Clone Sequence Records
BS10093.5prime Sequence
869 bp (747 high quality bases) assembled on 2006-04-19
> BS10093.5prime
GAAGTTATCAGTCGACATGGCCAAGCGACAGACTTGGGAGCAGATGCGCC
AGATCTTTGTCCAGGCGGTAAACGCAGTGCATCCCGAAAAGGTATTCGCT
GACTTTCAAAAGTTCGATTTGCGGCCTCAAATCGGGGAAAACGCAACGGA
TATATCCATAAAACTCAATGGAGAGCGCCAAGACATCAGCGGCAAGACCT
GCCACATAGTGGGGTTTGGCAAAGCAGTCCTGGGAATGGCCAACAAAGTG
CAACAGGATTTGGGAGCCACCTCGGCCGGTGGAGTCCTCAGTGTACCGGT
AAACACCCTGAAGCAGTTCCAACAACCGGTGGCACCTGGTTTGGTTGTCC
ACGAAGGAGCAGCCAACAATCTGCCGGATGAGAATGCTCTCAAGGCAGCC
CGGGAAATCAAGCAGCTGGCCGAAAAGATGACTGCCCAGGACATCCTCTT
CGTCTTCATCTCCGGTGGCGGTTCTGCCCTTTTGCCCTTGCCCCGGTCAC
CTTTGACGCTGGAGGACAAGCGCAGCATAGCGGATAAGCTCATGAAGCGG
GGAGCCAGCATACAGGAGATCAATGCTGTCAGGATTGCTTGCTCGGACAT
AAAGGGCGGTCGCTTGGCCAGGTTGGCCGGCCAGGCGGGACTCCTGGTGA
CCTTTGTGCTCAGCGACATCATCGGTGATCCCTTGGAGCTGATAGCCTGC
GGTCCCACCATACAACCCGAGGCGGCAGCATCTCCATCCGACATCCTTAA
AAAGCATCATGTGTGGGAGGAGCTGTCCCCCGAGATTCGGCGGGTCTTTG
AGCAGCCGGAGGAGCAGAAGAACACATCGCTGCCCGAGCACAAGGTTTTT
GTGGTGGGCAGCAATGTGA
BS10093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9886-PA | 1464 | CG9886-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9886-RB | 3762 | CG9886-RB | 67..919 | 17..869 | 4265 | 100 | Plus |
| CG9886-RA | 2025 | CG9886-RA | 67..919 | 17..869 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2420896..2421748 | 17..869 | 4265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:36:34 has no hits.
BS10093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:13 Download gff for
BS10093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:27 Download gff for
BS10093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:34 Download gff for
BS10093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-RA | 63..918 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:41 Download gff for
BS10093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-RA | 63..918 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:41 Download gff for
BS10093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2420892..2421747 | 9..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:34 Download gff for
BS10093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2420892..2421747 | 9..868 | 99 | | Plus |
BS10093.3prime Sequence
888 bp (808 high quality bases) assembled on 2006-04-19
> BS10093.3prime
ATGGTCTAGAAAGCTTCTACGGCACGACCAGGAAATGCAGATCCATCACA
TTGGTACCCGTGTGTCCAGTGAGCACGTGGTGCTCTCCCTGCGCGAGATT
CTTGTAAAAGTTGTAGCTGTCGCAGTTTCGCAGCGTTTCGGCCAGTTCAT
CGAGGGTATGATCACCCAGATAGGATTCCACCACGCTGCTGTCTCCAAAA
GCTCCGGCCGCATCGGTGGGTCCATCGATGCCGTCGGTTCCGGCGCTCAG
GAAGGTGCAGTCCCGCATGGCCTCGTCGCGGTGCAGAGCCTGCGACATCA
GCAGGGCCAAGTGCTGGCTTCTGCCGCCCAATCCATGGCCAGAAACTTTA
ATGACTGGCTCTCCTCCACAGATCAGGAACAGTGGCTTCTTGCTGCTCAT
GTGGTCCTCTAGGGCCCTCCGAAAAGTCGGATAACTTCTCTCCCCAAAGG
CGTACTTCTCCCTGAGTTGAGGATCCAGTATGCCATGCTGCTTGGCCTCC
TGGATACCGTGCAGCAATCTCTGATAGTCGCCAGCCACTTGAGCCACATC
TCCCTGGACAGCACAACTGAGCACGCACGGAATGTAGCCCAGCCTTTCGG
CCTCATGAGCCGCTGTGGAAGTGGCTATCACATTGCTGCCCACCACAAAA
ACCTTGTGCTCGGGCAGCGATGTGTTCTTCTGCTCCTCCGGCTGCTCAAA
GACCCGCCGAATCTCGGGGGACAGCTCCTCCCACACATGATGCTTTTTAA
GGATGTCGGATGGAGATGCTGCCGCCTCGGGTTGTATGGTGGGACCGCAG
GCTATCAGCTCCAAGGGATCACCGATGATGTCGCTGAGCACAAAGGTCAC
CAGGAGTCCCGCCTGGCCGGCCAACCTGGCCAAGCGAC
BS10093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9886-PA | 1464 | CG9886-RA | 593..1464 | 888..17 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9886-RB | 3762 | CG9886-RB | 659..1530 | 888..17 | 4360 | 100 | Minus |
| CG9886-RA | 2025 | CG9886-RA | 659..1530 | 888..17 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2421488..2422037 | 888..339 | 2735 | 99.8 | Minus |
| 2L | 23513712 | 2L | 2422086..2422415 | 346..17 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:21:42 has no hits.
BS10093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:12 Download gff for
BS10093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-PA | 593..1464 | 17..888 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:26 Download gff for
BS10093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-PA | 593..1464 | 17..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:12:30 Download gff for
BS10093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-RA | 659..1530 | 17..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:07:33 Download gff for
BS10093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-RA | 659..1530 | 17..888 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:07:33 Download gff for
BS10093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2421488..2422029 | 347..888 | 100 | -> | Minus |
| 2L | 2422086..2422415 | 17..346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:12:30 Download gff for
BS10093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2421488..2422029 | 347..888 | 100 | -> | Minus |
| arm_2L | 2422086..2422415 | 17..346 | 100 | | Minus |
BS10093.complete Sequence
1496 bp (1496 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636560
> BS10093.complete
GAAGTTATCAGTCGACATGGCCAAGCGACAGACTTGGGAGCAGATGCGCC
AGATCTTTGTCCAGGCGGTAAACGCAGTGCATCCCGAAAAGGTATTCGCT
GACTTTCAAAAGTTCGATTTGCGGCCTCAAATCGGGGAAAACGCAACGGA
TATATCCATAAAACTCAATGGAGAGCGCCAAGACATCAGCGGCAAGACCT
GCCACATAGTGGGGTTTGGCAAAGCAGTCCTGGGAATGGCCAACAAAGTG
CAACAGGATTTGGGAGCCACCTCGGCCGGTGGAGTCCTCAGTGTACCGGT
AAACACCCTGAAGCAGTTCCAACAACCGGTGGCACCTGGTTTGGTTGTCC
ACGAAGGAGCAGCCAACAATCTGCCGGATGAGAATGCTCTCAAGGCAGCC
CGGGAAATCAAGCAGCTGGCCGAAAAGATGACTGCCCAGGACATCCTCTT
CGTCTTCATCTCCGGTGGCGGTTCTGCCCTTTTGCCCTTGCCCCGGTCAC
CTTTGACGCTGGAGGACAAGCGCAGCATAGCGGATAAGCTCATGAAGCGG
GGAGCCAGCATACAGGAGATCAATGCTGTCAGGATTGCTTGCTCGGACAT
AAAGGGCGGTCGCTTGGCCAGGTTGGCCGGCCAGGCGGGACTCCTGGTGA
CCTTTGTGCTCAGCGACATCATCGGTGATCCCTTGGAGCTGATAGCCTGC
GGTCCCACCATACAACCCGAGGCGGCAGCATCTCCATCCGACATCCTTAA
AAAGCATCATGTGTGGGAGGAGCTGTCCCCCGAGATTCGGCGGGTCTTTG
AGCAGCCGGAGGAGCAGAAGAACACATCGCTGCCCGAGCACAAGGTTTTT
GTGGTGGGCAGCAATGTGATAGCCACTTCCACAGCGGCTCATGAGGCCGA
AAGGCTGGGCTACATTCCGTGCGTGCTCAGTTGTGCTGTCCAGGGAGATG
TGGCTCAAGTGGCTGGCGACTATCAGAGATTGCTGCACGGTATCCAGGAG
GCCAAGCAGCATGGCATACTGGATCCTCAACTCAGGGAGAAGTACGCCTT
TGGGGAGAGAAGTTATCCGACTTTTCGGAGGGCCCTAGAGGACCACATGA
GCAGCAAGAAGCCACTGTTCCTGATCTGTGGAGGAGAGCCAGTCATTAAA
GTTTCTGGCCATGGATTGGGCGGCAGAAGCCAGCACTTGGCCCTGCTGAT
GTCGCAGGCTCTGCACCGCGACGAGGCCATGCGGGACTGCACCTTCCTGA
GCGCCGGAACCGACGGCATCGATGGACCCACCGATGCGGCCGGAGCTTTT
GGAGACAGCAGCGTGGTGGAATCCTATCTGGGTGATCATACCCTCGATGA
ACTGGCCGAAACGCTGCGAAACTGCGACAGCTACAACTTTTACAAGAATC
TCGCGCAGGGAGAGCACCACGTGCTCACTGGACACACGGGTACCAATGTG
ATGGATCTGCATTTCCTGGTCGTGCCGTAGAAGCTTTCTAGACCAT
BS10093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9886-RB | 1464 | CG9886-PB | 1..1464 | 17..1480 | 7320 | 100 | Plus |
| CG9886-RA | 1464 | CG9886-PA | 1..1464 | 17..1480 | 7320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9886-RB | 3762 | CG9886-RB | 67..1530 | 17..1480 | 7320 | 100 | Plus |
| CG9886-RA | 2025 | CG9886-RA | 67..1530 | 17..1480 | 7320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2420896..2422037 | 17..1158 | 5695 | 99.9 | Plus |
| 2L | 23513712 | 2L | 2422086..2422415 | 1151..1480 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:58:19 has no hits.
BS10093.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:08 Download gff for
BS10093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-RA | 1..1464 | 17..1480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:42 Download gff for
BS10093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-RA | 85..1552 | 9..1480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:16 Download gff for
BS10093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-RA | 67..1530 | 17..1480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:15 Download gff for
BS10093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9886-RA | 67..1530 | 17..1480 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:15 Download gff for
BS10093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2420896..2422029 | 17..1150 | 100 | -> | Plus |
| 2L | 2422086..2422415 | 1151..1480 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:16 Download gff for
BS10093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2420896..2422029 | 17..1150 | 100 | -> | Plus |
| arm_2L | 2422086..2422415 | 1151..1480 | 100 | | Plus |
BS10093.pep Sequence
Translation from 16 to 1479
> BS10093.pep
MAKRQTWEQMRQIFVQAVNAVHPEKVFADFQKFDLRPQIGENATDISIKL
NGERQDISGKTCHIVGFGKAVLGMANKVQQDLGATSAGGVLSVPVNTLKQ
FQQPVAPGLVVHEGAANNLPDENALKAAREIKQLAEKMTAQDILFVFISG
GGSALLPLPRSPLTLEDKRSIADKLMKRGASIQEINAVRIACSDIKGGRL
ARLAGQAGLLVTFVLSDIIGDPLELIACGPTIQPEAAASPSDILKKHHVW
EELSPEIRRVFEQPEEQKNTSLPEHKVFVVGSNVIATSTAAHEAERLGYI
PCVLSCAVQGDVAQVAGDYQRLLHGIQEAKQHGILDPQLREKYAFGERSY
PTFRRALEDHMSSKKPLFLICGGEPVIKVSGHGLGGRSQHLALLMSQALH
RDEAMRDCTFLSAGTDGIDGPTDAAGAFGDSSVVESYLGDHTLDELAETL
RNCDSYNFYKNLAQGEHHVLTGHTGTNVMDLHFLVVP*
BS10093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9886-PB | 487 | CG9886-PB | 1..487 | 1..487 | 2507 | 100 | Plus |
| CG9886-PA | 487 | CG9886-PA | 1..487 | 1..487 | 2507 | 100 | Plus |
