Clone Sequence Records
BS10114.3prime Sequence
924 bp (873 high quality bases) assembled on 2006-04-19
> BS10114.3prime
ATGGTCTAGAAAGCTTTTATTCGTACTTCGAGATAAAGTCAAAGCGCAAC
ACGGAGGCCGGGAAAATTTCACCAGCTTTCGCCAATGGTCGATCAGAAGT
ACGTGCAGGAAGGTTTATTAAAACATCGGCACCAACAATGCTCTGCAAGC
GACTACTAATTTGATTTCCATTGACGCTCGCGTATAACTCTCCAGACTTC
GAAATCACGGAGGCCCGAACGAACTCCGGGCGGCTATCTAAGCTGAAGTC
ATTAAGCAACTTAACGTTAAGCACAGAAAGGGAGCACTTGCAGCGATCCC
AGCCAGCAGCAAAGCGTATTGCGGGCAGCGCGAACAGATGAAAAGTAACG
AATGCTGAAACTGGGTTTCCGGGCAGACCAAAGAAGTACTTATCTTTCCG
ACTGGCAAAAGTCATGGGCTTCCCTGGCTTTATGTTTACTCGGCCGCAGT
GAATCCTAAATTGAAGGTCCTCCAACACGGACTTTACGAAATCCTTATCG
CCCATTGAGACACCACCGCTGCAAATGACAAAGTCCACCACCTCGAAGAG
CTCCAATAGAGATTCCTTAGTCCTCTGAAAGCTATCGCTTAGCACACACG
TATGCATGCAGTTAAAGCCAAAGTAAACCAGAAGCTCGGTCAACATGGTG
GTATTTGAGTCAAAGATCTTTCCCGGAGTAAGCTGATTGCGCGGTGAACA
CAGCTCACTTCCAGTGGACACTATAGCCACCTTAGGCTTCGATAGTATCA
ACCTATTGCCCACGGAAGCCAGCAGCGATTTGACCACCACGGGAGAAGGA
TCTAGAGCAGGAAAAATTCGATCATTGGTGCTTAGATCGTAGCCCACAGG
CCTAACATCTAATCCAGCTTGTGGCTCCACCAAAATGTCAACAAGGCTTT
CCCTGGCCGTTCTTATCTAACTGC
BS10114.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2945-PB | 1806 | cin-RB | 921..1806 | 902..17 | 4430 | 100 | Minus |
| CG2945-PA | 1806 | cin-RA | 921..1806 | 902..17 | 4430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cin-RA | 2110 | CG2945-RA | 1020..1926 | 924..17 | 4515 | 99.9 | Minus |
| cin-RB | 2054 | CG2945-RB | 1020..1926 | 924..17 | 4515 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 256995..257428 | 855..422 | 2170 | 100 | Minus |
| X | 23542271 | X | 257479..257642 | 423..260 | 820 | 100 | Minus |
| X | 23542271 | X | 258142..258285 | 160..17 | 720 | 100 | Minus |
| X | 23542271 | X | 257980..258080 | 261..161 | 505 | 100 | Minus |
| X | 23542271 | X | 256869..256941 | 924..851 | 320 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:07:35 has no hits.
BS10114.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:29:44 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:09 Download gff for
BS10114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2945-PA | 900..1806 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:43:11 Download gff for
BS10114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cin-RB | 1464..2375 | 12..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:18:24 Download gff for
BS10114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cin-RB | 1020..1931 | 12..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:18:24 Download gff for
BS10114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 256869..256940 | 852..924 | 98 | -> | Minus |
| X | 256999..257427 | 423..851 | 100 | -> | Minus |
| X | 257480..257642 | 260..422 | 100 | -> | Minus |
| X | 257982..258080 | 161..259 | 100 | -> | Minus |
| X | 258142..258290 | 12..160 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:43:11 Download gff for
BS10114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 150902..150973 | 852..924 | 98 | -> | Minus |
| arm_X | 151032..151460 | 423..851 | 100 | -> | Minus |
| arm_X | 151513..151675 | 260..422 | 100 | -> | Minus |
| arm_X | 152015..152113 | 161..259 | 100 | -> | Minus |
| arm_X | 152175..152323 | 12..160 | 98 | | Minus |
BS10114.5prime Sequence
899 bp (826 high quality bases) assembled on 2006-04-19
> BS10114.5prime
GAAGTTATCAGTCGACATGGAATCGATTACCTTTGGAGTTTTGACTATTA
GCGACACATGTTGGCAGGAGCCGGAGAAAGATACAAGTGGTCCTATATTG
AGACAACTTATCGGTGAAACCTTTGCTAATACCCAGGTGATTGGAAACAT
AGTTCCGGACGAAAAGGATATCATACAGCAAGAGCTACGTAAATGGATCG
ATCGGGAGGAGCTGAGAGTGATTCTGACTACCGGAGGAACGGGATTTGCA
CCACGGGATGTGACCCCAGAGGCCACGAGGCAGCTACTAGAAAAGGAATG
CCCACAACTCTCCATGTATATTACACTGGAGTCCATCAAACAAACCCAAT
ATGCGGCTCTTTCCCGCGGACTCTGTGGCATTGCAGGAAATACTCTCATC
TTAAACCTTCCTGGTAGCGAAAAGGCCGTAAAAGAGTGTTTCCAGACCAT
TAGTGCACTTTTGCCTCACGCTGTTCACCTTATAGGTGACGATGTGTCCC
TGGTGCGGAAAACACATGCTGAGGTCCAAGGATCCGCCCAAAAGAGCCAC
ATTTGTCCTCACAAAACCGGAACTGGTACAGATTCTGATCGGAATTCACC
CTATCCAATGCTGCCCGTTCAAGAAGTGCTTTCAATTATCTTTAACACGG
TACAAAAGACCGCCAATCTGAACAAAATTCTGTTGGAAATGAACGCGCCG
GTTAACATTCCGCCCTTTAGGGCTTCCATCAAGGATGGCTATGCCATGAA
GTCCACTGGATTTTCTGGCACTAAGCGTGTTTTGGGATGCATAGCCGCCG
GAGATTCACCTAATTCTTTGCCGCTGGCAGAGGATGAGTGCTACAAAATT
AACACAGGGGCACCATTACCCCTGGAGGCAGATTGCGTAGTGCAAGTGG
BS10114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2945-PB | 1806 | cin-RB | 1..883 | 17..899 | 4415 | 100 | Plus |
| CG2945-PA | 1806 | cin-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cin-RA | 2110 | CG2945-RA | 121..1003 | 17..899 | 4415 | 100 | Plus |
| cin-RB | 2054 | CG2945-RB | 121..1003 | 17..899 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 255881..256641 | 48..808 | 3805 | 100 | Plus |
| X | 23542271 | X | 256762..256852 | 809..899 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:10:33 has no hits.
BS10114.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 10:29:45 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:11 Download gff for
BS10114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2945-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:58:55 Download gff for
BS10114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cin-RB | 565..1447 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:34:27 Download gff for
BS10114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cin-RB | 121..1003 | 17..899 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:34:27 Download gff for
BS10114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 255794..255824 | 17..47 | 100 | -> | Plus |
| X | 255881..256641 | 48..808 | 100 | -> | Plus |
| X | 256762..256852 | 809..899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:58:55 Download gff for
BS10114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 149827..149857 | 17..47 | 100 | -> | Plus |
| arm_X | 149914..150674 | 48..808 | 100 | -> | Plus |
| arm_X | 150795..150885 | 809..899 | 100 | | Plus |
BS10114.complete Sequence
1838 bp assembled on 2007-11-30
GenBank Submission: FJ636564
> BS10114.complete
GAAGTTATCAGTCGACATGGAATCGATTACCTTTGGAGTTTTGACTATTA
GCGACACATGTTGGCAGGAGCCGGAGAAAGATACAAGTGGTCCTATATTG
AGACAACTTATCGGTGAAACCTTTGCTAATACCCAGGTGATTGGAAACAT
AGTTCCGGACGAAAAGGATATCATACAGCAAGAGCTACGTAAATGGATCG
ATCGGGAGGAGCTGAGAGTGATTCTGACTACCGGAGGAACGGGATTTGCA
CCACGGGATGTGACCCCAGAGGCCACGAGGCAGCTACTAGAAAAGGAATG
CCCACAACTCTCCATGTATATTACACTGGAGTCCATCAAACAAACCCAAT
ATGCGGCTCTTTCCCGCGGACTCTGTGGCATTGCAGGAAATACTCTCATC
TTAAACCTTCCTGGTAGCGAAAAGGCCGTAAAAGAGTGTTTCCAGACCAT
TAGTGCACTTTTGCCTCACGCTGTTCACCTTATAGGTGACGATGTGTCCC
TGGTGCGGAAAACACATGCTGAGGTCCAAGGATCCGCCCAAAAGAGCCAC
ATTTGTCCTCACAAAACCGGAACTGGTACAGATTCTGATCGGAATTCACC
CTATCCAATGCTGCCCGTTCAAGAAGTGCTTTCAATTATCTTTAACACGG
TACAAAAGACCGCCAATCTGAACAAAATTCTGTTGGAAATGAACGCGCCG
GTTAACATTCCGCCCTTTAGGGCTTCCATCAAGGATGGCTATGCCATGAA
GTCCACTGGATTTTCTGGCACTAAGCGTGTTTTGGGATGCATAGCCGCCG
GAGATTCACCTAATTCTTTGCCGCTGGCAGAGGATGAGTGCTACAAAATT
AACACAGGGGCACCATTACCCCTGGAGGCAGATTGCGTAGTGCAAGTGGA
GGACACCAAGTTGCTGCAGTTAGATAAGAACGGCCAGGAAAGCCTTGTTG
ACATTTTGGTGGAGCCACAAGCTGGATTAGATGTTAGGCCTGTGGGCTAC
GATCTAAGCACCAATGATCGAATTTTTCCTGCTCTAGATCCTTCTCCCGT
GGTGGTCAAATCGCTGCTGGCTTCCGTGGGCAATAGGTTGATACTATCGA
AGCCTAAGGTGGCTATAGTGTCCACTGGAAGTGAGCTGTGTTCACCGCGC
AATCAGCTTACTCCGGGAAAGATCTTTGACTCAAATACCACCATGTTGAC
CGAGCTTCTGGTTTACTTTGGCTTTAACTGCATGCATACGTGTGTGCTAA
GCGATAGCTTTCAGAGGACTAAGGAATCTCTATTGGAGCTCTTCGAGGTG
GTGGACTTTGTCATTTGCAGCGGTGGTGTCTCAATGGGCGATAAGGATTT
CGTAAAGTCCGTGTTGGAGGACCTTCAATTTAGGATTCACTGCGGCCGAG
TAAACATAAAGCCAGGGAAGCCCATGACTTTTGCCAGTCGGAAAGATAAG
TACTTCTTTGGTCTGCCCGGAAACCCAGTTTCAGCATTCGTTACTTTTCA
TCTGTTCGCGCTGCCCGCAATACGCTTTGCTGCTGGCTGGGATCGCTGCA
AGTGCTCCCTTTCTGTGCTTAACGTTAAGTTGCTTAATGACTTCAGCTTA
GATAGCCGCCCGGAGTTCGTTCGGGCCTCCGTGATTTCGAAGTCTGGAGA
GTTATACGCGAGCGTCAATGGAAATCAAATTAGTAGTCGCTTGCAGAGCA
TTGTTGGTGCCGATGTTTTAATAAACCTTCCTGCACGTACTTCTGATCGA
CCATTGGCGAAAGCTGGTGAAATTTTCCCGGCCTCCGTGTTGCGCTTTGA
CTTTATCTCGAAGTACGAATAAAAGCTTTCTAGACCAT
BS10114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cin-RA | 1806 | CG2945-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| cin-RB | 1806 | CG2945-PB | 1..1806 | 17..1822 | 9030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cin-RA | 2110 | CG2945-RA | 121..1926 | 17..1822 | 9030 | 100 | Plus |
| cin-RB | 2054 | CG2945-RB | 121..1926 | 17..1822 | 9030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 255881..256641 | 48..808 | 3805 | 100 | Plus |
| X | 23542271 | X | 256995..257428 | 984..1417 | 2170 | 100 | Plus |
| X | 23542271 | X | 256762..256941 | 809..988 | 900 | 100 | Plus |
| X | 23542271 | X | 257479..257642 | 1416..1579 | 820 | 100 | Plus |
| X | 23542271 | X | 258142..258285 | 1679..1822 | 720 | 100 | Plus |
| X | 23542271 | X | 257980..258080 | 1578..1678 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:36:07 has no hits.
BS10114.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:11:00 Download gff for
BS10114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cin-RA | 1..1806 | 17..1822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:41:13 Download gff for
BS10114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42376-RC | 531..2341 | 17..1827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:21 Download gff for
BS10114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cin-RB | 565..2368 | 17..1820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:39 Download gff for
BS10114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cin-RA | 146..1949 | 17..1820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:18 Download gff for
BS10114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cin-RB | 121..1924 | 17..1820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:18 Download gff for
BS10114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 255794..255824 | 17..47 | 100 | -> | Plus |
| X | 255881..256641 | 48..808 | 100 | -> | Plus |
| X | 256762..256940 | 809..987 | 100 | -> | Plus |
| X | 256999..257427 | 988..1416 | 100 | -> | Plus |
| X | 257480..257642 | 1417..1579 | 100 | -> | Plus |
| X | 257982..258080 | 1580..1678 | 100 | -> | Plus |
| X | 258142..258283 | 1679..1820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:21 Download gff for
BS10114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 149827..149857 | 17..47 | 100 | -> | Plus |
| arm_X | 149914..150674 | 48..808 | 100 | -> | Plus |
| arm_X | 150795..150973 | 809..987 | 100 | -> | Plus |
| arm_X | 151032..151460 | 988..1416 | 100 | -> | Plus |
| arm_X | 151513..151675 | 1417..1579 | 100 | -> | Plus |
| arm_X | 152015..152113 | 1580..1678 | 100 | -> | Plus |
| arm_X | 152175..152316 | 1679..1820 | 100 | | Plus |
BS10114.pep Sequence
Translation from 16 to 1821
> BS10114.pep
MESITFGVLTISDTCWQEPEKDTSGPILRQLIGETFANTQVIGNIVPDEK
DIIQQELRKWIDREELRVILTTGGTGFAPRDVTPEATRQLLEKECPQLSM
YITLESIKQTQYAALSRGLCGIAGNTLILNLPGSEKAVKECFQTISALLP
HAVHLIGDDVSLVRKTHAEVQGSAQKSHICPHKTGTGTDSDRNSPYPMLP
VQEVLSIIFNTVQKTANLNKILLEMNAPVNIPPFRASIKDGYAMKSTGFS
GTKRVLGCIAAGDSPNSLPLAEDECYKINTGAPLPLEADCVVQVEDTKLL
QLDKNGQESLVDILVEPQAGLDVRPVGYDLSTNDRIFPALDPSPVVVKSL
LASVGNRLILSKPKVAIVSTGSELCSPRNQLTPGKIFDSNTTMLTELLVY
FGFNCMHTCVLSDSFQRTKESLLELFEVVDFVICSGGVSMGDKDFVKSVL
EDLQFRIHCGRVNIKPGKPMTFASRKDKYFFGLPGNPVSAFVTFHLFALP
AIRFAAGWDRCKCSLSVLNVKLLNDFSLDSRPEFVRASVISKSGELYASV
NGNQISSRLQSIVGADVLINLPARTSDRPLAKAGEIFPASVLRFDFISKY
E*
BS10114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cin-PA | 601 | CG2945-PA | 1..601 | 1..601 | 3086 | 100 | Plus |
| cin-PB | 601 | CG2945-PB | 1..601 | 1..601 | 3086 | 100 | Plus |
