Clone BS10112 Report

Search the DGRC for BS10112

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptbeat-Vb-RA
Protein status:BS10112.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10112.3prime Sequence

681 bp (653 high quality bases) assembled on 2006-04-19

> BS10112.3prime
ATGGTCTAGAAAGCTTTTACGTCGCCGCCATTTTATAGCGCGCCGACTTC
CGTGCGCCATATTGAAATGTCAGCGGTGTGAAGAGTCGCACTGCGGTCAT
CGTCATCGAAATAGCCACCAGCAGCAGATGCTGCACTTGTGAATTTGGAG
TGGCACCCGATCTCGAGTTGATCAGCTTCTGATTTTTCTGATCGATATCG
TCCCTGAAGAGCTGGGCGAACATAGTGCCTTCTCTTTGCAGATGAGGATA
CCGATCGATCTCCGCAACACAACGCAGCTCGAGCCCAAGTCTTGCTGGTG
AAATTGTCCGCTTTTGCTGGATCAGTTTTTGCAATTGCAATTGATGGAAA
CGTGGTTCATTGGCGTAGAAATTGAGCTGGGAAACAATGCGTCGCATGCT
GTATCCATGGGCTACTATGGTGGTCTCAAAAGAGGGTAGTAGATCCACCA
GAGAAACCTTTATCCCATTGACGTACCAGGTAATCCGTGTGAAAAGGCTG
GAGAAATCTGTACTACAGTTGACCTCTACGAAGTCATTAAAGCGATAAGT
TGAGTGAAAGCTGCTGATGAGTGGATTGTTTTGGGGAAGTGCTTCGACGG
TCATGTTGGCATCGCGTGCAGTTAGCTGGAAGTGGGGAGCGTCACCGGAC
ACTTCGCACCTGTAGACGCCCGACGACTTGA

BS10112.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31298-PA 987 beat-Vb-RA 323..987 681..17 3325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Vb-RB 1631 CG31298-RB 688..1352 681..17 3325 100 Minus
beat-Vb-RA 1826 CG31298-RA 883..1547 681..17 3325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12933532..12933836 459..155 1525 100 Minus
3R 32079331 3R 12934394..12934534 157..17 705 100 Minus
3R 32079331 3R 12933339..12933476 593..456 690 100 Minus
3R 32079331 3R 12931695..12931784 681..592 450 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:14:53 has no hits.

BS10112.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:39 Download gff for BS10112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31298-PA 324..987 17..680 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:03 Download gff for BS10112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31298-PA 324..987 17..680 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:23 Download gff for BS10112.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 884..1557 9..680 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:54:26 Download gff for BS10112.3prime
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 884..1557 9..680 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:54:26 Download gff for BS10112.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12931696..12931784 592..680 100 -> Minus
3R 12933341..12933474 458..591 100 -> Minus
3R 12933534..12933834 157..457 100 -> Minus
3R 12934395..12934544 9..156 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:23 Download gff for BS10112.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8757418..8757506 592..680 100 -> Minus
arm_3R 8759063..8759196 458..591 100 -> Minus
arm_3R 8759256..8759556 157..457 100 -> Minus
arm_3R 8760117..8760266 9..156 97   Minus

BS10112.5prime Sequence

921 bp (818 high quality bases) assembled on 2006-04-19

> BS10112.5prime
GAAGTTATCAGTCGACATGGACCTGGGCCGCTGGCTGCTGCAGCTGGGCG
TGCACATGCTGCTGGTTGTGCGGCGCATTCAGTGTCTACGTGTGACTGAC
ATCAATGTGCCACAAATTGTTGATTTTCGTGATAACGTGACATTATCCTG
CAGCTATGACATAAGTGGTCACACGTTAAATTCGGTTAAGTGGTACAAAA
ACGGAAAGGAGTTTTTTAGATACTCGCCCCTCACCCCGCCCACCTACATT
CCGTTCGCCGTTGAGGGCGTGCAGCTGATCGATGACGGCAACGAGTGCAA
CGAATCCTCCTGTCGCGTGGAGCTCAATTTATTGGGCGTCAAGTCGTCGG
GCGTCTACAGGTGCGAAGTGTCCGGTGACGCTCCCCACTTCCAGCTAACT
GCACGCGATGCCAACATGACCGTCGAAGCACTTCCCCAAAACAATCCACT
CATCAGCAGCTTTCACTCAACTTATCGCTTTAATGACTTCGTAGAGGTCA
ACTGTAGTACAGATTTCTCCAGCCTTTTCACACGGATTACCTGGTACGTC
AATGGGATAAAGGTTTCTCTGGTGGATCTACTACCCTCTTTTGAGACCAC
CATAGTAGCCCATGGATACAGCATGCGACGCATTGTTTCCCAGCTCAATT
TCTACGCCAATGAACCACGTTTCCATCAATTGCAATTGCAAAAACTGATC
CAGCAAAAGCGGACAATTTCACCAGCAAGACTTGGGCTCGAGCTGCGTTG
TGTTGCGGAGATCGATCGGTATCCTCATCTGCAAAGAGAAGGCACTATGT
TCGCCCAGCTCTTCAGGGACGATATCGATCAAAAAAATCAGAAGCTGATC
AACTCGAGATCGGGTGCCACTCCAATTCACAAGTGCAGCATCTGCTGCTG
GTGGCTATTTCGATGACGATG

BS10112.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31298-PA 987 beat-Vb-RA 1..859 17..875 4270 99.8 Plus
CG31298-PA 987 beat-Vb-RA 859..906 874..921 240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Vb-RB 1631 CG31298-RB 366..1271 17..921 4490 99.8 Plus
beat-Vb-RA 1826 CG31298-RA 561..1466 17..921 4490 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12933532..12933836 561..865 1510 99.7 Plus
3R 32079331 3R 12931574..12931784 218..428 1055 100 Plus
3R 32079331 3R 12928864..12929018 65..219 775 100 Plus
3R 32079331 3R 12933339..12933476 427..564 690 100 Plus
3R 32079331 3R 12934394..12934453 863..921 250 98.3 Plus
3R 32079331 3R 12918721..12918769 17..65 245 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:11:01 has no hits.

BS10112.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:41 Download gff for BS10112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31298-PA 1..906 17..921 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:04 Download gff for BS10112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31298-PA 1..906 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:26:52 Download gff for BS10112.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1466 17..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:50:03 Download gff for BS10112.5prime
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1466 17..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:50:03 Download gff for BS10112.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12933534..12933834 563..863 99 -> Plus
3R 12934395..12934453 864..921 98   Plus
3R 12918721..12918769 17..65 100 -> Plus
3R 12928865..12929018 66..219 100 -> Plus
3R 12931576..12931784 220..428 100 -> Plus
3R 12933341..12933474 429..562 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:26:52 Download gff for BS10112.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8744443..8744491 17..65 100 -> Plus
arm_3R 8754587..8754740 66..219 100 -> Plus
arm_3R 8757298..8757506 220..428 100 -> Plus
arm_3R 8759063..8759196 429..562 100 -> Plus
arm_3R 8759256..8759556 563..863 99 -> Plus
arm_3R 8760117..8760175 864..921 98   Plus

BS10112.complete Sequence

1019 bp (1019 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636563

> BS10112.complete
GAAGTTATCAGTCGACATGGACCTGGGCCGCTGGCTGCTGCAGCTGGGCG
TGCACATGCTGCTGGTTGTGCGGCGCATTCAGTGTCTACGTGTGACTGAC
ATCAATGTGCCACAAATTGTTGATTTTCGTGATAACGTGACATTATCCTG
CAGCTATGACATAAGTGGTCACACGTTAAATTCGGTTAAGTGGTACAAAA
ACGGAAAGGAGTTTTTTAGATACTCGCCCCTCACCCCGCCCACCTACATT
CCGTTCGCCGTTGAGGGCGTGCAGCTGATCGATGACGGCAACGAGTGCAA
CGAATCCTCCTGTCGCGTGGAGCTCAATTTATTGGGCGTCAAGTCGTCGG
GCGTCTACAGGTGCGAAGTGTCCGGTGACGCTCCCCACTTCCAGCTAACT
GCACGCGATGCCAACATGACCGTCGAAGCACTTCCCCAAAACAATCCACT
CATCAGCAGCTTTCACTCAACTTATCGCTTTAATGACTTCGTAGAGGTCA
ACTGTAGTACAGATTTCTCCAGCCTTTTCACACGGATTACCTGGTACGTC
AATGGGATAAAGGTTTCTCTGGTGGATCTACTACCCTCTTTTGAGACCAC
CATAGTAGCCCATGGATACAGCATGCGACGCATTGTTTCCCAGCTCAATT
TCTACGCCAATGAACCACGTTTCCATCAATTGCAATTGCAAAAACTGATC
CAGCAAAAGCGGACAATTTCACCAGCAAGACTTGGGCTCGAGCTGCGTTG
TGTTGCGGAGATCGATCGGTATCCTCATCTGCAAAGAGAAGGCACTATGT
TCGCCCAGCTCTTCAGGGACGATATCGATCAGAAAAATCAGAAGCTGATC
AACTCGAGATCGGGTGCCACTCCAAATTCACAAGTGCAGCATCTGCTGCT
GGTGGCTATTTCGATGACGATGACCGCAGTGCGACTCTTCACACCGCTGA
CATTTCAATATGGCGCACGGAAGTCGGCGCGCTATAAAATGGCGGCGACG
TAAAAGCTTTCTAGACCAT

BS10112.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Vb-RB 987 CG31298-PB 1..987 17..1003 4935 100 Plus
beat-Vb-RA 987 CG31298-PA 1..987 17..1003 4935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Vb-RB 1631 CG31298-RB 366..1352 17..1003 4935 100 Plus
beat-Vb-RA 1826 CG31298-RA 561..1547 17..1003 4935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12933532..12933836 561..865 1525 100 Plus
3R 32079331 3R 12931574..12931784 218..428 1055 100 Plus
3R 32079331 3R 12928864..12929018 65..219 775 100 Plus
3R 32079331 3R 12934394..12934534 863..1003 705 100 Plus
3R 32079331 3R 12933339..12933476 427..564 690 100 Plus
3R 32079331 3R 12918721..12918769 17..65 245 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:55:34 has no hits.

BS10112.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:11 Download gff for BS10112.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 1..987 17..1003 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:53 Download gff for BS10112.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1545 17..1001 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:53 Download gff for BS10112.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1545 17..1001 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:11 Download gff for BS10112.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1557 17..1011 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:07:04 Download gff for BS10112.complete
Subject Subject Range Query Range Percent Splice Strand
beat-Vb-RA 561..1545 17..1001 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:07:04 Download gff for BS10112.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12933534..12933834 563..863 100 -> Plus
3R 12934395..12934532 864..1001 100   Plus
3R 12931576..12931784 220..428 100 -> Plus
3R 12933341..12933474 429..562 100 -> Plus
3R 12918721..12918769 17..65 100 -> Plus
3R 12928865..12929018 66..219 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:53 Download gff for BS10112.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8744443..8744491 17..65 100 -> Plus
arm_3R 8754587..8754740 66..219 100 -> Plus
arm_3R 8757298..8757506 220..428 100 -> Plus
arm_3R 8759063..8759196 429..562 100 -> Plus
arm_3R 8759256..8759556 563..863 100 -> Plus
arm_3R 8760117..8760254 864..1001 100   Plus

BS10112.pep Sequence

Translation from 16 to 1002

> BS10112.pep
MDLGRWLLQLGVHMLLVVRRIQCLRVTDINVPQIVDFRDNVTLSCSYDIS
GHTLNSVKWYKNGKEFFRYSPLTPPTYIPFAVEGVQLIDDGNECNESSCR
VELNLLGVKSSGVYRCEVSGDAPHFQLTARDANMTVEALPQNNPLISSFH
STYRFNDFVEVNCSTDFSSLFTRITWYVNGIKVSLVDLLPSFETTIVAHG
YSMRRIVSQLNFYANEPRFHQLQLQKLIQQKRTISPARLGLELRCVAEID
RYPHLQREGTMFAQLFRDDIDQKNQKLINSRSGATPNSQVQHLLLVAISM
TMTAVRLFTPLTFQYGARKSARYKMAAT*

BS10112.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
beat-Vb-PB 328 CG31298-PB 1..328 1..328 1706 100 Plus
beat-Vb-PA 328 CG31298-PA 1..328 1..328 1706 100 Plus
beat-Va-PC 300 CG10134-PC 1..274 1..288 711 50.7 Plus
beat-Va-PA 300 CG10134-PA 1..274 1..288 711 50.7 Plus
beat-Va-PB 300 CG10134-PB 1..274 1..288 711 50.7 Plus