Clone BS10121 Report

Search the DGRC for BS10121

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:101
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptShawn-RB
Protein status:BS10121.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10121.3prime Sequence

933 bp (854 high quality bases) assembled on 2006-04-19

> BS10121.3prime
ATGGTCTAGAAAGCTTTCAGGAGCCGGGCCCCTTTGTCGCCTGATTGCTC
CGATTGTGCTGGTCGATGTTGTAGTGATAGAAGAATGACTTGCCGTACTC
GAAGGACGAAATCATTATCGCACATGCGGGCGCTACCTTGAAGAGTCGGG
GCCCCAGTCCAGAGAAAATGGCGGGCACACCGCCCATGCGGTAAATGCTG
GCCAGGCGCATCGCCACCGACTTGGTGGCCACTTGCTTGGGTGGATTATC
TGAGAATATGAACTTCTCGCCGAATTCGATCTGCTCGTGCGTTTTCACCA
CATCGAAGGGCGTGGTGATGGTGGCGGCCACCGATCCGGATATCGCTCCC
GCCGCAAAGCTGAAGCTAAACGTTGGCTCCACAACGCCAAAGGAGCTCTT
GAGGTACTCGTAGCAGGTCCAGTAGATGCCGGAGAAGGGCACGTCGCGCA
GGATGGTTGGCGGCAGACCGCGCCACAAGCCCAGCACGCCCTGCGACTGC
ACCACTTGGCGAATGGTGCCAAACATCTCGGCGTGCGTCATGCGCTGCGA
TTGCATCTTGGTGCGGATTAGCTCGACGGGACTTACACAGGTTACGGCCA
GAATGCGGCCCGACACGCCGGCCAGCAGCGGCACCAGAAATGGAATCGGG
TGTGGAATGTCGTGGGCAATGGTATCCGGGCGTCGCGTGTATTTGTAGTG
GATATCGGTGAAACGGGCCTTGAACTGCTCATAAGCCACGAAGTATATGA
TGGTCGAGGGCAGGGCCGAGATTAGCGTTGGGCTGAGCCCCGACCACAGG
GAGCCGATGCCCTCAGTGCGGCTGATTTTGATGAATGCGTCAATGGTGCC
AGAAAAACGGGGAGCGGGCTTGGCGGCTGCTGGGTTGGGCGTGTCCGGGC
CGCAGGGGCAGATGTGGGTCATGAGGCCGTTGC

BS10121.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14209-PB 1164 Shawn-RB 248..1164 933..17 4535 99.7 Minus
CG14209-PC 1164 Shawn-RC 248..1164 933..17 4535 99.7 Minus
CG14209-PD 1164 Shawn-RD 248..1164 933..17 4535 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Shawn-RE 3255 CG14209-RE 2138..3055 933..16 4560 99.8 Minus
Shawn-RD 1618 CG14209-RD 501..1418 933..16 4560 99.8 Minus
Shawn-RC 3032 CG14209-RC 1936..2853 933..16 4560 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19614442..19614953 841..330 2560 100 Minus
X 23542271 X 19615181..19615417 252..16 1185 100 Minus
X 23542271 X 19614291..19614383 933..841 435 97.8 Minus
X 23542271 X 19615023..19615105 332..250 415 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:57:12 has no hits.

BS10121.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:57 Download gff for BS10121.3prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-PC 248..1164 17..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:26 Download gff for BS10121.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14209-PD 248..1164 17..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:51:08 Download gff for BS10121.3prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-RB 1847..2771 9..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:18 Download gff for BS10121.3prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-RC 1936..2860 9..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:18 Download gff for BS10121.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19614291..19614382 842..933 97 -> Minus
X 19614442..19614951 332..841 100 -> Minus
X 19615024..19615105 250..331 100 -> Minus
X 19615184..19615424 9..249 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:51:08 Download gff for BS10121.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19509057..19509138 250..331 100 -> Minus
arm_X 19508324..19508415 842..933 97 -> Minus
arm_X 19508475..19508984 332..841 100 -> Minus
arm_X 19509217..19509457 9..249 98   Minus

BS10121.5prime Sequence

927 bp (843 high quality bases) assembled on 2006-04-19

> BS10121.5prime
GAAGTTATCAGTCGACATGGCTACGAGGGAGGCCTGCGGCCAGTTTGCTG
CTGCCAGTGCGGCAATGGCGGCTGCTTCCAGTCAAAATCCGTCGAAGGCC
ACGATGACGGACCCCCGTTTTCGGATCCGACCCCTGCAGCAAGTGGCATC
CGCCTGTACCGGCGCCATGGTGACGGCCTGCTTTATGACCCCTCTGGATG
TGATCAAGACCCGCTTGCAGGCACAGCAGCAGGCGCTGCTCTCAAACAAG
TGTTTCCTCTACTGCAACGGCCTCATGGACCACATCTGCCCCTGCGGCCC
GGACACGCCCAACCCAGCAGCCGCCAAGCCCGCTCCCCGTTTTTCTGGCA
CCATTGACGCATTCATCAAAATCAGCCGCACTGAGGGCATCGGCTCCCTG
TGGTCGGGGCTCAGCCCAACGCTAATCTCGGCCCTGCCCTCGACCATCAT
ATACTTCGTGGCTTATGAGCAGTTCAAGGCCCGTTTCACCGATATCCACT
ACAAATACACGCGACGCCCGGATACCATTGCCCACGACATTCCACACCCG
ATTCCATTTCTGGTGCCGCTGCTGGCCGGCGTGTCGGGCCGCATTCTGGC
CGTAACCTGTGTAAGTCCCGTCGAGCTAATCCGCACCAAGATGCAATCGC
AGCGCATGACGCACGCCGAGATGTTTGGCACCATTCGCCAAGTGGTGCAG
TCGCAGGGCGTGCTGGGCTTGTGGCGCGGTCTGCCGCCAACCATCCTGCG
CGACGTGCCCTTCTCCGGCATCTACTGGACCTGCTACGAGTACCTCAAGA
GCTCCTTTGGCGTTGTGGAGCCAACGTTTAGCTTCAGCTTTGCGGCGGGA
GCGATATCCGGATCGGGTGCCGCCCACATCACCACGCCCTTCGATGTGGT
GAAAACGCACGAGCAGATCGAATTCGG

BS10121.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14209-PB 1164 Shawn-RB 1..911 17..927 4455 99.5 Plus
CG14209-PC 1164 Shawn-RC 1..911 17..927 4455 99.5 Plus
CG14209-PD 1164 Shawn-RD 1..911 17..927 4455 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Shawn-RE 3255 CG14209-RE 1890..2801 16..927 4500 99.6 Plus
Shawn-RD 1618 CG14209-RD 253..1164 16..927 4500 99.6 Plus
Shawn-RC 3032 CG14209-RC 1688..2599 16..927 4500 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19614442..19614952 356..866 2555 100 Plus
X 23542271 X 19614213..19614383 186..356 855 100 Plus
X 23542271 X 19613974..19614143 16..185 850 100 Plus
X 23542271 X 19615027..19615085 869..927 265 96.6 Plus
3R 32079331 3R 7722807..7722912 124..229 215 80.2 Plus
Blast to na_te.dros performed on 2015-02-13 00:35:04 has no hits.

BS10121.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:58 Download gff for BS10121.5prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-PC 1..911 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:28 Download gff for BS10121.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14209-PD 1..911 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:00:22 Download gff for BS10121.5prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-RB 1592..2510 9..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:54 Download gff for BS10121.5prime
Subject Subject Range Query Range Percent Splice Strand
Shawn-RC 1681..2599 9..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:54 Download gff for BS10121.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19613970..19614143 11..185 98 -> Plus
X 19614213..19614382 186..355 100 -> Plus
X 19614442..19614951 356..865 100 -> Plus
X 19615024..19615085 866..927 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:00:22 Download gff for BS10121.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19508003..19508176 11..185 98 -> Plus
arm_X 19508246..19508415 186..355 100 -> Plus
arm_X 19508475..19508984 356..865 100 -> Plus
arm_X 19509057..19509118 866..927 93   Plus

BS10121.complete Sequence

1196 bp (1196 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ636566

> BS10121.complete
GAAGTTATCAGTCGACATGGCTACGAGGGAGGCCTGCGGCCAGTTTGCTG
CTGCCAGTGCGGCAATGGCGGCTGCTTCCAGTCAAAATCCGTCGAAGGCC
ACGATGACGGACCCCCGTTTTCGGATCCGACCCCTGCAGCAAGTGGCATC
CGCCTGTACCGGCGCCATGGTGACGGCCTGCTTTATGACCCCTCTGGATG
TGATCAAGACCCGCTTGCAGGCACAGCAGCAGGCGCTGCTCTCAAACAAG
TGTTTCCTCTACTGCAACGGCCTCATGGACCACATCTGCCCCTGCGGCCC
GGACACGCCCAACCCAGCAGCCGCCAAGCCCGCTCCCCGTTTTTCTGGCA
CCATTGACGCATTCATCAAAATCAGCCGCACTGAGGGCATCGGCTCCCTG
TGGTCGGGGCTCAGCCCAACGCTAATCTCGGCCCTGCCCTCGACCATCAT
ATACTTCGTGGCTTATGAGCAGTTCAAGGCCCGTTTCACCGATATCCACT
ACAAATACACGCGACGCCCGGATACCATTGCCCACGACATTCCACACCCG
ATTCCATTTCTGGTGCCGCTGCTGGCCGGCGTGTCGGGCCGCATTCTGGC
CGTAACCTGTGTAAGTCCCGTCGAGCTAATCCGCACCAAGATGCAATCGC
AGCGCATGACGCACGCCGAGATGTTTGGCACCATTCGCCAAGTGGTGCAG
TCGCAGGGCGTGCTGGGCTTGTGGCGCGGTCTGCCGCCAACCATCCTGCG
CGACGTGCCCTTCTCCGGCATCTACTGGACCTGCTACGAGTACCTCAAGA
GCTCCTTTGGCGTTGTGGAGCCAACGTTTAGCTTCAGCTTTGCGGCGGGA
GCGATATCCGGATCGGTGGCCGCCACCATCACCACGCCCTTCGATGTGGT
GAAAACGCACGAGCAGATCGAATTCGGCGAGAAGTTCATATTCTCAGATA
ATCCACCCAAGCAAGTGGCCACCAAGTCGGTGGCGATGCGCCTGGCCAGC
ATTTACCGCATGGGCGGTGTGCCCGCCATTTTCTCTGGACTGGGGCCCCG
ACTCTTCAAGGTAGCGCCCGCATGTGCGATAATGATTTCGTCCTTCGAGT
ACGGCAAGTCATTCTTCTATCACTACAACATCGACCAGCACAATCGGAGC
AATCAGGCGACAAAGGGGCCCGGCTCCTGAAAGCTTTCTAGACCAT

BS10121.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Shawn-RE 1164 CG14209-PE 1..1164 17..1180 5820 100 Plus
Shawn-RD 1164 CG14209-PD 1..1164 17..1180 5820 100 Plus
Shawn-RC 1164 CG14209-PC 1..1164 17..1180 5820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Shawn-RE 3255 CG14209-RE 1890..3055 16..1181 5830 100 Plus
Shawn-RD 1618 CG14209-RD 253..1418 16..1181 5830 100 Plus
Shawn-RC 3032 CG14209-RC 1688..2853 16..1181 5830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19614442..19614953 356..867 2560 100 Plus
X 23542271 X 19615181..19615417 945..1181 1185 100 Plus
X 23542271 X 19614213..19614383 186..356 855 100 Plus
X 23542271 X 19613974..19614143 16..185 850 100 Plus
X 23542271 X 19615023..19615105 865..947 415 100 Plus
3R 32079331 3R 7722807..7722912 124..229 215 80.2 Plus
Blast to na_te.dros performed on 2014-11-27 08:56:02 has no hits.

BS10121.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:03 Download gff for BS10121.complete
Subject Subject Range Query Range Percent Splice Strand
Shawn-RD 1..1164 17..1180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:32 Download gff for BS10121.complete
Subject Subject Range Query Range Percent Splice Strand
Shawn-RB 1592..2771 9..1188 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:03 Download gff for BS10121.complete
Subject Subject Range Query Range Percent Splice Strand
Shawn-RB 1600..2762 17..1179 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:03 Download gff for BS10121.complete
Subject Subject Range Query Range Percent Splice Strand
Shawn-RB 1592..2771 9..1188 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:56 Download gff for BS10121.complete
Subject Subject Range Query Range Percent Splice Strand
Shawn-RC 1689..2851 17..1179 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:56 Download gff for BS10121.complete
Subject Subject Range Query Range Percent Splice Strand
X 19613975..19614143 17..185 100 -> Plus
X 19614213..19614382 186..355 100 -> Plus
X 19614442..19614951 356..865 100 -> Plus
X 19615024..19615105 866..947 100 -> Plus
X 19615184..19615415 948..1179 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:03 Download gff for BS10121.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19508008..19508176 17..185 100 -> Plus
arm_X 19508246..19508415 186..355 100 -> Plus
arm_X 19508475..19508984 356..865 100 -> Plus
arm_X 19509057..19509138 866..947 100 -> Plus
arm_X 19509217..19509448 948..1179 100   Plus

BS10121.pep Sequence

Translation from 16 to 1179

> BS10121.pep
MATREACGQFAAASAAMAAASSQNPSKATMTDPRFRIRPLQQVASACTGA
MVTACFMTPLDVIKTRLQAQQQALLSNKCFLYCNGLMDHICPCGPDTPNP
AAAKPAPRFSGTIDAFIKISRTEGIGSLWSGLSPTLISALPSTIIYFVAY
EQFKARFTDIHYKYTRRPDTIAHDIPHPIPFLVPLLAGVSGRILAVTCVS
PVELIRTKMQSQRMTHAEMFGTIRQVVQSQGVLGLWRGLPPTILRDVPFS
GIYWTCYEYLKSSFGVVEPTFSFSFAAGAISGSVAATITTPFDVVKTHEQ
IEFGEKFIFSDNPPKQVATKSVAMRLASIYRMGGVPAIFSGLGPRLFKVA
PACAIMISSFEYGKSFFYHYNIDQHNRSNQATKGPGS*

BS10121.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
Shawn-PE 387 CG14209-PE 1..387 1..387 2021 100 Plus
Shawn-PD 387 CG14209-PD 1..387 1..387 2021 100 Plus
Shawn-PC 387 CG14209-PC 1..387 1..387 2021 100 Plus
Shawn-PB 387 CG14209-PB 1..387 1..387 2021 100 Plus
CG2616-PB 449 CG2616-PB 73..432 22..378 1122 60.2 Plus