Clone Sequence Records
BS10112.3prime Sequence
681 bp (653 high quality bases) assembled on 2006-04-19
> BS10112.3prime
ATGGTCTAGAAAGCTTTTACGTCGCCGCCATTTTATAGCGCGCCGACTTC
CGTGCGCCATATTGAAATGTCAGCGGTGTGAAGAGTCGCACTGCGGTCAT
CGTCATCGAAATAGCCACCAGCAGCAGATGCTGCACTTGTGAATTTGGAG
TGGCACCCGATCTCGAGTTGATCAGCTTCTGATTTTTCTGATCGATATCG
TCCCTGAAGAGCTGGGCGAACATAGTGCCTTCTCTTTGCAGATGAGGATA
CCGATCGATCTCCGCAACACAACGCAGCTCGAGCCCAAGTCTTGCTGGTG
AAATTGTCCGCTTTTGCTGGATCAGTTTTTGCAATTGCAATTGATGGAAA
CGTGGTTCATTGGCGTAGAAATTGAGCTGGGAAACAATGCGTCGCATGCT
GTATCCATGGGCTACTATGGTGGTCTCAAAAGAGGGTAGTAGATCCACCA
GAGAAACCTTTATCCCATTGACGTACCAGGTAATCCGTGTGAAAAGGCTG
GAGAAATCTGTACTACAGTTGACCTCTACGAAGTCATTAAAGCGATAAGT
TGAGTGAAAGCTGCTGATGAGTGGATTGTTTTGGGGAAGTGCTTCGACGG
TCATGTTGGCATCGCGTGCAGTTAGCTGGAAGTGGGGAGCGTCACCGGAC
ACTTCGCACCTGTAGACGCCCGACGACTTGA
BS10112.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31298-PA | 987 | beat-Vb-RA | 323..987 | 681..17 | 3325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-Vb-RB | 1631 | CG31298-RB | 688..1352 | 681..17 | 3325 | 100 | Minus |
beat-Vb-RA | 1826 | CG31298-RA | 883..1547 | 681..17 | 3325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12933532..12933836 | 459..155 | 1525 | 100 | Minus |
3R | 32079331 | 3R | 12934394..12934534 | 157..17 | 705 | 100 | Minus |
3R | 32079331 | 3R | 12933339..12933476 | 593..456 | 690 | 100 | Minus |
3R | 32079331 | 3R | 12931695..12931784 | 681..592 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:14:53 has no hits.
BS10112.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:39 Download gff for
BS10112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31298-PA | 324..987 | 17..680 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:03 Download gff for
BS10112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31298-PA | 324..987 | 17..680 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:58:23 Download gff for
BS10112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 884..1557 | 9..680 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:54:26 Download gff for
BS10112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 884..1557 | 9..680 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:54:26 Download gff for
BS10112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12931696..12931784 | 592..680 | 100 | -> | Minus |
3R | 12933341..12933474 | 458..591 | 100 | -> | Minus |
3R | 12933534..12933834 | 157..457 | 100 | -> | Minus |
3R | 12934395..12934544 | 9..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:58:23 Download gff for
BS10112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8757418..8757506 | 592..680 | 100 | -> | Minus |
arm_3R | 8759063..8759196 | 458..591 | 100 | -> | Minus |
arm_3R | 8759256..8759556 | 157..457 | 100 | -> | Minus |
arm_3R | 8760117..8760266 | 9..156 | 97 | | Minus |
BS10112.5prime Sequence
921 bp (818 high quality bases) assembled on 2006-04-19
> BS10112.5prime
GAAGTTATCAGTCGACATGGACCTGGGCCGCTGGCTGCTGCAGCTGGGCG
TGCACATGCTGCTGGTTGTGCGGCGCATTCAGTGTCTACGTGTGACTGAC
ATCAATGTGCCACAAATTGTTGATTTTCGTGATAACGTGACATTATCCTG
CAGCTATGACATAAGTGGTCACACGTTAAATTCGGTTAAGTGGTACAAAA
ACGGAAAGGAGTTTTTTAGATACTCGCCCCTCACCCCGCCCACCTACATT
CCGTTCGCCGTTGAGGGCGTGCAGCTGATCGATGACGGCAACGAGTGCAA
CGAATCCTCCTGTCGCGTGGAGCTCAATTTATTGGGCGTCAAGTCGTCGG
GCGTCTACAGGTGCGAAGTGTCCGGTGACGCTCCCCACTTCCAGCTAACT
GCACGCGATGCCAACATGACCGTCGAAGCACTTCCCCAAAACAATCCACT
CATCAGCAGCTTTCACTCAACTTATCGCTTTAATGACTTCGTAGAGGTCA
ACTGTAGTACAGATTTCTCCAGCCTTTTCACACGGATTACCTGGTACGTC
AATGGGATAAAGGTTTCTCTGGTGGATCTACTACCCTCTTTTGAGACCAC
CATAGTAGCCCATGGATACAGCATGCGACGCATTGTTTCCCAGCTCAATT
TCTACGCCAATGAACCACGTTTCCATCAATTGCAATTGCAAAAACTGATC
CAGCAAAAGCGGACAATTTCACCAGCAAGACTTGGGCTCGAGCTGCGTTG
TGTTGCGGAGATCGATCGGTATCCTCATCTGCAAAGAGAAGGCACTATGT
TCGCCCAGCTCTTCAGGGACGATATCGATCAAAAAAATCAGAAGCTGATC
AACTCGAGATCGGGTGCCACTCCAATTCACAAGTGCAGCATCTGCTGCTG
GTGGCTATTTCGATGACGATG
BS10112.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31298-PA | 987 | beat-Vb-RA | 1..859 | 17..875 | 4270 | 99.8 | Plus |
CG31298-PA | 987 | beat-Vb-RA | 859..906 | 874..921 | 240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-Vb-RB | 1631 | CG31298-RB | 366..1271 | 17..921 | 4490 | 99.8 | Plus |
beat-Vb-RA | 1826 | CG31298-RA | 561..1466 | 17..921 | 4490 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12933532..12933836 | 561..865 | 1510 | 99.7 | Plus |
3R | 32079331 | 3R | 12931574..12931784 | 218..428 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 12928864..12929018 | 65..219 | 775 | 100 | Plus |
3R | 32079331 | 3R | 12933339..12933476 | 427..564 | 690 | 100 | Plus |
3R | 32079331 | 3R | 12934394..12934453 | 863..921 | 250 | 98.3 | Plus |
3R | 32079331 | 3R | 12918721..12918769 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:11:01 has no hits.
BS10112.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:41 Download gff for
BS10112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31298-PA | 1..906 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:04 Download gff for
BS10112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31298-PA | 1..906 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:26:52 Download gff for
BS10112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1466 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:50:03 Download gff for
BS10112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1466 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:50:03 Download gff for
BS10112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12933534..12933834 | 563..863 | 99 | -> | Plus |
3R | 12934395..12934453 | 864..921 | 98 | | Plus |
3R | 12918721..12918769 | 17..65 | 100 | -> | Plus |
3R | 12928865..12929018 | 66..219 | 100 | -> | Plus |
3R | 12931576..12931784 | 220..428 | 100 | -> | Plus |
3R | 12933341..12933474 | 429..562 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:26:52 Download gff for
BS10112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8744443..8744491 | 17..65 | 100 | -> | Plus |
arm_3R | 8754587..8754740 | 66..219 | 100 | -> | Plus |
arm_3R | 8757298..8757506 | 220..428 | 100 | -> | Plus |
arm_3R | 8759063..8759196 | 429..562 | 100 | -> | Plus |
arm_3R | 8759256..8759556 | 563..863 | 99 | -> | Plus |
arm_3R | 8760117..8760175 | 864..921 | 98 | | Plus |
BS10112.complete Sequence
1019 bp (1019 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636563
> BS10112.complete
GAAGTTATCAGTCGACATGGACCTGGGCCGCTGGCTGCTGCAGCTGGGCG
TGCACATGCTGCTGGTTGTGCGGCGCATTCAGTGTCTACGTGTGACTGAC
ATCAATGTGCCACAAATTGTTGATTTTCGTGATAACGTGACATTATCCTG
CAGCTATGACATAAGTGGTCACACGTTAAATTCGGTTAAGTGGTACAAAA
ACGGAAAGGAGTTTTTTAGATACTCGCCCCTCACCCCGCCCACCTACATT
CCGTTCGCCGTTGAGGGCGTGCAGCTGATCGATGACGGCAACGAGTGCAA
CGAATCCTCCTGTCGCGTGGAGCTCAATTTATTGGGCGTCAAGTCGTCGG
GCGTCTACAGGTGCGAAGTGTCCGGTGACGCTCCCCACTTCCAGCTAACT
GCACGCGATGCCAACATGACCGTCGAAGCACTTCCCCAAAACAATCCACT
CATCAGCAGCTTTCACTCAACTTATCGCTTTAATGACTTCGTAGAGGTCA
ACTGTAGTACAGATTTCTCCAGCCTTTTCACACGGATTACCTGGTACGTC
AATGGGATAAAGGTTTCTCTGGTGGATCTACTACCCTCTTTTGAGACCAC
CATAGTAGCCCATGGATACAGCATGCGACGCATTGTTTCCCAGCTCAATT
TCTACGCCAATGAACCACGTTTCCATCAATTGCAATTGCAAAAACTGATC
CAGCAAAAGCGGACAATTTCACCAGCAAGACTTGGGCTCGAGCTGCGTTG
TGTTGCGGAGATCGATCGGTATCCTCATCTGCAAAGAGAAGGCACTATGT
TCGCCCAGCTCTTCAGGGACGATATCGATCAGAAAAATCAGAAGCTGATC
AACTCGAGATCGGGTGCCACTCCAAATTCACAAGTGCAGCATCTGCTGCT
GGTGGCTATTTCGATGACGATGACCGCAGTGCGACTCTTCACACCGCTGA
CATTTCAATATGGCGCACGGAAGTCGGCGCGCTATAAAATGGCGGCGACG
TAAAAGCTTTCTAGACCAT
BS10112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-Vb-RB | 987 | CG31298-PB | 1..987 | 17..1003 | 4935 | 100 | Plus |
beat-Vb-RA | 987 | CG31298-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-Vb-RB | 1631 | CG31298-RB | 366..1352 | 17..1003 | 4935 | 100 | Plus |
beat-Vb-RA | 1826 | CG31298-RA | 561..1547 | 17..1003 | 4935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12933532..12933836 | 561..865 | 1525 | 100 | Plus |
3R | 32079331 | 3R | 12931574..12931784 | 218..428 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 12928864..12929018 | 65..219 | 775 | 100 | Plus |
3R | 32079331 | 3R | 12934394..12934534 | 863..1003 | 705 | 100 | Plus |
3R | 32079331 | 3R | 12933339..12933476 | 427..564 | 690 | 100 | Plus |
3R | 32079331 | 3R | 12918721..12918769 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:55:34 has no hits.
BS10112.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:11 Download gff for
BS10112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 1..987 | 17..1003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:53 Download gff for
BS10112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1545 | 17..1001 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:53 Download gff for
BS10112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1545 | 17..1001 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:11 Download gff for
BS10112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1557 | 17..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:07:04 Download gff for
BS10112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
beat-Vb-RA | 561..1545 | 17..1001 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:07:04 Download gff for
BS10112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12933534..12933834 | 563..863 | 100 | -> | Plus |
3R | 12934395..12934532 | 864..1001 | 100 | | Plus |
3R | 12931576..12931784 | 220..428 | 100 | -> | Plus |
3R | 12933341..12933474 | 429..562 | 100 | -> | Plus |
3R | 12918721..12918769 | 17..65 | 100 | -> | Plus |
3R | 12928865..12929018 | 66..219 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:53 Download gff for
BS10112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8744443..8744491 | 17..65 | 100 | -> | Plus |
arm_3R | 8754587..8754740 | 66..219 | 100 | -> | Plus |
arm_3R | 8757298..8757506 | 220..428 | 100 | -> | Plus |
arm_3R | 8759063..8759196 | 429..562 | 100 | -> | Plus |
arm_3R | 8759256..8759556 | 563..863 | 100 | -> | Plus |
arm_3R | 8760117..8760254 | 864..1001 | 100 | | Plus |
BS10112.pep Sequence
Translation from 16 to 1002
> BS10112.pep
MDLGRWLLQLGVHMLLVVRRIQCLRVTDINVPQIVDFRDNVTLSCSYDIS
GHTLNSVKWYKNGKEFFRYSPLTPPTYIPFAVEGVQLIDDGNECNESSCR
VELNLLGVKSSGVYRCEVSGDAPHFQLTARDANMTVEALPQNNPLISSFH
STYRFNDFVEVNCSTDFSSLFTRITWYVNGIKVSLVDLLPSFETTIVAHG
YSMRRIVSQLNFYANEPRFHQLQLQKLIQQKRTISPARLGLELRCVAEID
RYPHLQREGTMFAQLFRDDIDQKNQKLINSRSGATPNSQVQHLLLVAISM
TMTAVRLFTPLTFQYGARKSARYKMAAT*
BS10112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
beat-Vb-PB | 328 | CG31298-PB | 1..328 | 1..328 | 1706 | 100 | Plus |
beat-Vb-PA | 328 | CG31298-PA | 1..328 | 1..328 | 1706 | 100 | Plus |
beat-Va-PC | 300 | CG10134-PC | 1..274 | 1..288 | 711 | 50.7 | Plus |
beat-Va-PA | 300 | CG10134-PA | 1..274 | 1..288 | 711 | 50.7 | Plus |
beat-Va-PB | 300 | CG10134-PB | 1..274 | 1..288 | 711 | 50.7 | Plus |