Clone BS10092 Report

Search the DGRC for BS10092

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:100
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptCht5-RA
Protein status:BS10092.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10092.3prime Sequence

849 bp (805 high quality bases) assembled on 2006-04-19

> BS10092.3prime
ATGGTCTAGAAAGCTTTTAATGGGCCTCGTTGCCCTTCTCCTTGTTCTTC
ATTCGACTGCAGTAGTAACGGTCGCTGTTCTCGATCCAATCGCAGACATT
CAGGACCGTGTGGAAGGCCGTTCCCTCCTTGCACTCGAATTCAACGGGCT
TGCCATGGACACAGCGGAAGTACTTTCGGCAATTGGGATGTGGTACAAAG
TCACGGTTGGTACAATCGATCTCGTTGGGATCGAACTGCGGTCCCATAGG
CTGCTCGGGATCAGTGGGCTCCACTGGATCCACTGGGTAAACAACTTCTT
CTGGCTCCTCAGTGCTCTTTTCCGGAGCAGGAGTGGTTGTTGTGGTGGTT
GTTGTCTTCTTTGGCTTTTTGGGCTTCTTTGTGGTTGGCTTCGGAGTGCT
ACTGCCAACAGTTGGAACAGGACCTGGAGCGGATGTTGGGCTCAATGGAC
TTGAAGTTGGCTTCGGTTTTGGTTTTGGCCGCTTGGTAGTGCTAGTAGTT
GGTGCCACCACTGCGCCCTCATCTGGATTTGGCGGTGTTGCTGGCGGCTT
TGCCCACTCAGGCCTTGGTGTTGTCTGCCTTGTAGGTTCCGGAACCCGAT
AGTTCTTCATGTTGTCGTACAGGATTTGCGTTAGGCCGTTCTTCCTGCCG
CACATTCCATGGAAGTCGTCCATATCTATGGCCCAGGTCATGGCACCAGC
GTATCCCCGCTGCTTGATAAAGTCCATCTTGATCTGTATGGATGCCTCGT
TCTCGTAGCCCACCCACTGTGTGTCCTTGTAGGTGTAGGGCACCATGCCA
GCGTCATCCCACTCTACCGTCCATCCCTTGGACTTGTCCATCACCTCGG

BS10092.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9307-PA 1788 CG9307-RA 956..1788 849..17 4165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cht5-RA 2122 CG9307-RA 1086..1918 849..17 4165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13769279..13769565 849..563 1435 100 Minus
3R 32079331 3R 13769888..13770093 378..173 1030 100 Minus
3R 32079331 3R 13769623..13769809 563..377 935 100 Minus
3R 32079331 3R 13770371..13770528 174..17 790 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:21:02 has no hits.

BS10092.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:10 Download gff for BS10092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9307-PA 956..1788 17..849 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:23 Download gff for BS10092.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9307-PA 956..1788 17..849 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:48:22 Download gff for BS10092.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 1086..1923 9..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:14 Download gff for BS10092.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 1086..1923 9..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:14 Download gff for BS10092.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13769279..13769565 563..849 100 -> Minus
3R 13769624..13769809 377..562 100 -> Minus
3R 13769890..13770093 173..376 100 -> Minus
3R 13770373..13770533 9..172 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:48:22 Download gff for BS10092.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9596095..9596255 9..172 97   Minus
arm_3R 9595001..9595287 563..849 100 -> Minus
arm_3R 9595346..9595531 377..562 100 -> Minus
arm_3R 9595612..9595815 173..376 100 -> Minus

BS10092.5prime Sequence

875 bp (816 high quality bases) assembled on 2006-04-19

> BS10092.5prime
GAAGTTATCAGTCGACATGGTTCGATATATTCCGCTCCTACTCCTGGGAG
TGCTGTGCTCCTGGCCAGCTGCCACTGTGGCCAGTGACCAGGCTTCCCGC
ATCGTCTGCTACTTTAGCAACTGGGCCGTGTATCGAACTGGAATCGGTCG
CTATGGATTGGAGGATGTGCCCGCCGACCTGTGCACCCACATCATCTACT
CCTTTATTGGTGTTAACGATAAGAGCTGGGATGTGCTGGTGATCGATCCT
GAGTTGGATGTGGATCAGGGTGGCTTCAGCAAGTTTACACAATTGAAGAA
ATCTAATCCCAATGTGAAGCTCGAGATAGCAGTGGGTGGCTGGGCGGAAG
GTGGCTCCAAGTACTCACAAATGGTGGCTGTTCGCGATCGCCGGCAAAGT
TTCATACGCAGTGTGGTACGCTTTATGAAGCAGTACAACTTCGATGGATT
CGACTTGGACTGGGAGTATCCGGGAGCCACGGATCGCGGTGGCAACTATG
GGGATAAGGACAAGTTCCTTTATTTTGTTGAGGAACTGCGACGTGCCTTC
GATCGCGAGGGTCGCGGATGGGAAATCACCATGGCGGTGCCCGTTGCCAA
GTTCCGGCTGAACGAAGGTTACCACGTTCCGGAATTGTGCGAAGCGCTGG
ATGCCATTCACGCCATGACCTATGACCTGCGAGGAAACTGGGCCGGATTC
GCCGATGTGCACAGTCCACTCTATAAGCGAAAGCACGACCAATACGCCTA
CGAGAAACTGAATGTGAACGACGGCCTTGCGCTGTGGGAGGAGATGGGCT
GCCCGGCCAACAAGCTGGTGGTGGGTGTTCCCTTCTACGGTCGGACGTTC
ACGCTGAGCAACTCGAACAAGAACT

BS10092.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9307-PA 1788 CG9307-RA 1..859 17..875 4295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cht5-RA 2122 CG9307-RA 131..989 17..875 4295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13768091..13768713 20..642 3115 100 Plus
3R 32079331 3R 13768861..13768984 643..766 620 100 Plus
3R 32079331 3R 13769073..13769182 766..875 550 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:36:37 has no hits.

BS10092.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:11 Download gff for BS10092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9307-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:24 Download gff for BS10092.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9307-PA 1..859 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:37 Download gff for BS10092.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 128..989 14..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:48 Download gff for BS10092.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 128..989 14..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:48 Download gff for BS10092.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13768091..13768713 20..642 100 -> Plus
3R 13768861..13768984 643..766 100 -> Plus
3R 13769074..13769182 767..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:37 Download gff for BS10092.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9593813..9594435 20..642 100 -> Plus
arm_3R 9594583..9594706 643..766 100 -> Plus
arm_3R 9594796..9594904 767..875 100   Plus

BS10092.complete Sequence

1820 bp assembled on 2007-10-31

GenBank Submission: FJ636559

> BS10092.complete
GAAGTTATCAGTCGACATGGTTCGATATATTCCGCTCCTACTCCTGGGAG
TGCTGTGCTCCTGGCCAGCTGCCACTGTGGCCAGTGACCAGGCTTCCCGC
ATCGTCTGCTACTTTAGCAACTGGGCCGTGTATCGAACTGGAATCGGTCG
CTATGGATTGGAGGATGTGCCCGCCGACCTGTGCACCCACATCATCTACT
CCTTTATTGGTGTTAACGATAAGAGCTGGGATGTGCTGGTGATCGATCCT
GAGTTGGATGTGGATCAGGGTGGCTTCAGCAAGTTTACACAATTGAAGAA
ATCTAATCCCAATGTGAAGCTCGAGATAGCAGTGGGTGGCTGGGCGGAAG
GTGGCTCCAAGTACTCACAAATGGTGGCTGTTCGCGATCGCCGGCAAAGT
TTCATACGCAGTGTGGTACGCTTTATGAAGCAGTACAACTTCGATGGATT
CGACTTGGACTGGGAGTATCCGGGAGCCACGGATCGCGGTGGCAACTATG
GGGATAAGGACAAGTTCCTTTATTTTGTTGAGGAACTGCGACGTGCCTTC
GATCGCGAGGGTCGCGGATGGGAAATCACCATGGCGGTGCCCGTTGCCAA
GTTCCGGCTGAACGAAGGTTACCACGTTCCGGAATTGTGCGAAGCGCTGG
ATGCCATTCACGCCATGACCTATGACCTGCGAGGAAACTGGGCCGGATTC
GCCGATGTGCACAGTCCACTCTATAAGCGAAAGCACGACCAATACGCCTA
CGAGAAACTGAATGTGAACGACGGCCTTGCGCTGTGGGAGGAGATGGGCT
GCCCGGCCAACAAGCTGGTGGTGGGTGTTCCCTTCTACGGTCGGACGTTC
ACGCTGAGCAACTCGAACAAGAACTACAACATGGGCACCTACATCAATAA
GGAGGCAGGCGGCGGAGCTCCGGGTCCCTACACGAATGCCAGCGGCTTTC
TGGCCTACTACGAAATTTGCACCGAGGTGATGGACAAGTCCAAGGGATGG
ACGGTAGAGTGGGATGACGCTGGCATGGTGCCCTACACCTACAAGGACAC
ACAGTGGGTGGGCTACGAGAACGAGGCATCCATACAGATCAAGATGGACT
TTATCAAGCAGCGGGGATACGCTGGTGCCATGACCTGGGCCATAGATATG
GACGACTTCCATGGAATGTGCGGCAGGAAGAACGGCCTAACGCAAATCCT
GTACGACAACATGAAGAACTATCGGGTTCCGGAACCTACAAGGCAGACAA
CACCAAGGCCTGAGTGGGCAAAGCCGCCAGCAACACCGCCAAATCCAGAT
GAGGGCGCAGTGGTGGCACCAACTACTAGCACTACCAAGCGGCCAAAACC
AAAACCGAAGCCAACTTCAAGTCCATTGAGCCCAACATCCGCTCCAGGTC
CTGTTCCAACTGTTGGCAGTAGCACTCCGAAGCCAACCACAAAGAAGCCC
AAAAAGCCAAAGAAGACAACAACCACCACAACAACCACTCCTGCTCCGGA
AAAGAGCACTGAGGAGCCAGAAGAAGTTGTTTACCCAGTGGATCCAGTGG
AGCCCACTGATCCCGAGCAGCCTATGGGACCGCAGTTCGATCCCAACGAG
ATCGATTGTACCAACCGTGACTTTGTACCACATCCCAATTGCCGAAAGTA
CTTCCGCTGTGTCCATGGCAAGCCCGTTGAATTCGAGTGCAAGGAGGGAA
CGGCCTTCCACACGGTCCTGAATGTCTGCGATTGGATCGAGAACAGCGAC
CGTTACTACTGCAGTCGAATGAAGAACAAGGAGAAGGGCAACGAGGCCCA
TTAAAAGCTTTCTAGACCAT

BS10092.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cht5-RA 1788 CG9307-PA 1..1788 17..1804 8940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cht5-RA 2122 CG9307-RA 131..1918 17..1804 8940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13768091..13768713 20..642 3115 100 Plus
3R 32079331 3R 13769073..13769565 766..1258 2465 100 Plus
3R 32079331 3R 13769888..13770093 1443..1648 1030 100 Plus
3R 32079331 3R 13769623..13769809 1258..1444 935 100 Plus
3R 32079331 3R 13770371..13770528 1647..1804 790 100 Plus
3R 32079331 3R 13768861..13768984 643..766 620 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:17:04 has no hits.

BS10092.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:58 Download gff for BS10092.complete
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 1..1788 17..1804 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:11 Download gff for BS10092.complete
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 126..1921 14..1812 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:35 Download gff for BS10092.complete
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 131..1916 17..1802 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:04 Download gff for BS10092.complete
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 129..1914 17..1802 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:13 Download gff for BS10092.complete
Subject Subject Range Query Range Percent Splice Strand
Cht5-RA 131..1916 17..1802 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:13 Download gff for BS10092.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13768088..13768713 17..642 99 -> Plus
3R 13768861..13768984 643..766 100 -> Plus
3R 13769074..13769565 767..1258 100 -> Plus
3R 13769624..13769809 1259..1444 100 -> Plus
3R 13769890..13770093 1445..1648 100 -> Plus
3R 13770373..13770526 1649..1802 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:35 Download gff for BS10092.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9596095..9596248 1649..1802 100   Plus
arm_3R 9593810..9594435 17..642 99 -> Plus
arm_3R 9594583..9594706 643..766 100 -> Plus
arm_3R 9594796..9595287 767..1258 100 -> Plus
arm_3R 9595346..9595531 1259..1444 100 -> Plus
arm_3R 9595612..9595815 1445..1648 100 -> Plus

BS10092.pep Sequence

Translation from 16 to 1803

> BS10092.pep
MVRYIPLLLLGVLCSWPAATVASDQASRIVCYFSNWAVYRTGIGRYGLED
VPADLCTHIIYSFIGVNDKSWDVLVIDPELDVDQGGFSKFTQLKKSNPNV
KLEIAVGGWAEGGSKYSQMVAVRDRRQSFIRSVVRFMKQYNFDGFDLDWE
YPGATDRGGNYGDKDKFLYFVEELRRAFDREGRGWEITMAVPVAKFRLNE
GYHVPELCEALDAIHAMTYDLRGNWAGFADVHSPLYKRKHDQYAYEKLNV
NDGLALWEEMGCPANKLVVGVPFYGRTFTLSNSNKNYNMGTYINKEAGGG
APGPYTNASGFLAYYEICTEVMDKSKGWTVEWDDAGMVPYTYKDTQWVGY
ENEASIQIKMDFIKQRGYAGAMTWAIDMDDFHGMCGRKNGLTQILYDNMK
NYRVPEPTRQTTPRPEWAKPPATPPNPDEGAVVAPTTSTTKRPKPKPKPT
SSPLSPTSAPGPVPTVGSSTPKPTTKKPKKPKKTTTTTTTTPAPEKSTEE
PEEVVYPVDPVEPTDPEQPMGPQFDPNEIDCTNRDFVPHPNCRKYFRCVH
GKPVEFECKEGTAFHTVLNVCDWIENSDRYYCSRMKNKEKGNEAH*

BS10092.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cht5-PA 595 CG9307-PA 1..595 1..595 3281 100 Plus
Cht6-PF 1367 CG43374-PF 13..559 10..576 795 33.7 Plus
Cht6-PG 1580 CG43374-PG 13..559 10..576 795 33.7 Plus
Cht6-PH 2225 CG43374-PH 13..559 10..576 795 33.7 Plus
Cht6-PI 2574 CG43374-PI 13..559 10..576 795 33.7 Plus