Clone Sequence Records
BS10103.3prime Sequence
896 bp (833 high quality bases) assembled on 2006-04-19
> BS10103.3prime
ATGGTCTAGAAAGCTTCTAAGGGGTGGCGTCTCCTGGCAAAAGCTGGTTT
TCGGGCGAGTCAACGTCCTCCTCCTTCATATCCTCGGAAGCTTTTTTATC
GGTTTCTTCTTCTGCCAAGAATTCATCCCATTTGGAAAGCCGTTCATGCG
CCTCGACAGCTGATTCCTCAATTTTGTATTTGGTCTTGCCATCCCAGGCC
TCCGCACTTAGTTGCCGCTGTCCAAAATAACGCCCCTGCATCATTTGAAT
GACGAGGTCAGCTTCCTCCGGCGAGGCCATGTTGATCTGGGCTACACCAT
CAGGATGGCGATCATAGATAACCACTTTACGGACCATCCCGCATTTGCTG
CACTCCTCACGCAGATTGTTTTGGTACTCCAATATGAGCTCCACTTCCTT
CTCAAAGAGTTCTGGGGTGAAGAGGTTTTTAATGATGACGGTTTTCTCAT
TCTTTGACCGTTCGCCACGCAATTTATCTGGACGCCAATCAAATAACTTT
TCCTTCATCTTTTGCAATTTCTCTTTGTCCTTCTTCTTGCGTTTGGGCTT
CAGAGCGGGATTGTATTCTCCACGCATTTGGAACTGAGCCCTCTGGACAC
GAATCTTGTGGCCACGCAGATTGTACTCGTCTAAAATTTTCAGCGCCAGA
TTGACACTCTCCACCTTGATGTAATCACACAAGCCATCGCCCTTGATTTG
TCCATCCTTTTCGGCATATAGTTTCAGCTTGAATTTCTGCGTCTGCGGAT
CTCTCATTACCATGCCACACTTGCCCATCAGATCGGCAAACTCATCCATA
GTAATGTCCAGGGGCAAATTGGAGACATACACCTTGGTGTTCTGCAATGG
ATCCATTTCGAACCATTTTGGGGGCTCCTGGGCCTTTCGCTTGCCA
BS10103.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6049-PB | 1671 | CG6049-RB | 792..1671 | 896..17 | 4400 | 100 | Minus |
| CG6049-PC | 1671 | CG6049-RC | 792..1671 | 896..17 | 4400 | 100 | Minus |
| CG6049-PA | 1671 | CG6049-RA | 792..1671 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-RA | 2287 | CG6049-RA | 1095..1974 | 896..17 | 4400 | 100 | Minus |
| barc-RC | 2272 | CG6049-RC | 1080..1959 | 896..17 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21424452..21424656 | 663..867 | 1025 | 100 | Plus |
| 3L | 28110227 | 3L | 21421106..21421292 | 311..497 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 21421359..21421529 | 496..666 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 21420701..21420857 | 17..173 | 785 | 100 | Plus |
| 3L | 28110227 | 3L | 21420918..21421054 | 174..310 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:57:46 has no hits.
BS10103.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:20 Download gff for
BS10103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-PA | 793..1671 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:37 Download gff for
BS10103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-PA | 793..1671 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:51:12 Download gff for
BS10103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 1081..1964 | 9..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:25 Download gff for
BS10103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 1081..1964 | 9..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:25 Download gff for
BS10103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21420696..21420857 | 9..173 | 97 | <- | Plus |
| 3L | 21420918..21421054 | 174..310 | 100 | <- | Plus |
| 3L | 21421106..21421292 | 311..497 | 100 | <- | Plus |
| 3L | 21421361..21421527 | 498..664 | 100 | <- | Plus |
| 3L | 21424454..21424656 | 665..867 | 100 | <- | Plus |
| 3L | 21424718..21424745 | 868..895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:51:12 Download gff for
BS10103.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21413796..21413957 | 9..173 | 97 | <- | Plus |
| arm_3L | 21414018..21414154 | 174..310 | 100 | <- | Plus |
| arm_3L | 21414206..21414392 | 311..497 | 100 | <- | Plus |
| arm_3L | 21414461..21414627 | 498..664 | 100 | <- | Plus |
| arm_3L | 21417554..21417756 | 665..867 | 100 | <- | Plus |
| arm_3L | 21417818..21417845 | 868..895 | 100 | | Plus |
BS10103.5prime Sequence
936 bp (819 high quality bases) assembled on 2006-04-19
> BS10103.5prime
GAAGTTATCAGTCGACATGAGCGACGAAGGTGGCTGTAAATCGGAGCAGT
TAGAGAAATCCGAAGAAGCGGAGGAAAAAAAGGGGGACGCAGAAGGACAG
GAAGCGAAAGCTCCAATTCTCAACCCCATTTCAGTCCCAGAAGTTGATGA
CAAGCCGACGGAAAATAAACCCCAATCGGATAATCACGCGGACAAAACGG
ACGAAACTCCATCTCAGGACTTTGCCGCCTACGAGGAGCACATGACCTAT
GGAGCGGACGGCGGGGCTATATACACGGATCCCAGCACGAAGCAGAAATA
CAAGTGGTGCGCCACCGGAAACAATTGGCAACCCTTAGGCGTTGATGAAG
ATGTTGATGGACAGGCTGAAGATCCCTACGAAAACGAGCACTACAAGTGG
TGTCCCAAATCCCAACAGTGGTTGCCAAAAAAACAGGAAACTGAAACGGA
GCACTACAAGTGGGATGACGAGCAAAAGAAGTGGGTGCCCAAGCACCCGA
ACCCTGGCCAGGAAGGGGTTTGCGGTGTGGATGAGCATGGCGAGCGCACT
TACACCGACAAGGATGGCGTCGAGTTCTTTTGGGATGCAACCAAGAGTGC
TTGGTTCCCCAAGATCGATGATGATTTCATGGCTCGCTACCAAATGAACT
ATGGATTTATTGACAACACATCAGCGGGGGAGAAAGAGAAGGCTGAAAAG
GAGGCGGCTGAGGCCAAGAGAAAGGAGGAGGAACTCAAGCGTATGACGGC
AGAGGCGGAAGCTGCTATGTCTAGAGACAATCCAGCATCCAGCGCTGCAG
TGCCCACTGGCAAGCGAAAGGCCCAGGAGCCCCCAAAATGGTTCGAAATG
GATCCATTGCAGAACACCAAGGTGTATGTCTCCNATTTGCCCCTGGACAT
TACTATGGATGAGTTTGCCGATCTGATGGGCAAGTG
BS10103.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6049-PB | 1671 | CG6049-RB | 1..920 | 17..936 | 4581 | 99.8 | Plus |
| CG6049-PC | 1671 | CG6049-RC | 1..920 | 17..936 | 4581 | 99.8 | Plus |
| CG6049-PA | 1671 | CG6049-RA | 1..920 | 17..936 | 4581 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-RA | 2287 | CG6049-RA | 304..1223 | 17..936 | 4589 | 99.9 | Plus |
| barc-RC | 2272 | CG6049-RC | 289..1208 | 17..936 | 4589 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21424718..21425537 | 836..17 | 4100 | 100 | Minus |
| 3L | 28110227 | 3L | 21424557..21424656 | 936..837 | 489 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:35:02 has no hits.
BS10103.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:22 Download gff for
BS10103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:39 Download gff for
BS10103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:50:27 Download gff for
BS10103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 289..1208 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:50 Download gff for
BS10103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 289..1208 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:50 Download gff for
BS10103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21424557..21424656 | 837..936 | 99 | <- | Minus |
| 3L | 21424718..21425537 | 17..836 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:50:27 Download gff for
BS10103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21417657..21417756 | 837..936 | 99 | <- | Minus |
| arm_3L | 21417818..21418637 | 17..836 | 100 | | Minus |
BS10103.complete Sequence
1703 bp (1703 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636561
> BS10103.complete
GAAGTTATCAGTCGACATGAGCGACGAAGGTGGCTGTAAATCGGAGCAGT
TAGAGAAATCCGAAGAAGCGGAGGAAAAAAAGGGGGACGCAGAAGGACAG
GAAGCGAAAGCTCCAATTCTCAACCCCATTTCAGTCCCAGAAGTTGATGA
CAAGCCGACGGAAAATAAACCCCAATCGGATAATCACGCGGACAAAACGG
ACGAAACTCCATCTCAGGACTTTGCCGCCTACGAGGAGCACATGACCTAT
GGAGCGGACGGCGGGGCTATATACACGGATCCCAGCACGAAGCAGAAATA
CAAGTGGTGCGCCACCGGAAACAATTGGCAACCCTTAGGCGTTGATGAAG
ATGTTGATGGACAGGCTGAAGATCCCTACGAAAACGAGCACTACAAGTGG
TGTCCCAAATCCCAACAGTGGTTGCCAAAAAAACAGGAAACTGAAACGGA
GCACTACAAGTGGGATGACGAGCAAAAGAAGTGGGTGCCCAAGCACCCGA
ACCCTGGCCAGGAAGGGGTTTGCGGTGTGGATGAGCATGGCGAGCGCACT
TACACCGACAAGGATGGCGTCGAGTTCTTTTGGGATGCAACCAAGAGTGC
TTGGTTCCCCAAGATCGATGATGATTTCATGGCTCGCTACCAAATGAACT
ATGGATTTATTGACAACACATCAGCGGGGGAGAAAGAGAAGGCTGAAAAG
GAGGCGGCTGAGGCCAAGAGAAAGGAGGAGGAACTCAAGCGTATGACGGC
AGAGGCGGAAGCTGCTATGTCTAGAGACAATCCAGCATCCAGCGCTGCAG
TGCCCACTGGCAAGCGAAAGGCCCAGGAGCCCCCAAAATGGTTCGAAATG
GATCCATTGCAGAACACCAAGGTGTATGTCTCCAATTTGCCCCTGGACAT
TACTATGGATGAGTTTGCCGATCTGATGGGCAAGTGTGGCATGGTAATGA
GAGATCCGCAGACGCAGAAATTCAAGCTGAAACTATATGCCGAAAAGGAT
GGACAAATCAAGGGCGATGGCTTGTGTGATTACATCAAGGTGGAGAGTGT
CAATCTGGCGCTGAAAATTTTAGACGAGTACAATCTGCGTGGCCACAAGA
TTCGTGTCCAGAGGGCTCAGTTCCAAATGCGTGGAGAATACAATCCCGCT
CTGAAGCCCAAACGCAAGAAGAAGGACAAAGAGAAATTGCAAAAGATGAA
GGAAAAGTTATTTGATTGGCGTCCAGATAAATTGCGTGGCGAACGGTCAA
AGAATGAGAAAACCGTCATCATTAAAAACCTCTTCACCCCAGAACTCTTT
GAGAAGGAAGTGGAGCTCATATTGGAGTACCAAAACAATCTGCGTGAGGA
GTGCAGCAAATGCGGGATGGTCCGTAAAGTGGTTATCTATGATCGCCATC
CTGATGGTGTAGCCCAGATCAACATGGCCTCGCCGGAGGAAGCTGACCTC
GTCATTCAAATGATGCAGGGGCGTTATTTTGGACAGCGGCAACTAAGTGC
GGAGGCCTGGGATGGCAAGACCAAATACAAAATTGAGGAATCAGCTGTCG
AGGCGCATGAACGGCTTTCCAAATGGGATGAATTCTTGGCAGAAGAAGAA
ACCGATAAAAAAGCTTCCGAGGATATGAAGGAGGAGGACGTTGACTCGCC
CGAAAACCAGCTTTTGCCAGGAGACGCCACCCCTTAGAAGCTTTCTAGAC
CAT
BS10103.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-RA | 1671 | CG6049-PA | 1..1671 | 17..1687 | 8355 | 100 | Plus |
| barc-RC | 1671 | CG6049-PC | 1..1671 | 17..1687 | 8355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-RA | 2287 | CG6049-RA | 304..1974 | 17..1687 | 8355 | 100 | Plus |
| barc-RC | 2272 | CG6049-RC | 289..1959 | 17..1687 | 8355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21424718..21425537 | 836..17 | 4100 | 100 | Minus |
| 3L | 28110227 | 3L | 21424452..21424656 | 1041..837 | 1025 | 100 | Minus |
| 3L | 28110227 | 3L | 21421106..21421292 | 1393..1207 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 21421359..21421529 | 1208..1038 | 855 | 100 | Minus |
| 3L | 28110227 | 3L | 21420701..21420857 | 1687..1531 | 785 | 100 | Minus |
| 3L | 28110227 | 3L | 21420918..21421054 | 1530..1394 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:01:42 has no hits.
BS10103.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:09 Download gff for
BS10103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-RA | 1..1671 | 17..1687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:44 Download gff for
BS10103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-RA | 337..2012 | 17..1695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:49 Download gff for
BS10103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 289..1959 | 17..1687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:09 Download gff for
BS10103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6049-RA | 337..2012 | 17..1695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:36 Download gff for
BS10103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| barc-RC | 289..1959 | 17..1687 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:36 Download gff for
BS10103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21420701..21420857 | 1531..1687 | 100 | <- | Minus |
| 3L | 21420918..21421054 | 1394..1530 | 100 | <- | Minus |
| 3L | 21421106..21421292 | 1207..1393 | 100 | <- | Minus |
| 3L | 21421361..21421527 | 1040..1206 | 100 | <- | Minus |
| 3L | 21424454..21424656 | 837..1039 | 100 | <- | Minus |
| 3L | 21424718..21425537 | 17..836 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:49 Download gff for
BS10103.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21413801..21413957 | 1531..1687 | 100 | <- | Minus |
| arm_3L | 21414018..21414154 | 1394..1530 | 100 | <- | Minus |
| arm_3L | 21414206..21414392 | 1207..1393 | 100 | <- | Minus |
| arm_3L | 21414461..21414627 | 1040..1206 | 100 | <- | Minus |
| arm_3L | 21417554..21417756 | 837..1039 | 100 | <- | Minus |
| arm_3L | 21417818..21418637 | 17..836 | 100 | | Minus |
BS10103.pep Sequence
Translation from 16 to 1686
> BS10103.pep
MSDEGGCKSEQLEKSEEAEEKKGDAEGQEAKAPILNPISVPEVDDKPTEN
KPQSDNHADKTDETPSQDFAAYEEHMTYGADGGAIYTDPSTKQKYKWCAT
GNNWQPLGVDEDVDGQAEDPYENEHYKWCPKSQQWLPKKQETETEHYKWD
DEQKKWVPKHPNPGQEGVCGVDEHGERTYTDKDGVEFFWDATKSAWFPKI
DDDFMARYQMNYGFIDNTSAGEKEKAEKEAAEAKRKEEELKRMTAEAEAA
MSRDNPASSAAVPTGKRKAQEPPKWFEMDPLQNTKVYVSNLPLDITMDEF
ADLMGKCGMVMRDPQTQKFKLKLYAEKDGQIKGDGLCDYIKVESVNLALK
ILDEYNLRGHKIRVQRAQFQMRGEYNPALKPKRKKKDKEKLQKMKEKLFD
WRPDKLRGERSKNEKTVIIKNLFTPELFEKEVELILEYQNNLREECSKCG
MVRKVVIYDRHPDGVAQINMASPEEADLVIQMMQGRYFGQRQLSAEAWDG
KTKYKIEESAVEAHERLSKWDEFLAEEETDKKASEDMKEEDVDSPENQLL
PGDATP*
BS10103.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| barc-PA | 556 | CG6049-PA | 1..556 | 1..556 | 2989 | 100 | Plus |
| barc-PC | 556 | CG6049-PC | 1..556 | 1..556 | 2989 | 100 | Plus |
