Clone Sequence Records
BS10115.3prime Sequence
892 bp (860 high quality bases) assembled on 2006-04-19
> BS10115.3prime
ATGGTCTAGAAAGCTTCTAGCGCTTGCGTTCATGGTAGAACTCTCGAATC
AGCTGGCGCAGATAGCGCATTTCGTTGTGCCGCTCCTGCAGAGTGCGACG
AAGCTGCTCGTTTTCTTTAGACAGCACATGCTCCTCGCCCAGCACATTCT
CCATTTCAAGTTTCTTTTTCTGGCGATATCGTGTGGCAGCGTTCTTGTTC
TGCTCCTTTTTCCTGATCTTTCGATCCTCTACACCGCGCCCGTAAGTGCG
AGTACGCTTTTTTGGCTGGGACGCAGACTGCTCGATGGTTGTAGGAGCTG
GCGAGGAGGAGCTGCTGATAAGCTCTGGAACCCAGTCCTCGTCGGCGTCG
GCGATGCTGCTGCACACTCCGCTTCCTGTGCTTCTGCTGTCTAAAGATGA
AGACGCCTGAGACTCGCAGTCCTCATTGAGCTGCTGCCAGTTCGTGGACA
ATTCGAGCTCCTTAGCACGCATATTGACGATATCATCGACCAGTTGGTTC
TCTCGGGCAATTTCGCTGCCGCCTACCCAGTTGGTAAAGTTAAAGGGCGT
GGCAGATGCTGCGTGTGTAACATCAGGAGTATAGCATTGCACCTTTTGCT
CGGCCTTTACGAGCACGGGTTTTGGCTGTGCATCGCCCGCCTGTTTGTAA
GCATCGAATTGAGGCGGAGACTGCGGCGGCGTTAATTGCTGTAGAATAAG
GGATGGGCCATCATTGAGCTGGTAATCAGCGGCAGAAGGAAGCGAAGCAG
CGTCTGAAGATGCACCGAATTGTACTTTGTTTGCGGGTACTATGGCCTGA
GTTATAACATTAATGTTCGGCTGAAAGCTGTTACTGTCATAATCGATGCA
GTTCAACGTTGCCTTTTGGGTCAAAAGACATTCATATGCTTG
BS10115.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8669-PB | 897 | crc-RB | 22..897 | 892..17 | 4330 | 99.7 | Minus |
CG8669-PA | 1146 | crc-RA | 280..1146 | 883..17 | 4285 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crc-RB | 2515 | CG8669-RB | 1170..2045 | 892..17 | 4350 | 99.8 | Minus |
crc-RF | 1878 | CG8669-RF | 542..1408 | 883..17 | 4305 | 99.8 | Minus |
crc-RE | 2244 | CG8669-RE | 908..1774 | 883..17 | 4305 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21318484..21319057 | 590..17 | 2870 | 100 | Minus |
2L | 23513712 | 2L | 21318126..21318419 | 883..590 | 1440 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:01:54 has no hits.
BS10115.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:46 Download gff for
BS10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8669-PB | 22..897 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:12 Download gff for
BS10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8669-PB | 22..897 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:24:04 Download gff for
BS10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crc-RB | 1170..2050 | 10..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:27:23 Download gff for
BS10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crc-RB | 1170..2050 | 10..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:27:23 Download gff for
BS10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21318124..21318419 | 590..886 | 98 | -> | Minus |
2L | 21318485..21319062 | 10..589 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:24:04 Download gff for
BS10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21318124..21318419 | 590..886 | 98 | -> | Minus |
arm_2L | 21318485..21319062 | 10..589 | 99 | | Minus |
BS10115.5prime Sequence
927 bp (879 high quality bases) assembled on 2006-04-19
> BS10115.5prime
GAAGTTATCAGTCGACATGAGCACCTATATATTTATGCAAGCATATGAAT
GTCTTTTGGACCAAAAGGCAACGTTGAACTGCATCGATTATGACAGTAAC
AGCTTTCAGCCGAACATTAATGTTATAACTCAGGCCATAGTACCCGCAAA
CAAAGTACAATTCGGTGCATCTTCAGACGCTGCTTCGCTTCCTTCTGCCG
CTGATTACCAGCTCAATGATGGCCCATCCCTTATTCTACAGCAATTAACG
CCGCCGCAGTCTCCGCCTCAATTCGATGCTTACAAACAGGCGGGCGATGC
ACAGCCAAAACCCGTGCTCGTAAAGGCCGAGCAAAAGGTGCAATGCTATA
CTCCTGATGTTACACACGCAGCATCTGCCACGCCCTTTAACTTTACCAAC
TGGGTAGGCGGCAGCGAAATTGCCCGAGAGAACCAACTGGTCGATGATAT
CGTCAATATGCGTGCTAAGGAGCTCGAATTGTCCACGAACTGGCAGCAGC
TCAATGAGGACTGCGAGTCTCAGGCGTCTTCATCTTTAGACAGCAGAAGC
ACAGGAAGCGGAGTGTGCAGCAGCATCGCCGACGCCGACGAGGACTGGGT
TCCAGAGCTTATCAGCAGCTCCTCCTCGCCAGCTCCTACAACCATCGAGC
AGTCTGCGTCCCAGCCAAAAAAGCGTACTCGCACTTACGGGCGCGGTGTA
GAGGATCGAAAGATCAGGAAAAAGGAGCAGAACAAGAACGCTGCCACACG
ATATCGCCAGAAAAAGAAACTTGAAATGGAGAATGTGCTGGGCGAGGAGC
ATGTGCTGTCTAAAGAAAACGAGCAGCTTCGTCGCACTCTGCAGGAGCGG
CACAACGAAATGCGCTATCTGCGCCAGCTGATTCGAGAGTTCTACCATGA
ACGCAAGCGCTAGAAGCTTTCTAAACC
BS10115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8669-PB | 897 | crc-RB | 1..897 | 17..913 | 4485 | 100 | Plus |
CG8669-PA | 1146 | crc-RA | 280..1146 | 47..913 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crc-RB | 2515 | CG8669-RB | 1149..2045 | 17..913 | 4485 | 100 | Plus |
crc-RF | 1878 | CG8669-RF | 542..1408 | 47..913 | 4335 | 100 | Plus |
crc-RE | 2244 | CG8669-RE | 908..1774 | 47..913 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21318484..21319057 | 340..913 | 2870 | 100 | Plus |
2L | 23513712 | 2L | 21318126..21318419 | 47..340 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:36:04 has no hits.
BS10115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:47 Download gff for
BS10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8669-PB | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:13 Download gff for
BS10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8669-PB | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:51:15 Download gff for
BS10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crc-RB | 1149..2050 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:10:24 Download gff for
BS10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crc-RB | 1149..2050 | 17..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:10:24 Download gff for
BS10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21318127..21318419 | 48..340 | 100 | -> | Plus |
2L | 21315509..21315538 | 18..47 | 100 | -> | Plus |
2L | 21318485..21319062 | 341..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:51:15 Download gff for
BS10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21315509..21315538 | 18..47 | 100 | -> | Plus |
arm_2L | 21318127..21318419 | 48..340 | 100 | -> | Plus |
arm_2L | 21318485..21319062 | 341..920 | 99 | | Plus |
BS10115.complete Sequence
929 bp (929 high quality bases) assembled on 2006-03-25
> BS10115.complete
GAAGTTATCAGTCGACATGAGCACCTATATATTTATGCAAGCATATGAAT
GTCTTTTGGACCAAAAGGCAACGTTGAACTGCATCGATTATGACAGTAAC
AGCTTTCAGCCGAACATTAATGTTATAACTCAGGCCATAGTACCCGCAAA
CAAAGTACAATTCGGTGCATCTTCAGACGCTGCTTCGCTTCCTTCTGCCG
CTGATTACCAGCTCAATGATGGCCCATCCCTTATTCTACAGCAATTAACG
CCGCCGCAGTCTCCGCCTCAATTCGATGCTTACAAACAGGCGGGCGATGC
ACAGCCAAAACCCGTGCTCGTAAAGGCCGAGCAAAAGGTGCAATGCTATA
CTCCTGATGTTACACACGCAGCATCTGCCACGCCCTTTAACTTTACCAAC
TGGGTAGGCGGCAGCGAAATTGCCCGAGAGAACCAACTGGTCGATGATAT
CGTCAATATGCGTGCTAAGGAGCTCGAATTGTCCACGAACTGGCAGCAGC
TCAATGAGGACTGCGAGTCTCAGGCGTCTTCATCTTTAGACAGCAGAAGC
ACAGGAAGCGGAGTGTGCAGCAGCATCGCCGACGCCGACGAGGACTGGGT
TCCAGAGCTTATCAGCAGCTCCTCCTCGCCAGCTCCTACAACCATCGAGC
AGTCTGCGTCCCAGCCAAAAAAGCGTACTCGCACTTACGGGCGCGGTGTA
GAGGATCGAAAGATCAGGAAAAAGGAGCAGAACAAGAACGCTGCCACACG
ATATCGCCAGAAAAAGAAACTTGAAATGGAGAATGTGCTGGGCGAGGAGC
ATGTGCTGTCTAAAGAAAACGAGCAGCTTCGTCGCACTCTGCAGGAGCGG
CACAACGAAATGCGCTATCTGCGCCAGCTGATTCGAGAGTTCTACCATGA
ACGCAAGCGCTAGAAGCTTTCTAGACCAT
BS10115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crc-RB | 897 | CG8669-PB | 1..897 | 17..913 | 4485 | 100 | Plus |
crc-RF | 1119 | CG8669-PF | 253..1119 | 47..913 | 4335 | 100 | Plus |
crc-RE | 1146 | CG8669-PE | 280..1146 | 47..913 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crc-RB | 2515 | CG8669-RB | 1149..2045 | 17..913 | 4485 | 100 | Plus |
crc-RF | 1878 | CG8669-RF | 542..1408 | 47..913 | 4335 | 100 | Plus |
crc-RE | 2244 | CG8669-RE | 908..1774 | 47..913 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21318484..21319057 | 340..913 | 2870 | 100 | Plus |
2L | 23513712 | 2L | 21318126..21318419 | 47..340 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:32:19 has no hits.
BS10115.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:12 Download gff for
BS10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crc-RB | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:49 Download gff for
BS10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crc-RB | 1143..2044 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:52 Download gff for
BS10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crc-RB | 1149..2045 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:13 Download gff for
BS10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crc-RB | 1143..2044 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:22 Download gff for
BS10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crc-RB | 1149..2045 | 17..913 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:22 Download gff for
BS10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21315508..21315538 | 17..47 | 100 | -> | Plus |
2L | 21318127..21318419 | 48..340 | 100 | -> | Plus |
2L | 21318485..21319057 | 341..913 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:52 Download gff for
BS10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21315508..21315538 | 17..47 | 100 | -> | Plus |
arm_2L | 21318127..21318419 | 48..340 | 100 | -> | Plus |
arm_2L | 21318485..21319057 | 341..913 | 100 | | Plus |
BS10115.pep Sequence
Translation from 16 to 912
> BS10115.pep
MSTYIFMQAYECLLDQKATLNCIDYDSNSFQPNINVITQAIVPANKVQFG
ASSDAASLPSAADYQLNDGPSLILQQLTPPQSPPQFDAYKQAGDAQPKPV
LVKAEQKVQCYTPDVTHAASATPFNFTNWVGGSEIARENQLVDDIVNMRA
KELELSTNWQQLNEDCESQASSSLDSRSTGSGVCSSIADADEDWVPELIS
SSSSPAPTTIEQSASQPKKRTRTYGRGVEDRKIRKKEQNKNAATRYRQKK
KLEMENVLGEEHVLSKENEQLRRTLQERHNEMRYLRQLIREFYHERKR*
BS10115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
crc-PB | 298 | CG8669-PB | 1..298 | 1..298 | 1539 | 100 | Plus |
crc-PF | 372 | CG8669-PF | 85..372 | 11..298 | 1487 | 100 | Plus |
crc-PE | 381 | CG8669-PE | 94..381 | 11..298 | 1487 | 100 | Plus |
crc-PA | 381 | CG8669-PA | 94..381 | 11..298 | 1487 | 100 | Plus |