092.3prime Sequence
849 bp (805 high quality bases) assembled on 2006-04-19
> BS10092.3prime
ATGGTCTAGAAAGCTTTTAATGGGCCTCGTTGCCCTTCTCCTTGTTCTTC
ATTCGACTGCAGTAGTAACGGTCGCTGTTCTCGATCCAATCGCAGACATT
CAGGACCGTGTGGAAGGCCGTTCCCTCCTTGCACTCGAATTCAACGGGCT
TGCCATGGACACAGCGGAAGTACTTTCGGCAATTGGGATGTGGTACAAAG
TCACGGTTGGTACAATCGATCTCGTTGGGATCGAACTGCGGTCCCATAGG
CTGCTCGGGATCAGTGGGCTCCACTGGATCCACTGGGTAAACAACTTCTT
CTGGCTCCTCAGTGCTCTTTTCCGGAGCAGGAGTGGTTGTTGTGGTGGTT
GTTGTCTTCTTTGGCTTTTTGGGCTTCTTTGTGGTTGGCTTCGGAGTGCT
ACTGCCAACAGTTGGAACAGGACCTGGAGCGGATGTTGGGCTCAATGGAC
TTGAAGTTGGCTTCGGTTTTGGTTTTGGCCGCTTGGTAGTGCTAGTAGTT
GGTGCCACCACTGCGCCCTCATCTGGATTTGGCGGTGTTGCTGGCGGCTT
TGCCCACTCAGGCCTTGGTGTTGTCTGCCTTGTAGGTTCCGGAACCCGAT
AGTTCTTCATGTTGTCGTACAGGATTTGCGTTAGGCCGTTCTTCCTGCCG
CACATTCCATGGAAGTCGTCCATATCTATGGCCCAGGTCATGGCACCAGC
GTATCCCCGCTGCTTGATAAAGTCCATCTTGATCTGTATGGATGCCTCGT
TCTCGTAGCCCACCCACTGTGTGTCCTTGTAGGTGTAGGGCACCATGCCA
GCGTCATCCCACTCTACCGTCCATCCCTTGGACTTGTCCATCACCTCGG
BS10092.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9307-PA | 1788 | CG9307-RA | 956..1788 | 849..17 | 4165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht5-RA | 2122 | CG9307-RA | 1086..1918 | 849..17 | 4165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13769279..13769565 | 849..563 | 1435 | 100 | Minus |
3R | 32079331 | 3R | 13769888..13770093 | 378..173 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 13769623..13769809 | 563..377 | 935 | 100 | Minus |
3R | 32079331 | 3R | 13770371..13770528 | 174..17 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:21:02 has no hits.
BS10092.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:10 Download gff for
BS10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9307-PA | 956..1788 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:23 Download gff for
BS10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9307-PA | 956..1788 | 17..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:48:22 Download gff for
BS10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht5-RA | 1086..1923 | 9..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:14 Download gff for
BS10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht5-RA | 1086..1923 | 9..849 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:14 Download gff for
BS10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13769279..13769565 | 563..849 | 100 | -> | Minus |
3R | 13769624..13769809 | 377..562 | 100 | -> | Minus |
3R | 13769890..13770093 | 173..376 | 100 | -> | Minus |
3R | 13770373..13770533 | 9..172 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:48:22 Download gff for
BS10092.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9596095..9596255 | 9..172 | 97 | | Minus |
arm_3R | 9595001..9595287 | 563..849 | 100 | -> | Minus |
arm_3R | 9595346..9595531 | 377..562 | 100 | -> | Minus |
arm_3R | 9595612..9595815 | 173..376 | 100 | -> | Minus |
BS10092.5prime Sequence
875 bp (816 high quality bases) assembled on 2006-04-19
> BS10092.5prime
GAAGTTATCAGTCGACATGGTTCGATATATTCCGCTCCTACTCCTGGGAG
TGCTGTGCTCCTGGCCAGCTGCCACTGTGGCCAGTGACCAGGCTTCCCGC
ATCGTCTGCTACTTTAGCAACTGGGCCGTGTATCGAACTGGAATCGGTCG
CTATGGATTGGAGGATGTGCCCGCCGACCTGTGCACCCACATCATCTACT
CCTTTATTGGTGTTAACGATAAGAGCTGGGATGTGCTGGTGATCGATCCT
GAGTTGGATGTGGATCAGGGTGGCTTCAGCAAGTTTACACAATTGAAGAA
ATCTAATCCCAATGTGAAGCTCGAGATAGCAGTGGGTGGCTGGGCGGAAG
GTGGCTCCAAGTACTCACAAATGGTGGCTGTTCGCGATCGCCGGCAAAGT
TTCATACGCAGTGTGGTACGCTTTATGAAGCAGTACAACTTCGATGGATT
CGACTTGGACTGGGAGTATCCGGGAGCCACGGATCGCGGTGGCAACTATG
GGGATAAGGACAAGTTCCTTTATTTTGTTGAGGAACTGCGACGTGCCTTC
GATCGCGAGGGTCGCGGATGGGAAATCACCATGGCGGTGCCCGTTGCCAA
GTTCCGGCTGAACGAAGGTTACCACGTTCCGGAATTGTGCGAAGCGCTGG
ATGCCATTCACGCCATGACCTATGACCTGCGAGGAAACTGGGCCGGATTC
GCCGATGTGCACAGTCCACTCTATAAGCGAAAGCACGACCAATACGCCTA
CGAGAAACTGAATGTGAACGACGGCCTTGCGCTGTGGGAGGAGATGGGCT
GCCCGGCCAACAAGCTGGTGGTGGGTGTTCCCTTCTACGGTCGGACGTTC
ACGCTGAGCAACTCGAACAAGAACT
BS10092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9307-PA | 1788 | CG9307-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht5-RA | 2122 | CG9307-RA | 131..989 | 17..875 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13768091..13768713 | 20..642 | 3115 | 100 | Plus |
3R | 32079331 | 3R | 13768861..13768984 | 643..766 | 620 | 100 | Plus |
3R | 32079331 | 3R | 13769073..13769182 | 766..875 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:36:37 has no hits.
BS10092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:11 Download gff for
BS10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9307-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:24 Download gff for
BS10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9307-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:37 Download gff for
BS10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht5-RA | 128..989 | 14..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:48 Download gff for
BS10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht5-RA | 128..989 | 14..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:48 Download gff for
BS10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13768091..13768713 | 20..642 | 100 | -> | Plus |
3R | 13768861..13768984 | 643..766 | 100 | -> | Plus |
3R | 13769074..13769182 | 767..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:37 Download gff for
BS10092.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9593813..9594435 | 20..642 | 100 | -> | Plus |
arm_3R | 9594583..9594706 | 643..766 | 100 | -> | Plus |
arm_3R | 9594796..9594904 | 767..875 | 100 | | Plus |
BS10092.complete Sequence
1820 bp assembled on 2007-10-31
GenBank Submission: FJ636559
> BS10092.complete
GAAGTTATCAGTCGACATGGTTCGATATATTCCGCTCCTACTCCTGGGAG
TGCTGTGCTCCTGGCCAGCTGCCACTGTGGCCAGTGACCAGGCTTCCCGC
ATCGTCTGCTACTTTAGCAACTGGGCCGTGTATCGAACTGGAATCGGTCG
CTATGGATTGGAGGATGTGCCCGCCGACCTGTGCACCCACATCATCTACT
CCTTTATTGGTGTTAACGATAAGAGCTGGGATGTGCTGGTGATCGATCCT
GAGTTGGATGTGGATCAGGGTGGCTTCAGCAAGTTTACACAATTGAAGAA
ATCTAATCCCAATGTGAAGCTCGAGATAGCAGTGGGTGGCTGGGCGGAAG
GTGGCTCCAAGTACTCACAAATGGTGGCTGTTCGCGATCGCCGGCAAAGT
TTCATACGCAGTGTGGTACGCTTTATGAAGCAGTACAACTTCGATGGATT
CGACTTGGACTGGGAGTATCCGGGAGCCACGGATCGCGGTGGCAACTATG
GGGATAAGGACAAGTTCCTTTATTTTGTTGAGGAACTGCGACGTGCCTTC
GATCGCGAGGGTCGCGGATGGGAAATCACCATGGCGGTGCCCGTTGCCAA
GTTCCGGCTGAACGAAGGTTACCACGTTCCGGAATTGTGCGAAGCGCTGG
ATGCCATTCACGCCATGACCTATGACCTGCGAGGAAACTGGGCCGGATTC
GCCGATGTGCACAGTCCACTCTATAAGCGAAAGCACGACCAATACGCCTA
CGAGAAACTGAATGTGAACGACGGCCTTGCGCTGTGGGAGGAGATGGGCT
GCCCGGCCAACAAGCTGGTGGTGGGTGTTCCCTTCTACGGTCGGACGTTC
ACGCTGAGCAACTCGAACAAGAACTACAACATGGGCACCTACATCAATAA
GGAGGCAGGCGGCGGAGCTCCGGGTCCCTACACGAATGCCAGCGGCTTTC
TGGCCTACTACGAAATTTGCACCGAGGTGATGGACAAGTCCAAGGGATGG
ACGGTAGAGTGGGATGACGCTGGCATGGTGCCCTACACCTACAAGGACAC
ACAGTGGGTGGGCTACGAGAACGAGGCATCCATACAGATCAAGATGGACT
TTATCAAGCAGCGGGGATACGCTGGTGCCATGACCTGGGCCATAGATATG
GACGACTTCCATGGAATGTGCGGCAGGAAGAACGGCCTAACGCAAATCCT
GTACGACAACATGAAGAACTATCGGGTTCCGGAACCTACAAGGCAGACAA
CACCAAGGCCTGAGTGGGCAAAGCCGCCAGCAACACCGCCAAATCCAGAT
GAGGGCGCAGTGGTGGCACCAACTACTAGCACTACCAAGCGGCCAAAACC
AAAACCGAAGCCAACTTCAAGTCCATTGAGCCCAACATCCGCTCCAGGTC
CTGTTCCAACTGTTGGCAGTAGCACTCCGAAGCCAACCACAAAGAAGCCC
AAAAAGCCAAAGAAGACAACAACCACCACAACAACCACTCCTGCTCCGGA
AAAGAGCACTGAGGAGCCAGAAGAAGTTGTTTACCCAGTGGATCCAGTGG
AGCCCACTGATCCCGAGCAGCCTATGGGACCGCAGTTCGATCCCAACGAG
ATCGATTGTACCAACCGTGACTTTGTACCACATCCCAATTGCCGAAAGTA
CTTCCGCTGTGTCCATGGCAAGCCCGTTGAATTCGAGTGCAAGGAGGGAA
CGGCCTTCCACACGGTCCTGAATGTCTGCGATTGGATCGAGAACAGCGAC
CGTTACTACTGCAGTCGAATGAAGAACAAGGAGAAGGGCAACGAGGCCCA
TTAAAAGCTTTCTAGACCAT
BS10092.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht5-RA | 1788 | CG9307-PA | 1..1788 | 17..1804 | 8940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht5-RA | 2122 | CG9307-RA | 131..1918 | 17..1804 | 8940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13768091..13768713 | 20..642 | 3115 | 100 | Plus |
3R | 32079331 | 3R | 13769073..13769565 | 766..1258 | 2465 | 100 | Plus |
3R | 32079331 | 3R | 13769888..13770093 | 1443..1648 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 13769623..13769809 | 1258..1444 | 935 | 100 | Plus |
3R | 32079331 | 3R | 13770371..13770528 | 1647..1804 | 790 | 100 | Plus |
3R | 32079331 | 3R | 13768861..13768984 | 643..766 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:17:04 has no hits.
BS10092.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:58 Download gff for
BS10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht5-RA | 1..1788 | 17..1804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:11 Download gff for
BS10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht5-RA | 126..1921 | 14..1812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:35 Download gff for
BS10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht5-RA | 131..1916 | 17..1802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:04 Download gff for
BS10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht5-RA | 129..1914 | 17..1802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:13 Download gff for
BS10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht5-RA | 131..1916 | 17..1802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:13 Download gff for
BS10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13768088..13768713 | 17..642 | 99 | -> | Plus |
3R | 13768861..13768984 | 643..766 | 100 | -> | Plus |
3R | 13769074..13769565 | 767..1258 | 100 | -> | Plus |
3R | 13769624..13769809 | 1259..1444 | 100 | -> | Plus |
3R | 13769890..13770093 | 1445..1648 | 100 | -> | Plus |
3R | 13770373..13770526 | 1649..1802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:35 Download gff for
BS10092.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9596095..9596248 | 1649..1802 | 100 | | Plus |
arm_3R | 9593810..9594435 | 17..642 | 99 | -> | Plus |
arm_3R | 9594583..9594706 | 643..766 | 100 | -> | Plus |
arm_3R | 9594796..9595287 | 767..1258 | 100 | -> | Plus |
arm_3R | 9595346..9595531 | 1259..1444 | 100 | -> | Plus |
arm_3R | 9595612..9595815 | 1445..1648 | 100 | -> | Plus |
BS10092.pep Sequence
Translation from 16 to 1803
> BS10092.pep
MVRYIPLLLLGVLCSWPAATVASDQASRIVCYFSNWAVYRTGIGRYGLED
VPADLCTHIIYSFIGVNDKSWDVLVIDPELDVDQGGFSKFTQLKKSNPNV
KLEIAVGGWAEGGSKYSQMVAVRDRRQSFIRSVVRFMKQYNFDGFDLDWE
YPGATDRGGNYGDKDKFLYFVEELRRAFDREGRGWEITMAVPVAKFRLNE
GYHVPELCEALDAIHAMTYDLRGNWAGFADVHSPLYKRKHDQYAYEKLNV
NDGLALWEEMGCPANKLVVGVPFYGRTFTLSNSNKNYNMGTYINKEAGGG
APGPYTNASGFLAYYEICTEVMDKSKGWTVEWDDAGMVPYTYKDTQWVGY
ENEASIQIKMDFIKQRGYAGAMTWAIDMDDFHGMCGRKNGLTQILYDNMK
NYRVPEPTRQTTPRPEWAKPPATPPNPDEGAVVAPTTSTTKRPKPKPKPT
SSPLSPTSAPGPVPTVGSSTPKPTTKKPKKPKKTTTTTTTTPAPEKSTEE
PEEVVYPVDPVEPTDPEQPMGPQFDPNEIDCTNRDFVPHPNCRKYFRCVH
GKPVEFECKEGTAFHTVLNVCDWIENSDRYYCSRMKNKEKGNEAH*
BS10092.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht5-PA | 595 | CG9307-PA | 1..595 | 1..595 | 3281 | 100 | Plus |
Cht6-PF | 1367 | CG43374-PF | 13..559 | 10..576 | 795 | 33.7 | Plus |
Cht6-PG | 1580 | CG43374-PG | 13..559 | 10..576 | 795 | 33.7 | Plus |
Cht6-PH | 2225 | CG43374-PH | 13..559 | 10..576 | 795 | 33.7 | Plus |
Cht6-PI | 2574 | CG43374-PI | 13..559 | 10..576 | 795 | 33.7 | Plus |