Clone BS10115 Report

Search the DGRC for BS10115

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptcrc-RB
Protein status:BS10115.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10115.3prime Sequence

892 bp (860 high quality bases) assembled on 2006-04-19

> BS10115.3prime
ATGGTCTAGAAAGCTTCTAGCGCTTGCGTTCATGGTAGAACTCTCGAATC
AGCTGGCGCAGATAGCGCATTTCGTTGTGCCGCTCCTGCAGAGTGCGACG
AAGCTGCTCGTTTTCTTTAGACAGCACATGCTCCTCGCCCAGCACATTCT
CCATTTCAAGTTTCTTTTTCTGGCGATATCGTGTGGCAGCGTTCTTGTTC
TGCTCCTTTTTCCTGATCTTTCGATCCTCTACACCGCGCCCGTAAGTGCG
AGTACGCTTTTTTGGCTGGGACGCAGACTGCTCGATGGTTGTAGGAGCTG
GCGAGGAGGAGCTGCTGATAAGCTCTGGAACCCAGTCCTCGTCGGCGTCG
GCGATGCTGCTGCACACTCCGCTTCCTGTGCTTCTGCTGTCTAAAGATGA
AGACGCCTGAGACTCGCAGTCCTCATTGAGCTGCTGCCAGTTCGTGGACA
ATTCGAGCTCCTTAGCACGCATATTGACGATATCATCGACCAGTTGGTTC
TCTCGGGCAATTTCGCTGCCGCCTACCCAGTTGGTAAAGTTAAAGGGCGT
GGCAGATGCTGCGTGTGTAACATCAGGAGTATAGCATTGCACCTTTTGCT
CGGCCTTTACGAGCACGGGTTTTGGCTGTGCATCGCCCGCCTGTTTGTAA
GCATCGAATTGAGGCGGAGACTGCGGCGGCGTTAATTGCTGTAGAATAAG
GGATGGGCCATCATTGAGCTGGTAATCAGCGGCAGAAGGAAGCGAAGCAG
CGTCTGAAGATGCACCGAATTGTACTTTGTTTGCGGGTACTATGGCCTGA
GTTATAACATTAATGTTCGGCTGAAAGCTGTTACTGTCATAATCGATGCA
GTTCAACGTTGCCTTTTGGGTCAAAAGACATTCATATGCTTG

BS10115.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8669-PB 897 crc-RB 22..897 892..17 4330 99.7 Minus
CG8669-PA 1146 crc-RA 280..1146 883..17 4285 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
crc-RB 2515 CG8669-RB 1170..2045 892..17 4350 99.8 Minus
crc-RF 1878 CG8669-RF 542..1408 883..17 4305 99.8 Minus
crc-RE 2244 CG8669-RE 908..1774 883..17 4305 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21318484..21319057 590..17 2870 100 Minus
2L 23513712 2L 21318126..21318419 883..590 1440 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 13:01:54 has no hits.

BS10115.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:46 Download gff for BS10115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8669-PB 22..897 17..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:12 Download gff for BS10115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8669-PB 22..897 17..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:24:04 Download gff for BS10115.3prime
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1170..2050 10..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:23 Download gff for BS10115.3prime
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1170..2050 10..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:23 Download gff for BS10115.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21318124..21318419 590..886 98 -> Minus
2L 21318485..21319062 10..589 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:24:04 Download gff for BS10115.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21318124..21318419 590..886 98 -> Minus
arm_2L 21318485..21319062 10..589 99   Minus

BS10115.5prime Sequence

927 bp (879 high quality bases) assembled on 2006-04-19

> BS10115.5prime
GAAGTTATCAGTCGACATGAGCACCTATATATTTATGCAAGCATATGAAT
GTCTTTTGGACCAAAAGGCAACGTTGAACTGCATCGATTATGACAGTAAC
AGCTTTCAGCCGAACATTAATGTTATAACTCAGGCCATAGTACCCGCAAA
CAAAGTACAATTCGGTGCATCTTCAGACGCTGCTTCGCTTCCTTCTGCCG
CTGATTACCAGCTCAATGATGGCCCATCCCTTATTCTACAGCAATTAACG
CCGCCGCAGTCTCCGCCTCAATTCGATGCTTACAAACAGGCGGGCGATGC
ACAGCCAAAACCCGTGCTCGTAAAGGCCGAGCAAAAGGTGCAATGCTATA
CTCCTGATGTTACACACGCAGCATCTGCCACGCCCTTTAACTTTACCAAC
TGGGTAGGCGGCAGCGAAATTGCCCGAGAGAACCAACTGGTCGATGATAT
CGTCAATATGCGTGCTAAGGAGCTCGAATTGTCCACGAACTGGCAGCAGC
TCAATGAGGACTGCGAGTCTCAGGCGTCTTCATCTTTAGACAGCAGAAGC
ACAGGAAGCGGAGTGTGCAGCAGCATCGCCGACGCCGACGAGGACTGGGT
TCCAGAGCTTATCAGCAGCTCCTCCTCGCCAGCTCCTACAACCATCGAGC
AGTCTGCGTCCCAGCCAAAAAAGCGTACTCGCACTTACGGGCGCGGTGTA
GAGGATCGAAAGATCAGGAAAAAGGAGCAGAACAAGAACGCTGCCACACG
ATATCGCCAGAAAAAGAAACTTGAAATGGAGAATGTGCTGGGCGAGGAGC
ATGTGCTGTCTAAAGAAAACGAGCAGCTTCGTCGCACTCTGCAGGAGCGG
CACAACGAAATGCGCTATCTGCGCCAGCTGATTCGAGAGTTCTACCATGA
ACGCAAGCGCTAGAAGCTTTCTAAACC

BS10115.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8669-PB 897 crc-RB 1..897 17..913 4485 100 Plus
CG8669-PA 1146 crc-RA 280..1146 47..913 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
crc-RB 2515 CG8669-RB 1149..2045 17..913 4485 100 Plus
crc-RF 1878 CG8669-RF 542..1408 47..913 4335 100 Plus
crc-RE 2244 CG8669-RE 908..1774 47..913 4335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21318484..21319057 340..913 2870 100 Plus
2L 23513712 2L 21318126..21318419 47..340 1470 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:36:04 has no hits.

BS10115.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:47 Download gff for BS10115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8669-PB 1..897 17..913 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:13 Download gff for BS10115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8669-PB 1..897 17..913 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:15 Download gff for BS10115.5prime
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1149..2050 17..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:24 Download gff for BS10115.5prime
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1149..2050 17..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:24 Download gff for BS10115.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21318127..21318419 48..340 100 -> Plus
2L 21315509..21315538 18..47 100 -> Plus
2L 21318485..21319062 341..920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:15 Download gff for BS10115.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21315509..21315538 18..47 100 -> Plus
arm_2L 21318127..21318419 48..340 100 -> Plus
arm_2L 21318485..21319062 341..920 99   Plus

BS10115.complete Sequence

929 bp (929 high quality bases) assembled on 2006-03-25

> BS10115.complete
GAAGTTATCAGTCGACATGAGCACCTATATATTTATGCAAGCATATGAAT
GTCTTTTGGACCAAAAGGCAACGTTGAACTGCATCGATTATGACAGTAAC
AGCTTTCAGCCGAACATTAATGTTATAACTCAGGCCATAGTACCCGCAAA
CAAAGTACAATTCGGTGCATCTTCAGACGCTGCTTCGCTTCCTTCTGCCG
CTGATTACCAGCTCAATGATGGCCCATCCCTTATTCTACAGCAATTAACG
CCGCCGCAGTCTCCGCCTCAATTCGATGCTTACAAACAGGCGGGCGATGC
ACAGCCAAAACCCGTGCTCGTAAAGGCCGAGCAAAAGGTGCAATGCTATA
CTCCTGATGTTACACACGCAGCATCTGCCACGCCCTTTAACTTTACCAAC
TGGGTAGGCGGCAGCGAAATTGCCCGAGAGAACCAACTGGTCGATGATAT
CGTCAATATGCGTGCTAAGGAGCTCGAATTGTCCACGAACTGGCAGCAGC
TCAATGAGGACTGCGAGTCTCAGGCGTCTTCATCTTTAGACAGCAGAAGC
ACAGGAAGCGGAGTGTGCAGCAGCATCGCCGACGCCGACGAGGACTGGGT
TCCAGAGCTTATCAGCAGCTCCTCCTCGCCAGCTCCTACAACCATCGAGC
AGTCTGCGTCCCAGCCAAAAAAGCGTACTCGCACTTACGGGCGCGGTGTA
GAGGATCGAAAGATCAGGAAAAAGGAGCAGAACAAGAACGCTGCCACACG
ATATCGCCAGAAAAAGAAACTTGAAATGGAGAATGTGCTGGGCGAGGAGC
ATGTGCTGTCTAAAGAAAACGAGCAGCTTCGTCGCACTCTGCAGGAGCGG
CACAACGAAATGCGCTATCTGCGCCAGCTGATTCGAGAGTTCTACCATGA
ACGCAAGCGCTAGAAGCTTTCTAGACCAT

BS10115.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
crc-RB 897 CG8669-PB 1..897 17..913 4485 100 Plus
crc-RF 1119 CG8669-PF 253..1119 47..913 4335 100 Plus
crc-RE 1146 CG8669-PE 280..1146 47..913 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
crc-RB 2515 CG8669-RB 1149..2045 17..913 4485 100 Plus
crc-RF 1878 CG8669-RF 542..1408 47..913 4335 100 Plus
crc-RE 2244 CG8669-RE 908..1774 47..913 4335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21318484..21319057 340..913 2870 100 Plus
2L 23513712 2L 21318126..21318419 47..340 1470 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:32:19 has no hits.

BS10115.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:12 Download gff for BS10115.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1..897 17..913 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:49 Download gff for BS10115.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1143..2044 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:52 Download gff for BS10115.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1149..2045 17..913 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:13 Download gff for BS10115.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1143..2044 17..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:22 Download gff for BS10115.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RB 1149..2045 17..913 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:22 Download gff for BS10115.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21315508..21315538 17..47 100 -> Plus
2L 21318127..21318419 48..340 100 -> Plus
2L 21318485..21319057 341..913 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:52 Download gff for BS10115.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21315508..21315538 17..47 100 -> Plus
arm_2L 21318127..21318419 48..340 100 -> Plus
arm_2L 21318485..21319057 341..913 100   Plus

BS10115.pep Sequence

Translation from 16 to 912

> BS10115.pep
MSTYIFMQAYECLLDQKATLNCIDYDSNSFQPNINVITQAIVPANKVQFG
ASSDAASLPSAADYQLNDGPSLILQQLTPPQSPPQFDAYKQAGDAQPKPV
LVKAEQKVQCYTPDVTHAASATPFNFTNWVGGSEIARENQLVDDIVNMRA
KELELSTNWQQLNEDCESQASSSLDSRSTGSGVCSSIADADEDWVPELIS
SSSSPAPTTIEQSASQPKKRTRTYGRGVEDRKIRKKEQNKNAATRYRQKK
KLEMENVLGEEHVLSKENEQLRRTLQERHNEMRYLRQLIREFYHERKR*

BS10115.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
crc-PB 298 CG8669-PB 1..298 1..298 1539 100 Plus
crc-PF 372 CG8669-PF 85..372 11..298 1487 100 Plus
crc-PE 381 CG8669-PE 94..381 11..298 1487 100 Plus
crc-PA 381 CG8669-PA 94..381 11..298 1487 100 Plus