Clone Sequence Records
BS10122.3prime Sequence
943 bp (855 high quality bases) assembled on 2006-04-19
> BS10122.3prime
ATGGTCTAGAAAGCTTCTACTCCGCCAAGCCGTGCTCGGCCAACTTGCCG
CCATTGCTGCTGCTGTGCCCTATCGGCGCCAGTTCAATGCTGGAGTCGAA
GCTCTTGGTGATCAGGTCGCTACTGGTCACCGAGTTGGTGGTGCTGCTCA
GCGGGGGCAGGGATGTGTTGGCACTTACGCCCAGCACGCCGTCGTTGAGG
TCGCTGTCCACGCTGAAACTGTTGCTGCCGTTCTCGTTGATCAGCGAGAG
CGTCTGCAGGGGCAACACTTCGCCGGTGGGTGGCTGTTCCGCGCTGGAAT
TCGAGCTGGGTTCCGCCTGCAGCTGGAGCAGTGAGTTGCGCTGCGTGTGC
TTGTCGAACTTGCGCTGCGGTGGCTTCGGTGGCTCCTTGTCCTTCTCTTT
CTCCTTGTCCTTAGATTTCTTGAAGCCCGCAATGAGCGCCTTGTGTGCCT
GTGCCTTGATGCCCTCCATGCTGGGCCGCATGATGGAAGTGCGCGTACCG
GAACTCTCCTTCGTTGAGGGCGATTCCTTGGTGCCCGGTTCCGTCTCCTC
AGTGACGCTGGCCAGCTGCTGCGGAGCCTGCTGTATTGTGAGGTCCTGTA
CCTGGATGGGTATGTCGTCGGGCAGTTTTTTCGTACGGAAGGATGCGTTC
GTGATCATAGACTTGGACACCGATGTGGTCACCGTTGTTGTGGACGGCGT
TAAGGCCACACTCAAGCCCATGGGACCGTCGTTGGGCTGTCCGGAAGGAT
TGGCGTGCAGCGAATTTCGCACTGCGCTGGTCACCAGGATCACTTCCGAG
TACATCTCGTAGATGGCCCGGTTGTGGATGTCGTCCAGTGTCTGAATGGC
TATCGTGCCGAAGCCATTAAACATGGCGAAATAGATGGCGTGCACCAGCT
CGATCAGGAAGGCGGCGGACAGTGGAATGCGCGGTGAAGAGGG
BS10122.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6406-PB | 1635 | CG6406-RB | 709..1635 | 943..17 | 4635 | 100 | Minus |
| CG6406-PA | 1635 | CG6406-RA | 709..1635 | 943..17 | 4635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6406-RA | 2734 | CG6406-RA | 911..1837 | 943..17 | 4635 | 100 | Minus |
| CG6406-RB | 2740 | CG6406-RB | 917..1843 | 943..17 | 4635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17735316..17736242 | 17..943 | 4635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:06:08 has no hits.
BS10122.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:29:59 Download gff for
BS10122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-PB | 709..1635 | 17..943 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:30 Download gff for
BS10122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-PA | 709..1635 | 17..943 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:46:28 Download gff for
BS10122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RB | 917..1850 | 9..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:17 Download gff for
BS10122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RB | 917..1850 | 9..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:17 Download gff for
BS10122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17735309..17736242 | 9..943 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:46:28 Download gff for
BS10122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13622814..13623747 | 9..943 | 99 | | Plus |
BS10122.5prime Sequence
943 bp (823 high quality bases) assembled on 2006-04-19
> BS10122.5prime
GAAGTTATCAGTCGACATGGCGGAACTGGTGAGGGACTGGCTGGCGGACT
ACCAGCGCATACGGGGTCAGCCCTCGGAGGCGGAAGCGTTCGTGGTGGAG
CACGAAACAGATCCCGAGATCGCCGAAGCCATATTCACCATCTTCAACGA
GCGACAGCGGAACGAAACGCTGGTTCACGACATCTGCCAGCAGCTACTGG
CCTTCTACCGCTCGCCGGAGCAGACGCTGCACAAGTTCCCGCTGCAGTTC
ATCCCAGTGCTTCTCTACACGTACCTCCACTCGGTGGCCGGCGGCGATAA
GAAGGCTGCGCGCGGCGTGGAGACGCTGCTCATCTGCATTTACAATGGCG
AGGTGTCCACCGAAGACGGCGGCCAGAAGGTGGTGGCCTTTCGCATGCCC
ATCCTGGCCCAGACGTCCGTTTACCACGAGGTAAAGAACCTGCCCATGAC
GGATCTGCGCCGTTGGGAGGAGAACTGCAACCGGGAGGTGAAGTGGGGTC
CACACCAGCGCATCGAATCGATTCATGCCCAGAACCGAATGCGTATTCTT
ACTGCTTTGCTGTTCTGCTACAACCAGCAGGTCAGCCAAACGCAGAAGTC
TTCGCTACTGCACTTGTGCCGGGTCACATCGCAGTTGGTGAACCAAGGAT
TCACCACGAAGTCGGGTCATGGCCATCGAATGAGTTATGGATCTGATCCT
GCAACCGGAGTACCTTTTCCCAAGCCCTCTTCACCGCGCATTCCACTGTC
CGCCGCCTTCCTGATCGAGCTGGTGCACGCCATCTATTTCGCCATGTTTA
ATGGCTTCGGCACGATAGCCATTCAGACACTGGACGACATCCACAACCGG
GCCATCTACGAGATGTACTCGGAAGTGATCCTGGTGACCAGCGCAGTGCG
GAATTCGCTGCACGCCNATCCTTCCGGACAGCCCAACGACGGT
BS10122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6406-PB | 1635 | CG6406-RB | 1..927 | 17..943 | 4591 | 99.7 | Plus |
| CG6406-PA | 1635 | CG6406-RA | 1..927 | 17..943 | 4591 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6406-RA | 2734 | CG6406-RA | 203..1129 | 17..943 | 4609 | 99.8 | Plus |
| CG6406-RB | 2740 | CG6406-RB | 209..1135 | 17..943 | 4609 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17736332..17737005 | 690..17 | 3370 | 100 | Minus |
| 2R | 25286936 | 2R | 17736024..17736277 | 943..690 | 1244 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:32:19 has no hits.
BS10122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:30:00 Download gff for
BS10122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-PB | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:47:32 Download gff for
BS10122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-PA | 1..927 | 17..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:38:25 Download gff for
BS10122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RB | 204..1135 | 13..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:13:13 Download gff for
BS10122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RB | 204..1135 | 13..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:13:13 Download gff for
BS10122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17736024..17736276 | 691..943 | 99 | <- | Minus |
| 2R | 17736332..17737010 | 13..690 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:38:25 Download gff for
BS10122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13623529..13623781 | 691..943 | 99 | <- | Minus |
| arm_2R | 13623837..13624515 | 13..690 | 99 | | Minus |
BS10122.complete Sequence
1667 bp (1667 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ636567
> BS10122.complete
GAAGTTATCAGTCGACATGGCGGAACTGGTGAGGGACTGGCTGGCGGACT
ACCAGCGCATACGGGGTCAGCCCTCGGAGGCGGAAGCGTTCGTGGTGGAG
CACGAAACAGATCCCGAGATCGCCGAAGCCATATTCACCATCTTCAACGA
GCGACAGCGGAACGAAACGCTGGTTCACGACATCTGCCAGCAGCTACTGG
CCTTCTACCGCTCGCCGGAGCAGACGCTGCACAAGTTCCCGCTGCAGTTC
ATCCCAGTGCTTCTCTACACGTACCTCCACTCGGTGGCCGGCGGCGATAA
GAAGGCTGCGCGCGGCGTGGAGACGCTGCTCATCTGCATTTACAATGGCG
AGGTGTCCACCGAAGACGGCGGCCAGAAGGTGGTGGCCTTTCGCATGCCC
ATCCTGGCCCAGACGTCCGTTTACCACGAGGTAAAGAACCTGCCCATGAC
GGATCTGCGCCGTTGGGAGGAGAACTGCAACCGGGAGGTGAAGTGGGGTC
CACACCAGCGCATCGAATCGATTCATGCCCAGAACCGAATGCGTATTCTT
ACTGCTTTGCTGTTCTGCTACAACCAGCAGGTCAGCCAAACGCAGAAGTC
TTCGCTACTGCACTTGTGCCGGGTCACATCGCAGTTGGTGAACCAAGGAT
TCACCACGAAGTCGGGTCATGGCCATCGAATGAGTTATGGATCTGATCCT
GCAACCGGAGTACCTTTTCCCAAGCCCTCTTCACCGCGCATTCCACTGTC
CGCCGCCTTCCTGATCGAGCTGGTGCACGCCATCTATTTCGCCATGTTTA
ATGGCTTCGGCACGATAGCCATTCAGACACTGGACGACATCCACAACCGG
GCCATCTACGAGATGTACTCGGAAGTGATCCTGGTGACCAGCGCAGTGCG
AAATTCGCTGCACGCCAATCCTTCCGGACAGCCCAACGACGGTCCCATGG
GCTTGAGTGTGGCCTTAACGCCGTCCACAACAACGGTGACCACATCGGTG
TCCAAGTCTATGATCACGAACGCATCCTTCCGTACGAAAAAACTGCCCGA
CGACATACCCATCCAGGTACAGGACCTCACAATACAGCAGGCTCCGCAGC
AGCTGGCCAGCGTCACTGAGGAGACGGAACCGGGCACCAAGGAATCGCCC
TCAACGAAGGAGAGTTCCGGTACGCGCACTTCCATCATGCGGCCCAGCAT
GGAGGGCATCAAGGCACAGGCACACAAGGCGCTCATTGCGGGCTTCAAGA
AATCTAAGGACAAGGAGAAAGAGAAGGACAAGGAGCCACCGAAGCCACCG
CAGCGCAAGTTCGACAAGCACACGCAGCGCAACTCACTGCTCCAGCTGCA
GGCGGAACCCAGCTCGAATTCCAGCGCGGAACAGCCACCCACCGGCGAAG
TGTTGCCCCTGCAGACGCTCTCGCTGATCAACGAGAACGGCAGCAACAGT
TTCAGCGTGGACAGCGACCTCAACGACGGCGTGCTGGGCGTAAGTGCCAA
CACATCCCTGCCCCCGCTGAGCAGCACCACCAACTCGGTGACCAGTAGCG
ACCTGATCACCAAGAGCTTCGACTCCAGCATTGAACTGGCGCCGATAGGG
CACAGCAGCAGCAATGGCGGCAAGTTGGCCGAGCACGGCTTGGCGGAGTA
GAAGCTTTCTAGACCAT
BS10122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6406-RA | 1635 | CG6406-PA | 1..1635 | 17..1651 | 8175 | 100 | Plus |
| CG6406-RB | 1635 | CG6406-PB | 1..1635 | 17..1651 | 8175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6406-RA | 2734 | CG6406-RA | 203..1837 | 17..1651 | 8175 | 100 | Plus |
| CG6406-RB | 2740 | CG6406-RB | 209..1843 | 17..1651 | 8175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17735316..17736277 | 1651..690 | 4810 | 100 | Minus |
| 2R | 25286936 | 2R | 17736332..17737005 | 690..17 | 3370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:25:06 has no hits.
BS10122.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:38:04 Download gff for
BS10122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RA | 1..1635 | 17..1651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:23:34 Download gff for
BS10122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RA | 193..1839 | 13..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:48 Download gff for
BS10122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RB | 209..1843 | 17..1651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:38:04 Download gff for
BS10122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RA | 193..1839 | 13..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:00 Download gff for
BS10122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6406-RB | 209..1843 | 17..1651 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:00 Download gff for
BS10122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17735316..17736276 | 691..1651 | 100 | <- | Minus |
| 2R | 17736332..17737005 | 17..690 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:48 Download gff for
BS10122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13622821..13623781 | 691..1651 | 100 | <- | Minus |
| arm_2R | 13623837..13624510 | 17..690 | 100 | | Minus |
BS10122.pep Sequence
Translation from 16 to 1650
> BS10122.pep
MAELVRDWLADYQRIRGQPSEAEAFVVEHETDPEIAEAIFTIFNERQRNE
TLVHDICQQLLAFYRSPEQTLHKFPLQFIPVLLYTYLHSVAGGDKKAARG
VETLLICIYNGEVSTEDGGQKVVAFRMPILAQTSVYHEVKNLPMTDLRRW
EENCNREVKWGPHQRIESIHAQNRMRILTALLFCYNQQVSQTQKSSLLHL
CRVTSQLVNQGFTTKSGHGHRMSYGSDPATGVPFPKPSSPRIPLSAAFLI
ELVHAIYFAMFNGFGTIAIQTLDDIHNRAIYEMYSEVILVTSAVRNSLHA
NPSGQPNDGPMGLSVALTPSTTTVTTSVSKSMITNASFRTKKLPDDIPIQ
VQDLTIQQAPQQLASVTEETEPGTKESPSTKESSGTRTSIMRPSMEGIKA
QAHKALIAGFKKSKDKEKEKDKEPPKPPQRKFDKHTQRNSLLQLQAEPSS
NSSAEQPPTGEVLPLQTLSLINENGSNSFSVDSDLNDGVLGVSANTSLPP
LSSTTNSVTSSDLITKSFDSSIELAPIGHSSSNGGKLAEHGLAE*
BS10122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6406-PA | 544 | CG6406-PA | 1..544 | 1..544 | 2791 | 100 | Plus |
| CG6406-PB | 544 | CG6406-PB | 1..544 | 1..544 | 2791 | 100 | Plus |
