Clone Sequence Records
BS10109.3prime Sequence
732 bp (731 high quality bases) assembled on 2006-04-19
> BS10109.3prime
ATGGTCTAGAAAGCTTTTAATTCAAGTTAACTGATACTCCCTGCTTCTGC
TGCTCCTTGAGTTCCTGGACGACAAAGTTGCGGAATTCCTCGTAGGCCAC
ATCGATGTCCACGTTATTGATGATCTTGTGGAAGTTGCCGGGCGTCAAAC
CATAATCGAGCTCCACCTGAGCGGCATTGAGGCGCTTGCTCAGCGACTCC
TCCGTTTCGGAGCCACGTTTGCGAAGTCGTCGCTCCAGCTCCTTGATGCT
CGGTGGATTGTTGAATATCAGTATGGGATTGAGATCCGTACGCTTGATCT
GCTCCACTCCCTTCTGTTCGATGTCCAGTATGCAGACCCGTCCCTGTGCC
TGGATCTCTCTAACCGCCGCCTTGCTCGTTCCATAAAGATTGCCCGTAAA
CTCGGCCGTCTCGATGAACTCGTCGCCAGCGATGGCTGCCTCCATTTCCG
GACGTTCCACAAAATAGTAGTGCACGCCATGCTCCTCGCCCTCACGCGGC
TTCCGCGTGGTGTGCGATATGCTGAAGCCAAAGGTGCTGGGGAATTCGGC
GAATAGCCTTTTCAGCAGCGTACTCTTTCCGGATCCCGAGGGACCGCATA
GGACAAGGGGGCGTGGCCCGGGGGCGGTCATCTTCTTGCTCGTTAAGGAT
GCCGCTGCACTGCTACTGCTGCTGCTGCTGCTGAGCGCCCGATTTACAAT
GAACAGAAAGCTTATCATGTCGACTGATAACT
BS10109.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-PA | 702 | CG11811-RA | 1..702 | 718..17 | 3510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-RA | 1575 | CG11811-RA | 153..854 | 718..17 | 3510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10691176..10691877 | 718..17 | 3510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:53:54 has no hits.
BS10109.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:33 Download gff for
BS10109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-PA | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:55 Download gff for
BS10109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-PA | 1..702 | 17..718 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:36:36 Download gff for
BS10109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 149..857 | 13..722 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:39 Download gff for
BS10109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 149..857 | 13..722 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:39 Download gff for
BS10109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10691172..10691880 | 13..722 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:36:36 Download gff for
BS10109.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10684272..10684980 | 13..722 | 99 | | Minus |
BS10109.5prime Sequence
732 bp (731 high quality bases) assembled on 2006-04-19
> BS10109.5prime
GAAGTTATCAGTCGACATGATAAGCTTTCTGTTCATTGTAAATCGGGCGC
TCAGCAGCAGCAGCAGCAGTAGCAGTGCAGCGGCATCCTTAACGAGCAAG
AAGATGACCGCCCCCGGGCCACGCCCCCTTGTCCTATGCGGTCCCTCGGG
ATCCGGAAAGAGTACGCTGCTGAAAAGGCTATTCGCCGAATTCCCCAGCA
CCTTTGGCTTCAGCATATCGCACACCACGCGGAAGCCGCGTGAGGGCGAG
GAGCATGGCGTGCACTACTATTTTGTGGAACGTCCGGAAATGGAGGCAGC
CATCGCTGGCGACGAGTTCATCGAGACGGCCGAGTTTACGGGCAATCTTT
ATGGAACGAGCAAGGCGGCGGTTAGAGAGATCCAGGCACAGGGACGGGTC
TGCATACTGGACATCGAACAGAAGGGAGTGGAGCAGATCAAGCGTACGGA
TCTCAATCCCATACTGATATTCAACAATCCACCGAGCATCAAGGAGCTGG
AGCGACGACTTCGCAAACGTGGCTCCGAAACGGAGGAGTCGCTGAGCAAG
CGCCTCAATGCCGCTCAGGTGGAGCTCGATTATGGTTTGACGCCCGGCAA
CTTCCACAAGATCATCAATAACGTGGACATCGATGTGGCCTACGAGGAAT
TCCGCAACTTTGTCGTCCAGGAACTCAAGGAGCAGCAGAAGCAGGGAGTA
TCAGTTAACTTGAATTAAAAGCTTTCTAGACC
BS10109.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-PA | 702 | CG11811-RA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-RA | 1575 | CG11811-RA | 153..854 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10691176..10691877 | 17..718 | 3510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:23:25 has no hits.
BS10109.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:34 Download gff for
BS10109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:46:57 Download gff for
BS10109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:43:16 Download gff for
BS10109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 149..857 | 13..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:01:07 Download gff for
BS10109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 149..857 | 13..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:01:07 Download gff for
BS10109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10691172..10691880 | 13..722 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:43:16 Download gff for
BS10109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10684272..10684980 | 13..722 | 99 | | Plus |
BS10109.complete Sequence
734 bp (734 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636562
> BS10109.complete
GAAGTTATCAGTCGACATGATAAGCTTTCTGTTCATTGTAAATCGGGCGC
TCAGCAGCAGCAGCAGCAGTAGCAGTGCAGCGGCATCCTTAACGAGCAAG
AAGATGACCGCCCCCGGGCCACGCCCCCTTGTCCTATGCGGTCCCTCGGG
ATCCGGAAAGAGTACGCTGCTGAAAAGGCTATTCGCCGAATTCCCCAGCA
CCTTTGGCTTCAGCATATCGCACACCACGCGGAAGCCGCGTGAGGGCGAG
GAGCATGGCGTGCACTACTATTTTGTGGAACGTCCGGAAATGGAGGCAGC
CATCGCTGGCGACGAGTTCATCGAGACGGCCGAGTTTACGGGCAATCTTT
ATGGAACGAGCAAGGCGGCGGTTAGAGAGATCCAGGCACAGGGACGGGTC
TGCATACTGGACATCGAACAGAAGGGAGTGGAGCAGATCAAGCGTACGGA
TCTCAATCCCATACTGATATTCAACAATCCACCGAGCATCAAGGAGCTGG
AGCGACGACTTCGCAAACGTGGCTCCGAAACGGAGGAGTCGCTGAGCAAG
CGCCTCAATGCCGCTCAGGTGGAGCTCGATTATGGTTTGACGCCCGGCAA
CTTCCACAAGATCATCAATAACGTGGACATCGATGTGGCCTACGAGGAAT
TCCGCAACTTTGTCGTCCAGGAACTCAAGGAGCAGCAGAAGCAGGGAGTA
TCAGTTAACTTGAATTAAAAGCTTTCTAGACCAT
BS10109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-RA | 702 | CG11811-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-RA | 1575 | CG11811-RA | 153..854 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10691176..10691877 | 17..718 | 3510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:10:35 has no hits.
BS10109.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:10 Download gff for
BS10109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:46 Download gff for
BS10109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 156..864 | 13..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:03:28 Download gff for
BS10109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 153..852 | 17..716 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:10 Download gff for
BS10109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 156..864 | 13..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:32 Download gff for
BS10109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11811-RA | 153..852 | 17..716 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:32 Download gff for
BS10109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10691176..10691875 | 17..716 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:03:28 Download gff for
BS10109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10684276..10684975 | 17..716 | 100 | | Plus |
BS10109.pep Sequence
Translation from 16 to 717
> BS10109.pep
MISFLFIVNRALSSSSSSSSAAASLTSKKMTAPGPRPLVLCGPSGSGKST
LLKRLFAEFPSTFGFSISHTTRKPREGEEHGVHYYFVERPEMEAAIAGDE
FIETAEFTGNLYGTSKAAVREIQAQGRVCILDIEQKGVEQIKRTDLNPIL
IFNNPPSIKELERRLRKRGSETEESLSKRLNAAQVELDYGLTPGNFHKII
NNVDIDVAYEEFRNFVVQELKEQQKQGVSVNLN*
BS10109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11811-PA | 233 | CG11811-PA | 1..233 | 1..233 | 1176 | 100 | Plus |
| sdt-PF | 859 | CG32717-PF | 659..832 | 36..211 | 262 | 33.7 | Plus |
| sdt-PK | 879 | CG32717-PK | 679..852 | 36..211 | 262 | 33.7 | Plus |
| sdt-PD | 879 | CG32717-PD | 679..852 | 36..211 | 262 | 33.7 | Plus |
| sdt-PH | 934 | CG32717-PH | 734..907 | 36..211 | 262 | 33.7 | Plus |
