Clone Sequence Records
BS10095.3prime Sequence
938 bp (826 high quality bases) assembled on 2006-04-19
> BS10095.3prime
ATGGTCTAGAAAGCTTTTAGAAACCCTTCTGGTACTGCTTGGTCTCCAAC
CGCTGTTGCAACAACTCCAGCTGTCGTTTCGCCTCGCACTGGGGGAAGTT
GTTCAAGTCATAATATTGGGGCGCCAGGCAGCACAACCATTCAGGTTTGA
CATCTGTCACCGTGCGAATGTAGTTCTTTGTAGTCAGCACGAACTCATTG
TAGATGACCCAATCGGGCTTGTGGTCGAGACAAGTCGACGGATGCAGCTG
CACGTTCTGGTTGTCCTTGATGGTCAGATAGTAGCCAGTGCGCTCCAGGT
GGGCCACCTGCATGAAGAAGCCCTGCACGAGGGCCTTTCGGATGTTTACA
TAGTAGTCCTTCGAGGTGAATTCAGTGCTCGTGCGCCGCAAGTTGAAGCG
GTCCATGATTCTAGCCAGCTGCTGGCGCACGTTATCCGCACTCTTTAGCG
AGCGGAAGTTTATGAAGTTCTCGTAGCACCAGTTTGGATCCTCACTGCTC
TGCTTAAAGGCGTGATAGACATTAAGCAACGTCAGGTGGTCTCCGTCAAT
GTGGGCGAATCGCATCTTGGCCTCATCGGCAGCTTTCTTCGCCTCGTTGG
GGCGAACGAAGCATTGTGGAACCGACAACATGGCCGTTATGGAAAGTATT
TCATTAGAGCAGTTATGTTGGCAGCTGGCAATCAGCATTTTGGCCAGCTG
CGGATCCAATGGAAACTCGGACATAACGGCACCCAGGTCTGTAAGATTTC
CGTCATCATCCAGGGCGGCCAGATAGTTGAGCAACTCCAGGGCACGCATC
AAGGTCTCTGGAGCAGGGGGGTCCATAAAATCGAAATGCACCAGATCATC
GATGCCCAACTTCTTGAGCTGCAGAACCACAGTGCCCAAATTGGAACGCA
GAATTTCGGGGGTAGGTGTTGTCCTGCATCTCGTTTTT
BS10095.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11107-PA | 2190 | CG11107-RA | 1296..2190 | 911..17 | 4450 | 99.8 | Minus |
CG11107-PA | 2190 | CG11107-RA | 1270..1299 | 938..909 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11107-RB | 2610 | CG11107-RB | 1474..2394 | 938..17 | 4570 | 99.8 | Minus |
CG11107-RA | 2747 | CG11107-RA | 1611..2531 | 938..17 | 4570 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7390268..7390625 | 498..141 | 1775 | 99.7 | Minus |
2R | 25286936 | 2R | 7389246..7389510 | 886..622 | 1325 | 100 | Minus |
2R | 25286936 | 2R | 7390680..7390807 | 144..17 | 640 | 100 | Minus |
2R | 25286936 | 2R | 7390077..7390201 | 622..498 | 625 | 100 | Minus |
2R | 25286936 | 2R | 7389130..7389182 | 938..885 | 205 | 96.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:58:22 has no hits.
BS10095.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:14 Download gff for
BS10095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11107-PA | 1270..2190 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:28 Download gff for
BS10095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11107-PA | 1270..2190 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:51:17 Download gff for
BS10095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11107-RA | 1611..2531 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:35 Download gff for
BS10095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11107-RA | 1611..2531 | 17..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:35 Download gff for
BS10095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7390680..7390807 | 17..144 | 100 | | Minus |
2R | 7390078..7390200 | 499..621 | 100 | -> | Minus |
2R | 7389130..7389181 | 886..938 | 96 | -> | Minus |
2R | 7389247..7389510 | 622..885 | 100 | -> | Minus |
2R | 7390268..7390621 | 145..498 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:51:17 Download gff for
BS10095.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3276635..3276686 | 886..938 | 96 | -> | Minus |
arm_2R | 3276752..3277015 | 622..885 | 100 | -> | Minus |
arm_2R | 3277583..3277705 | 499..621 | 100 | -> | Minus |
arm_2R | 3277773..3278126 | 145..498 | 100 | -> | Minus |
arm_2R | 3278185..3278312 | 17..144 | 100 | | Minus |
BS10095.5prime Sequence
910 bp (794 high quality bases) assembled on 2006-04-19
> BS10095.5prime
GAAGTTATCAGTCGACATGTCCAAGCGTCGAATCGAAGTGGGGGAGACCT
ACGGCAGCAAGGCGAAGAAGGACCCGGAGGCGTCCTCCTCGTCGGCGGCA
GCCGCTGCCGGCACAGTGGCTCAAATCCTGGGCGGATTCGTGCCCAACAA
GCAACCGCCCACGATGAACCCGCTGACCAACACGCCGTACTCACAACGGT
ACCAGAATCTCTACAAGAAGCGCATTGCGCTGCCCGTGTTCGAGTACCAG
GCGGACTTTATGCGGCTGCTCAGCCTGCACCAGTGTATTGTGCTGGTGGG
CGAGACAGGCTCCGGCAAGACGACCCAGATCCCGCAGTGGTGCGTGGACT
TCGCAGTATCCAAGGGGCGCAAGGGAGTCTCCTGCACACAGCCACGTCGA
GTTGCCGCCATGTCCGTGGCCCAGCGCGTTTCGGAGGAGATGGACGTAAA
ACTGGGCGAAGAGGTCGGCTACTCCATCCGTTTCGAGGACTGCTCCACGG
CCAAGACGCTGCTCAAGTACATGACCGATGGTATGTTGTTGCGCGAGGCC
ATGTCTGATCCCATGCTGGACCAGTACCAGGTCATTCTGCTTGACGAGGC
TCACGAGCGGACCTTGGCCACTGACATTCTAATGGGCGTGCTCAAGGAGG
TCATTCGTCAGCGCAGCGACCTTAAGCTGGTGGTCATGTCCGCCACACTG
GACGCCGGCAAGTTCCAGCAGTATTTCGACAACGCACCGCTCATGAAAGT
GCCCGGTCGCACACATCCCGTGGAGATCTTCTACACGCCCGAACCAGAAA
GAGATTACCTAGAGGCTGCTATTCGCACGGTAATCCAGATACACATGTGC
GAGGAAATTGAGGGTGATATCCTAATGTTTCTCACGGGCCAGGAGGAGAT
TGAGGAGGCT
BS10095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11107-PA | 2190 | CG11107-RA | 1..894 | 17..910 | 4420 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11107-RB | 2610 | CG11107-RB | 204..1098 | 16..910 | 4445 | 99.8 | Plus |
CG11107-RA | 2747 | CG11107-RA | 341..1235 | 16..910 | 4445 | 99.8 | Plus |
l(1)G0007-RA | 3880 | CG32604-RA | 1851..2015 | 383..547 | 285 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7387635..7388430 | 70..865 | 3965 | 99.9 | Plus |
2R | 25286936 | 2R | 7387527..7387581 | 16..70 | 275 | 100 | Plus |
2L | 23513712 | 2L | 19125754..19125896 | 525..383 | 250 | 78.3 | Minus |
2R | 25286936 | 2R | 7388707..7388754 | 863..910 | 225 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:35:05 has no hits.
BS10095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:15 Download gff for
BS10095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11107-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:29 Download gff for
BS10095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11107-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:50:30 Download gff for
BS10095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11107-RA | 341..1235 | 16..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:59 Download gff for
BS10095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11107-RA | 341..1235 | 16..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:59 Download gff for
BS10095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7387527..7387580 | 16..69 | 100 | -> | Plus |
2R | 7387635..7388428 | 70..863 | 99 | -> | Plus |
2R | 7388708..7388754 | 864..910 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:50:30 Download gff for
BS10095.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3275032..3275085 | 16..69 | 100 | -> | Plus |
arm_2R | 3275140..3275933 | 70..863 | 99 | -> | Plus |
arm_2R | 3276213..3276259 | 864..910 | 97 | | Plus |
BS10095.complete Sequence
2222 bp assembled on 2009-08-24
GenBank Submission: KX800862
> BS10095.complete
GAAGTTATCAGTCGACATGTCCAAGCGTCGAATCGAAGTGGGGGAGACCT
ACGGCAGCAAGGCGAAGAAGGACCCGGAGGCGTCCTCCTCGTCGGCGGCA
GCCGCTGCCGGCACAGTGGCTCAAATCCTGGGCGGATTCGTGCCCAACAA
GCAACCGCCCACGATGAACCCGCTGACCAACACGCCGTACTCACAACGGT
ACCAGAATCTCTACAAGAAGCGCATTGCGCTGCCCGTGTTCGAGTACCAG
GCGGACTTTATGCGGCTGCTCAGCCTGCACCAGTGTATTGTGCTGGTGGG
CGAGACAGGCTCCGGCAAGACGACCCAGATCCCGCAGTGGTGCGTGGACT
TCGCAGTATCCAAGGGGCGCAAGGGAGTCTCCTGCACACAGCCACGTCGA
GTTGCCGCCATGTCCGTGGCCCAGCGCGTTTCGGAGGAGATGGACGTAAA
ACTGGGCGAAGAGGTCGGCTACTCCATCCGTTTCGAGGACTGCTCCACGG
CCAAGACGCTGCTCAAGTACATGACCGATGGTATGTTGTTGCGCGAGGCC
ATGTCTGATCCCATGCTGGACCAGTACCAGGTCATTCTGCTTGACGAGGC
TCACGAGCGGACCTTGGCCACTGACATTCTAATGGGCGTGCTCAAGGAGG
TCATTCGTCAGCGCAGCGACCTTAAGCTGGTGGTCATGTCCGCCACACTG
GACGCCGGCAAGTTCCAGCAGTATTTCGACAACGCACCGCTCATGAAAGT
GCCCGGTCGCACACATCCCGTGGAGATCTTCTACACGCCCGAACCAGAAA
GAGATTACCTAGAGGCTGCTATTCGCACGGTAATCCAGATACACATGTGC
GAGGAAATTGAGGGTGATATCCTAATGTTCCTCACGGGCCAGGAGGAGAT
TGAGGAGGCTTGCAAGCGCATCAAGCGCGAGATCGACAATTTGGGCTCAG
AAATTGGAGAGCTGAAATGCATTCCCCTGTACTCGACGCTGCCGCCCAAT
TTGCAGCAGCGCATCTTCGAACCGGCCCCGCCGCCAAATGCTAATGGCGC
AATTGGACGCAAGGTCGTGGTGTCCACCAACATTGCCGAAACCTCGCTGA
CCATTGACGGAGTGGTGTTCGTGATTGATCCAGGCTTCGCCAAGCAAAAG
GTGTACAATCCTCGCATTCGAGTGGAGAGTCTGCTCGTCTCACCCATTTC
AAAAGCGTCTGCGCAGCAGAGATCCGGTCGTGCTGGACGTACGCGTCCTG
GCAAGTGTTTCCGTCTGTACACGGAAAAGGCGTTTAAAAACGAGATGCAG
GACAACACCTACCCCGAAATTCTGCGCTCCAATTTGGGCACTGTGGTTCT
GCAGCTCAAGAAGTTGGGCATCGATGATCTGGTGCATTTCGATTTTATGG
ACCCCCCTGCTCCAGAGACCTTGATGCGTGCCCTGGAGTTGCTCAACTAT
CTGGCCGCCCTGGATGATGACGGAAATCTTACAGACCTGGGTGCCGTTAT
GTCCGAGTTTCCATTGGATCCGCAGCTGGCCAAAATGCTGATTGCCAGCT
GCCAACATAACTGCTCTAATGAAATACTTTCCATAACGGCCATGTTGTCG
GTTCCACAATGCTTCGTTCGCCCCAACGAGGCGAAGAAAGCTGCCGATGA
GGCCAAGATGCGATTCGCCCACATTGACGGAGACCACCTGACGTTGCTTA
ATGTCTATCACGCCTTTAAGCAGAGCAGTGAGGATCCAAACTGGTGCTAC
GAGAACTTCATAAACTTCCGCTCGCTAAAGAGTGCGGATAACGTGCGCCA
GCAGCTGGCTAGAATCATGGACCGCTTCAACTTGCGGCGCACGAGCACTG
AATTCACCTCGAAGGACTACTATGTAAACATCCGAAAGGCCCTCGTGCAG
GGCTTCTTCATGCAGGTGGCCCACCTGGAGCGCACTGGCTACTATCTGAC
CATCAAGGACAACCAGAACGTGCAGCTGCATCCGTCGACTTGTCTCGACC
ACAAGCCCGATTGGGTCATCTACAATGAGTTCGTGCTGACTACAAAGAAC
TACATTCGCACGGTGACAGATGTCAAACCTGAATGGTTGTGCTGCCTGGC
GCCCCAATATTATGACTTGAACAACTTCCCCCAGTGCGAGGCGAAACGAC
AGCTGGAGTTGTTGCAACAGCGGTTGGAGACCAAGCAGTACCAGAAGGGT
TTCTAAAAGCTTTCTAGACCAT
BS10095.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11107-RB | 2190 | CG11107-PB | 1..2190 | 17..2206 | 10935 | 100 | Plus |
CG11107-RA | 2190 | CG11107-PA | 1..2190 | 17..2206 | 10935 | 100 | Plus |
l(1)G0007-RA | 3669 | CG32604-PA | 1750..1914 | 383..547 | 285 | 78.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11107-RB | 2610 | CG11107-RB | 204..2394 | 16..2206 | 10940 | 100 | Plus |
CG11107-RA | 2747 | CG11107-RA | 341..2531 | 16..2206 | 10940 | 100 | Plus |
l(1)G0007-RA | 3880 | CG32604-RA | 1851..2015 | 383..547 | 285 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7387635..7388430 | 70..865 | 3965 | 99.9 | Plus |
2R | 25286936 | 2R | 7388707..7389182 | 863..1338 | 2380 | 100 | Plus |
2R | 25286936 | 2R | 7390268..7390625 | 1725..2082 | 1775 | 99.7 | Plus |
2R | 25286936 | 2R | 7389246..7389510 | 1337..1601 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 7390680..7390807 | 2079..2206 | 640 | 100 | Plus |
2R | 25286936 | 2R | 7390077..7390201 | 1601..1725 | 625 | 100 | Plus |
2R | 25286936 | 2R | 7387527..7387581 | 16..70 | 275 | 100 | Plus |
2L | 23513712 | 2L | 19125754..19125896 | 525..383 | 250 | 78.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:27:16 has no hits.
BS10095.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:28 Download gff for
BS10095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11107-RA | 315..2502 | 17..2204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:05 Download gff for
BS10095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11107-RA | 342..2529 | 17..2204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:57 Download gff for
BS10095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11107-RA | 342..2529 | 17..2204 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:57 Download gff for
BS10095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7387528..7387580 | 17..69 | 100 | -> | Plus |
2R | 7387635..7388428 | 70..863 | 99 | -> | Plus |
2R | 7388708..7389181 | 864..1337 | 100 | -> | Plus |
2R | 7389247..7389510 | 1338..1601 | 100 | -> | Plus |
2R | 7390078..7390200 | 1602..1724 | 100 | -> | Plus |
2R | 7390268..7390621 | 1725..2078 | 100 | -> | Plus |
2R | 7390680..7390805 | 2079..2204 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:05 Download gff for
BS10095.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3275033..3275085 | 17..69 | 100 | -> | Plus |
arm_2R | 3275140..3275933 | 70..863 | 99 | -> | Plus |
arm_2R | 3276213..3276686 | 864..1337 | 100 | -> | Plus |
arm_2R | 3276752..3277015 | 1338..1601 | 100 | -> | Plus |
arm_2R | 3277583..3277705 | 1602..1724 | 100 | -> | Plus |
arm_2R | 3277773..3278126 | 1725..2078 | 100 | -> | Plus |
arm_2R | 3278185..3278310 | 2079..2204 | 100 | | Plus |
BS10095.pep Sequence
Translation from 16 to 2205
> BS10095.pep
MSKRRIEVGETYGSKAKKDPEASSSSAAAAAGTVAQILGGFVPNKQPPTM
NPLTNTPYSQRYQNLYKKRIALPVFEYQADFMRLLSLHQCIVLVGETGSG
KTTQIPQWCVDFAVSKGRKGVSCTQPRRVAAMSVAQRVSEEMDVKLGEEV
GYSIRFEDCSTAKTLLKYMTDGMLLREAMSDPMLDQYQVILLDEAHERTL
ATDILMGVLKEVIRQRSDLKLVVMSATLDAGKFQQYFDNAPLMKVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIHMCEEIEGDILMFLTGQEEIEEACK
RIKREIDNLGSEIGELKCIPLYSTLPPNLQQRIFEPAPPPNANGAIGRKV
VVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQ
QRSGRAGRTRPGKCFRLYTEKAFKNEMQDNTYPEILRSNLGTVVLQLKKL
GIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLGAVMSEFPL
DPQLAKMLIASCQHNCSNEILSITAMLSVPQCFVRPNEAKKAADEAKMRF
AHIDGDHLTLLNVYHAFKQSSEDPNWCYENFINFRSLKSADNVRQQLARI
MDRFNLRRTSTEFTSKDYYVNIRKALVQGFFMQVAHLERTGYYLTIKDNQ
NVQLHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDVKPEWLCCLAPQYYD
LNNFPQCEAKRQLELLQQRLETKQYQKGF*
BS10095.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11107-PB | 729 | CG11107-PB | 1..729 | 1..729 | 3787 | 100 | Plus |
CG11107-PA | 729 | CG11107-PA | 1..729 | 1..729 | 3787 | 100 | Plus |
l(2)37Cb-PA | 894 | CG10689-PA | 236..870 | 56..699 | 1732 | 53.1 | Plus |
pea-PA | 1242 | CG8241-PA | 579..1227 | 65..721 | 1709 | 51.7 | Plus |
l(1)G0007-PA | 1222 | CG32604-PA | 523..1153 | 61..701 | 1484 | 45.7 | Plus |