Clone Sequence Records
BS10121.3prime Sequence
933 bp (854 high quality bases) assembled on 2006-04-19
> BS10121.3prime
ATGGTCTAGAAAGCTTTCAGGAGCCGGGCCCCTTTGTCGCCTGATTGCTC
CGATTGTGCTGGTCGATGTTGTAGTGATAGAAGAATGACTTGCCGTACTC
GAAGGACGAAATCATTATCGCACATGCGGGCGCTACCTTGAAGAGTCGGG
GCCCCAGTCCAGAGAAAATGGCGGGCACACCGCCCATGCGGTAAATGCTG
GCCAGGCGCATCGCCACCGACTTGGTGGCCACTTGCTTGGGTGGATTATC
TGAGAATATGAACTTCTCGCCGAATTCGATCTGCTCGTGCGTTTTCACCA
CATCGAAGGGCGTGGTGATGGTGGCGGCCACCGATCCGGATATCGCTCCC
GCCGCAAAGCTGAAGCTAAACGTTGGCTCCACAACGCCAAAGGAGCTCTT
GAGGTACTCGTAGCAGGTCCAGTAGATGCCGGAGAAGGGCACGTCGCGCA
GGATGGTTGGCGGCAGACCGCGCCACAAGCCCAGCACGCCCTGCGACTGC
ACCACTTGGCGAATGGTGCCAAACATCTCGGCGTGCGTCATGCGCTGCGA
TTGCATCTTGGTGCGGATTAGCTCGACGGGACTTACACAGGTTACGGCCA
GAATGCGGCCCGACACGCCGGCCAGCAGCGGCACCAGAAATGGAATCGGG
TGTGGAATGTCGTGGGCAATGGTATCCGGGCGTCGCGTGTATTTGTAGTG
GATATCGGTGAAACGGGCCTTGAACTGCTCATAAGCCACGAAGTATATGA
TGGTCGAGGGCAGGGCCGAGATTAGCGTTGGGCTGAGCCCCGACCACAGG
GAGCCGATGCCCTCAGTGCGGCTGATTTTGATGAATGCGTCAATGGTGCC
AGAAAAACGGGGAGCGGGCTTGGCGGCTGCTGGGTTGGGCGTGTCCGGGC
CGCAGGGGCAGATGTGGGTCATGAGGCCGTTGC
BS10121.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14209-PB | 1164 | Shawn-RB | 248..1164 | 933..17 | 4535 | 99.7 | Minus |
CG14209-PC | 1164 | Shawn-RC | 248..1164 | 933..17 | 4535 | 99.7 | Minus |
CG14209-PD | 1164 | Shawn-RD | 248..1164 | 933..17 | 4535 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shawn-RE | 3255 | CG14209-RE | 2138..3055 | 933..16 | 4560 | 99.8 | Minus |
Shawn-RD | 1618 | CG14209-RD | 501..1418 | 933..16 | 4560 | 99.8 | Minus |
Shawn-RC | 3032 | CG14209-RC | 1936..2853 | 933..16 | 4560 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19614442..19614953 | 841..330 | 2560 | 100 | Minus |
X | 23542271 | X | 19615181..19615417 | 252..16 | 1185 | 100 | Minus |
X | 23542271 | X | 19614291..19614383 | 933..841 | 435 | 97.8 | Minus |
X | 23542271 | X | 19615023..19615105 | 332..250 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:57:12 has no hits.
BS10121.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:57 Download gff for
BS10121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-PC | 248..1164 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:26 Download gff for
BS10121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14209-PD | 248..1164 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:51:08 Download gff for
BS10121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RB | 1847..2771 | 9..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:18 Download gff for
BS10121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RC | 1936..2860 | 9..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:18 Download gff for
BS10121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19614291..19614382 | 842..933 | 97 | -> | Minus |
X | 19614442..19614951 | 332..841 | 100 | -> | Minus |
X | 19615024..19615105 | 250..331 | 100 | -> | Minus |
X | 19615184..19615424 | 9..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:51:08 Download gff for
BS10121.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19509057..19509138 | 250..331 | 100 | -> | Minus |
arm_X | 19508324..19508415 | 842..933 | 97 | -> | Minus |
arm_X | 19508475..19508984 | 332..841 | 100 | -> | Minus |
arm_X | 19509217..19509457 | 9..249 | 98 | | Minus |
BS10121.5prime Sequence
927 bp (843 high quality bases) assembled on 2006-04-19
> BS10121.5prime
GAAGTTATCAGTCGACATGGCTACGAGGGAGGCCTGCGGCCAGTTTGCTG
CTGCCAGTGCGGCAATGGCGGCTGCTTCCAGTCAAAATCCGTCGAAGGCC
ACGATGACGGACCCCCGTTTTCGGATCCGACCCCTGCAGCAAGTGGCATC
CGCCTGTACCGGCGCCATGGTGACGGCCTGCTTTATGACCCCTCTGGATG
TGATCAAGACCCGCTTGCAGGCACAGCAGCAGGCGCTGCTCTCAAACAAG
TGTTTCCTCTACTGCAACGGCCTCATGGACCACATCTGCCCCTGCGGCCC
GGACACGCCCAACCCAGCAGCCGCCAAGCCCGCTCCCCGTTTTTCTGGCA
CCATTGACGCATTCATCAAAATCAGCCGCACTGAGGGCATCGGCTCCCTG
TGGTCGGGGCTCAGCCCAACGCTAATCTCGGCCCTGCCCTCGACCATCAT
ATACTTCGTGGCTTATGAGCAGTTCAAGGCCCGTTTCACCGATATCCACT
ACAAATACACGCGACGCCCGGATACCATTGCCCACGACATTCCACACCCG
ATTCCATTTCTGGTGCCGCTGCTGGCCGGCGTGTCGGGCCGCATTCTGGC
CGTAACCTGTGTAAGTCCCGTCGAGCTAATCCGCACCAAGATGCAATCGC
AGCGCATGACGCACGCCGAGATGTTTGGCACCATTCGCCAAGTGGTGCAG
TCGCAGGGCGTGCTGGGCTTGTGGCGCGGTCTGCCGCCAACCATCCTGCG
CGACGTGCCCTTCTCCGGCATCTACTGGACCTGCTACGAGTACCTCAAGA
GCTCCTTTGGCGTTGTGGAGCCAACGTTTAGCTTCAGCTTTGCGGCGGGA
GCGATATCCGGATCGGGTGCCGCCCACATCACCACGCCCTTCGATGTGGT
GAAAACGCACGAGCAGATCGAATTCGG
BS10121.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14209-PB | 1164 | Shawn-RB | 1..911 | 17..927 | 4455 | 99.5 | Plus |
CG14209-PC | 1164 | Shawn-RC | 1..911 | 17..927 | 4455 | 99.5 | Plus |
CG14209-PD | 1164 | Shawn-RD | 1..911 | 17..927 | 4455 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shawn-RE | 3255 | CG14209-RE | 1890..2801 | 16..927 | 4500 | 99.6 | Plus |
Shawn-RD | 1618 | CG14209-RD | 253..1164 | 16..927 | 4500 | 99.6 | Plus |
Shawn-RC | 3032 | CG14209-RC | 1688..2599 | 16..927 | 4500 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:35:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19614442..19614952 | 356..866 | 2555 | 100 | Plus |
X | 23542271 | X | 19614213..19614383 | 186..356 | 855 | 100 | Plus |
X | 23542271 | X | 19613974..19614143 | 16..185 | 850 | 100 | Plus |
X | 23542271 | X | 19615027..19615085 | 869..927 | 265 | 96.6 | Plus |
3R | 32079331 | 3R | 7722807..7722912 | 124..229 | 215 | 80.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:35:04 has no hits.
BS10121.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:58 Download gff for
BS10121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-PC | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:28 Download gff for
BS10121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14209-PD | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:22 Download gff for
BS10121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RB | 1592..2510 | 9..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:54 Download gff for
BS10121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RC | 1681..2599 | 9..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:54 Download gff for
BS10121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19613970..19614143 | 11..185 | 98 | -> | Plus |
X | 19614213..19614382 | 186..355 | 100 | -> | Plus |
X | 19614442..19614951 | 356..865 | 100 | -> | Plus |
X | 19615024..19615085 | 866..927 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:22 Download gff for
BS10121.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19508003..19508176 | 11..185 | 98 | -> | Plus |
arm_X | 19508246..19508415 | 186..355 | 100 | -> | Plus |
arm_X | 19508475..19508984 | 356..865 | 100 | -> | Plus |
arm_X | 19509057..19509118 | 866..927 | 93 | | Plus |
BS10121.complete Sequence
1196 bp (1196 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636566
> BS10121.complete
GAAGTTATCAGTCGACATGGCTACGAGGGAGGCCTGCGGCCAGTTTGCTG
CTGCCAGTGCGGCAATGGCGGCTGCTTCCAGTCAAAATCCGTCGAAGGCC
ACGATGACGGACCCCCGTTTTCGGATCCGACCCCTGCAGCAAGTGGCATC
CGCCTGTACCGGCGCCATGGTGACGGCCTGCTTTATGACCCCTCTGGATG
TGATCAAGACCCGCTTGCAGGCACAGCAGCAGGCGCTGCTCTCAAACAAG
TGTTTCCTCTACTGCAACGGCCTCATGGACCACATCTGCCCCTGCGGCCC
GGACACGCCCAACCCAGCAGCCGCCAAGCCCGCTCCCCGTTTTTCTGGCA
CCATTGACGCATTCATCAAAATCAGCCGCACTGAGGGCATCGGCTCCCTG
TGGTCGGGGCTCAGCCCAACGCTAATCTCGGCCCTGCCCTCGACCATCAT
ATACTTCGTGGCTTATGAGCAGTTCAAGGCCCGTTTCACCGATATCCACT
ACAAATACACGCGACGCCCGGATACCATTGCCCACGACATTCCACACCCG
ATTCCATTTCTGGTGCCGCTGCTGGCCGGCGTGTCGGGCCGCATTCTGGC
CGTAACCTGTGTAAGTCCCGTCGAGCTAATCCGCACCAAGATGCAATCGC
AGCGCATGACGCACGCCGAGATGTTTGGCACCATTCGCCAAGTGGTGCAG
TCGCAGGGCGTGCTGGGCTTGTGGCGCGGTCTGCCGCCAACCATCCTGCG
CGACGTGCCCTTCTCCGGCATCTACTGGACCTGCTACGAGTACCTCAAGA
GCTCCTTTGGCGTTGTGGAGCCAACGTTTAGCTTCAGCTTTGCGGCGGGA
GCGATATCCGGATCGGTGGCCGCCACCATCACCACGCCCTTCGATGTGGT
GAAAACGCACGAGCAGATCGAATTCGGCGAGAAGTTCATATTCTCAGATA
ATCCACCCAAGCAAGTGGCCACCAAGTCGGTGGCGATGCGCCTGGCCAGC
ATTTACCGCATGGGCGGTGTGCCCGCCATTTTCTCTGGACTGGGGCCCCG
ACTCTTCAAGGTAGCGCCCGCATGTGCGATAATGATTTCGTCCTTCGAGT
ACGGCAAGTCATTCTTCTATCACTACAACATCGACCAGCACAATCGGAGC
AATCAGGCGACAAAGGGGCCCGGCTCCTGAAAGCTTTCTAGACCAT
BS10121.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shawn-RE | 1164 | CG14209-PE | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Shawn-RD | 1164 | CG14209-PD | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Shawn-RC | 1164 | CG14209-PC | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shawn-RE | 3255 | CG14209-RE | 1890..3055 | 16..1181 | 5830 | 100 | Plus |
Shawn-RD | 1618 | CG14209-RD | 253..1418 | 16..1181 | 5830 | 100 | Plus |
Shawn-RC | 3032 | CG14209-RC | 1688..2853 | 16..1181 | 5830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19614442..19614953 | 356..867 | 2560 | 100 | Plus |
X | 23542271 | X | 19615181..19615417 | 945..1181 | 1185 | 100 | Plus |
X | 23542271 | X | 19614213..19614383 | 186..356 | 855 | 100 | Plus |
X | 23542271 | X | 19613974..19614143 | 16..185 | 850 | 100 | Plus |
X | 23542271 | X | 19615023..19615105 | 865..947 | 415 | 100 | Plus |
3R | 32079331 | 3R | 7722807..7722912 | 124..229 | 215 | 80.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:56:02 has no hits.
BS10121.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:03 Download gff for
BS10121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RD | 1..1164 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:32 Download gff for
BS10121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RB | 1592..2771 | 9..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:03 Download gff for
BS10121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RB | 1600..2762 | 17..1179 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:03 Download gff for
BS10121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RB | 1592..2771 | 9..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:56 Download gff for
BS10121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Shawn-RC | 1689..2851 | 17..1179 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:56 Download gff for
BS10121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19613975..19614143 | 17..185 | 100 | -> | Plus |
X | 19614213..19614382 | 186..355 | 100 | -> | Plus |
X | 19614442..19614951 | 356..865 | 100 | -> | Plus |
X | 19615024..19615105 | 866..947 | 100 | -> | Plus |
X | 19615184..19615415 | 948..1179 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:03 Download gff for
BS10121.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19508008..19508176 | 17..185 | 100 | -> | Plus |
arm_X | 19508246..19508415 | 186..355 | 100 | -> | Plus |
arm_X | 19508475..19508984 | 356..865 | 100 | -> | Plus |
arm_X | 19509057..19509138 | 866..947 | 100 | -> | Plus |
arm_X | 19509217..19509448 | 948..1179 | 100 | | Plus |
BS10121.pep Sequence
Translation from 16 to 1179
> BS10121.pep
MATREACGQFAAASAAMAAASSQNPSKATMTDPRFRIRPLQQVASACTGA
MVTACFMTPLDVIKTRLQAQQQALLSNKCFLYCNGLMDHICPCGPDTPNP
AAAKPAPRFSGTIDAFIKISRTEGIGSLWSGLSPTLISALPSTIIYFVAY
EQFKARFTDIHYKYTRRPDTIAHDIPHPIPFLVPLLAGVSGRILAVTCVS
PVELIRTKMQSQRMTHAEMFGTIRQVVQSQGVLGLWRGLPPTILRDVPFS
GIYWTCYEYLKSSFGVVEPTFSFSFAAGAISGSVAATITTPFDVVKTHEQ
IEFGEKFIFSDNPPKQVATKSVAMRLASIYRMGGVPAIFSGLGPRLFKVA
PACAIMISSFEYGKSFFYHYNIDQHNRSNQATKGPGS*
BS10121.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Shawn-PE | 387 | CG14209-PE | 1..387 | 1..387 | 2021 | 100 | Plus |
Shawn-PD | 387 | CG14209-PD | 1..387 | 1..387 | 2021 | 100 | Plus |
Shawn-PC | 387 | CG14209-PC | 1..387 | 1..387 | 2021 | 100 | Plus |
Shawn-PB | 387 | CG14209-PB | 1..387 | 1..387 | 2021 | 100 | Plus |
CG2616-PB | 449 | CG2616-PB | 73..432 | 22..378 | 1122 | 60.2 | Plus |