Clone Sequence Records
BS10118.3prime Sequence
920 bp (765 high quality bases) assembled on 2006-04-19
> BS10118.3prime
ATGGTCTAGAAAGCTTCTATTTGACTGCCACGTCGGGGGAAGCACTAGTG
GCCTGGAACTTGGTCTCTAGAGCGGTGACCGTGCCCAAATCGCCACATAA
CTTCCGGAAGAGGACCACATAGCCGAGGTCGCCGCAGGCCACTCGAATTG
CCTTTAGGACACTCCACAAGGCCAGGACCAGAAAAAGAACCATGCAATAC
GGCTGTATGTGTTGGACAATGTTGACGTTGATCCACATAAGGGAGGTCAC
GAAACCGGGCAGCTGTCCCATTTCGAACTCATACCAAAAACTGGGAATCA
TCATGTTGCTAAACCGGCTTAGGCGTGAGCTAAACCTCCTGAGATCCGGA
ATAGGAATGTTGGACTGGAAGCGGTATTTCTCCGTAACCGGAATACCAGT
GACCGGCTCCAGCAAAATGTATGGCTCGTGATCCTCGGCGTTGGGTGTGT
ATCCTTCGTAGTGCTGGCTCCAGTTGTAGCTGCTTCCGTAAAAGTGTGGC
ATCGAAAACGCAGAGGGGGCGTCATTTATCACACACTGGGATACGTCAAA
CATTCCGTCGGGTAGCTTGACACCGTAGCTTGTGTCCAGGCAGCCGGGAG
GCTTTTGATGTGACTGAAGCAGAGTGTAGCGGAAGGTATCAAGGCCGTTG
TAACGCTCCTGACGCTGGTAGGTCAGCGGAAGGACCCGGCAGGACTCGAT
AGCCACTATGCTCAGCGGCGTATCCGGCTGGACAAAGGGAGGAAAGAGAG
AGTTGTCCAGCGCTCCGGAAACGTTAAAGGGGCAAGAGTTGGAGTCGTAC
TGACGGGTGTGCGGAAGTTGTTCCCGGATGATCACCTCGCCGTTAAGCGT
CTCGATGCGGAAAAGTTTTCAATGCCGCGCTTAGGGCCGATGTTGACTGT
GTAAACCTCTTCCTTCTCTT
BS10118.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2736-PA | 1524 | CG2736-RA | 677..1524 | 864..17 | 4240 | 100 | Minus |
| CG2736-PA | 1524 | CG2736-RA | 620..679 | 920..861 | 300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2736-RA | 1726 | CG2736-RA | 703..1607 | 920..17 | 4500 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24974182..24974577 | 526..920 | 1930 | 99.7 | Plus |
| 2R | 25286936 | 2R | 24973550..24973807 | 17..274 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 24973864..24974115 | 274..525 | 1260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:05:35 has no hits.
BS10118.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:50 Download gff for
BS10118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-PA | 620..1524 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:18 Download gff for
BS10118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-PA | 620..1524 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:46:27 Download gff for
BS10118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 703..1613 | 10..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:27 Download gff for
BS10118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 703..1613 | 10..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:27 Download gff for
BS10118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24973865..24974115 | 275..525 | 100 | <- | Plus |
| 2R | 24973544..24973807 | 10..274 | 98 | <- | Plus |
| 2R | 24974182..24974577 | 526..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:46:27 Download gff for
BS10118.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20861067..20861330 | 10..274 | 98 | <- | Plus |
| arm_2R | 20861388..20861638 | 275..525 | 100 | <- | Plus |
| arm_2R | 20861705..20862100 | 526..920 | 99 | | Plus |
BS10118.5prime Sequence
909 bp (850 high quality bases) assembled on 2006-04-19
> BS10118.5prime
GAAGTTATCAGTCGACATGAAGTCGGTTCAGTGGGTGAAAATATTGCTTT
GCCTGATCCTTGCGTGCGTCAATGTATTCCTCTTCGTGGTGTCTTGGGGA
GTGGACTATCGCATCTTGGTAGCTAGGGAGCATATACGCTTCCGCCAGGA
GATGCCCACCATGGACAGTTGGATAAACTCGCCATTCGGGAAGCTGAAAA
ACTATGTGTTCAACGTGACCAACGCCGAGGAGTTTCGCAGCGGTCGTGAT
AGCAGACTTAAGGTAAAGGAGATCGGCCCCATTGTGTACAGAATCGTGGG
GTTCAACGACATCTTAGATCGCAACGAGACCAACGTTAGGTATCGCAAGC
ACAGATACCGCGTAGTGGAATTCCTCCCGGAGGAAAGCGTAGCACCCGAC
GTCCTTAACTGGACCATTACCTCCACAAACAACGTTATCCTGGGCGCAGC
GACGAAAGTCAAGCATACGGCGCCACTTGCAGCCTTCGGTTTTGATGCAG
CGCTCATGATGGAGGATATATTTGTTACAGACAGCGTATACTACTTCCTG
TGGGAGTTCACCCGTCCCCTGCTGCAAACGCTCTCCAGGATCTCGAACAT
AAGACCCAACGTCGCTGTTCTCTACAACGCTCTCAAAGAGAAGGAAGAGG
TTTACACAGTCAACATCGGCCCTAAGCGCGGCATTGAAAACTTTTTCCGC
ATCGAGACGCTTAACGGCGAGGTGATCATCCGGGAACAACTTCCGCACAC
CCGTCAGTACGACTCCAACTCTTGCCCCTTTAACGTTTCCGGAGCGCTGG
ACAACTCTCTCTTTCCTCCCTTTGTCCAGCCGGATACGCCGCTGAGCATA
GTGGCTATCGAGTCCTGCGGGGTCCTCCGCTGACCTACCAGCGTCAGGAG
CGTTACAAC
BS10118.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2736-PA | 1524 | CG2736-RA | 1..860 | 17..876 | 4275 | 99.8 | Plus |
| CG2736-PA | 1524 | CG2736-RA | 861..894 | 876..909 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2736-RA | 1726 | CG2736-RA | 84..977 | 17..909 | 4430 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24974646..24975258 | 629..17 | 3065 | 100 | Minus |
| 2R | 25286936 | 2R | 24974303..24974584 | 909..629 | 1345 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 05:02:51 has no hits.
BS10118.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:51 Download gff for
BS10118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-PA | 1..894 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:19 Download gff for
BS10118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-PA | 1..894 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:34 Download gff for
BS10118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 76..977 | 10..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:27:25 Download gff for
BS10118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 76..977 | 10..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:27:25 Download gff for
BS10118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24974303..24974584 | 629..909 | 99 | <- | Minus |
| 2R | 24974647..24975264 | 11..628 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:34 Download gff for
BS10118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20861826..20862107 | 629..909 | 99 | <- | Minus |
| arm_2R | 20862170..20862787 | 11..628 | 99 | <- | Minus |
BS10118.complete Sequence
1556 bp (1556 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636565
> BS10118.complete
GAAGTTATCAGTCGACATGAAGTCGGTTCAGTGGGTGAAAATATTGCTTT
GCCTGATCCTTGCGTGCGTCAATGTATTCCTCTTCGTGGTGTCTTGGGGA
GTGGACTATCGCATCTTGGTAGCTAGGGAGCATATACGCTTCCGCCAGGA
GATGCCCACCATGGACAGTTGGATAAACTCGCCATTCGGGAAGCTGAAAA
ACTATGTGTTCAACGTGACCAACGCCGAGGAGTTTCGCAGCGGTCGTGAT
AGCAGACTTAAGGTAAAGGAGATCGGCCCCATTGTGTACAGAATCGTGGG
GTTCAACGACATCTTAGATCGCAACGAGACCAACGTTAGGTATCGCAAGC
ACAGATACCGCGTAGTGGAATTCCTCCCGGAGGAAAGCGTAGCACCCGAC
GTCCTTAACTGGACCATTACCTCCACAAACAACGTTATCCTGGGCGCAGC
GACGAAAGTCAAGCATACGGCGCCACTTGCAGCCTTCGGTTTTGATGCAG
CGCTCATGATGGAGGATATATTTGTTACAGACAGCGTATACTACTTCCTG
TGGGAGTTCACCCGTCCCCTGCTGCAAACGCTCTCCAGGATCTCGAACAT
AAGACCCAACGTCGCTGTTCTCTACAACGCTCTCAAAGAGAAGGAAGAGG
TTTACACAGTCAACATCGGCCCTAAGCGCGGCATTGAAAACTTTTTCCGC
ATCGAGACGCTTAACGGCGAGGTGATCATCCGGGAACAACTTCCGCACAC
CCGTCAGTACGACTCCAACTCTTGCCCCTTTAACGTTTCCGGAGCGCTGG
ACAACTCTCTCTTTCCTCCCTTTGTCCAGCCGGATACGCCGCTGAGCATA
GTGGCTATCGAGTCCTGCCGGGTCCTTCCGCTGACCTACCAGCGTCAGGA
GCGTTACAACGGCCTTGATACCTTCCGCTACACTCTGCTTCAGTCACATC
AAAAGCCTCCCGGCTGCCTGGACACAAGCTACGGTGTCAAGCTACCCGAC
GGAATGTTTGACGTATCCCAGTGTGTGATAAATGACGCCCCCTCTGCGTT
TTCGATGCCACACTTTTACGGAAGCAGCTACAACTGGAGCCAGCACTACG
AAGGATACACACCCAACGCCGAGGATCACGAGCCATACATTTTGCTGGAG
CCGGTCACTGGTATTCCGGTTACGGAGAAATACCGCTTCCAGTCCAACAT
TCCTATTCCGGATCTCAGGAGGTTTAGCTCACGCCTAAGCCGGTTTAGCA
ACATGATGATTCCCAGTTTTTGGTATGAGTTCGAAATGGGACAGCTGCCC
GGTTTCGTGACCTCCCTTATGTGGATCAACGTCAACATTGTCCAACACAT
ACAGCCGTATTGCATGGTTCTTTTTCTGGTCCTGGCCTTGTGGAGTGTCC
TAAAGGCAATTCGAGTGGCCTGCGGCGACCTCGGCTATGTGGTCCTCTTC
CGGAAGTTATGTGGCGATTTGGGCACGGTCACCGCTCTAGAGACCAAGTT
CCAGGCCACTAGTGCTTCCCCCGACGTGGCAGTCAAATAGAAGCTTTCTA
GACCAT
BS10118.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2736-RA | 1524 | CG2736-PA | 1..1524 | 17..1540 | 7620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2736-RA | 1726 | CG2736-RA | 84..1607 | 17..1540 | 7620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24974646..24975258 | 629..17 | 3065 | 100 | Minus |
| 2R | 25286936 | 2R | 24974182..24974584 | 1031..629 | 2015 | 100 | Minus |
| 2R | 25286936 | 2R | 24973550..24973807 | 1540..1283 | 1290 | 100 | Minus |
| 2R | 25286936 | 2R | 24973864..24974115 | 1283..1032 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:44:54 has no hits.
BS10118.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:14 Download gff for
BS10118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 1..1524 | 17..1540 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:51 Download gff for
BS10118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 106..1643 | 10..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:50 Download gff for
BS10118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 84..1601 | 17..1534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:14 Download gff for
BS10118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 106..1643 | 10..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:49 Download gff for
BS10118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2736-RA | 84..1601 | 17..1534 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:49 Download gff for
BS10118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24973556..24973807 | 1283..1534 | 100 | <- | Minus |
| 2R | 24973865..24974115 | 1032..1282 | 100 | <- | Minus |
| 2R | 24974182..24974584 | 629..1031 | 100 | <- | Minus |
| 2R | 24974647..24975258 | 17..628 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:50 Download gff for
BS10118.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20861079..20861330 | 1283..1534 | 100 | <- | Minus |
| arm_2R | 20861388..20861638 | 1032..1282 | 100 | <- | Minus |
| arm_2R | 20861705..20862107 | 629..1031 | 100 | <- | Minus |
| arm_2R | 20862170..20862781 | 17..628 | 100 | | Minus |
BS10118.pep Sequence
Translation from 16 to 1539
> BS10118.pep
MKSVQWVKILLCLILACVNVFLFVVSWGVDYRILVAREHIRFRQEMPTMD
SWINSPFGKLKNYVFNVTNAEEFRSGRDSRLKVKEIGPIVYRIVGFNDIL
DRNETNVRYRKHRYRVVEFLPEESVAPDVLNWTITSTNNVILGAATKVKH
TAPLAAFGFDAALMMEDIFVTDSVYYFLWEFTRPLLQTLSRISNIRPNVA
VLYNALKEKEEVYTVNIGPKRGIENFFRIETLNGEVIIREQLPHTRQYDS
NSCPFNVSGALDNSLFPPFVQPDTPLSIVAIESCRVLPLTYQRQERYNGL
DTFRYTLLQSHQKPPGCLDTSYGVKLPDGMFDVSQCVINDAPSAFSMPHF
YGSSYNWSQHYEGYTPNAEDHEPYILLEPVTGIPVTEKYRFQSNIPIPDL
RRFSSRLSRFSNMMIPSFWYEFEMGQLPGFVTSLMWINVNIVQHIQPYCM
VLFLVLALWSVLKAIRVACGDLGYVVLFRKLCGDLGTVTALETKFQATSA
SPDVAVK*
BS10118.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2736-PA | 507 | CG2736-PA | 1..507 | 1..507 | 2678 | 100 | Plus |
| emp-PE | 508 | CG2727-PE | 41..469 | 40..469 | 287 | 25.3 | Plus |
| emp-PD | 520 | CG2727-PD | 53..481 | 40..469 | 287 | 25.3 | Plus |
| CG3829-PB | 597 | CG3829-PB | 92..545 | 14..465 | 284 | 23.3 | Plus |
| CG3829-PA | 597 | CG3829-PA | 92..545 | 14..465 | 284 | 23.3 | Plus |
